Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PRKRIR	Gene	0	30.70	49.91	23.02	99.25	117.94	79.70	63.95	35.91	9.92	49.20	86.56	50.99	51.66	50.70	20.22	48.64	28.08	65.12	65.63	115.13	99.07	27.55	43.38	23.59	29.56	25.36	59.24	20.00	50.36
2	260045	Transcript	0	132.09	273.12	69.07	382.86	456.30	420.15	317.44	136.07	47.02	239.02	394.81	213.75	225.75	234.59	100.24	238.67	110.96	339.64	375.85	593.81	536.36	110.14	166.19	111.85	126.43	98.75	235.82	79.94	232.60
3	IG10_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.53	0.00	0.78	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	IG10_SR1	SilentIntergenicRegion	0	1.10	1.50	0.00	9.85	10.06	1.65	1.73	1.26	0.19	0.00	0.00	0.16	0.00	0.18	0.94	1.28	0.00	1.32	1.65	1.89	1.22	1.86	0.00	0.00	0.25	1.08	0.00	1.12	0.00
5	ER1a	ExonRegion	0	48.13	46.98	19.50	111.83	196.89	66.57	66.97	67.10	7.17	73.77	50.28	59.20	85.11	59.31	24.90	59.98	29.89	102.10	66.87	111.06	78.52	58.96	61.87	23.48	27.66	56.60	37.18	34.82	138.58
6	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E1a_E2a	KnownJunction	0	143.63	222.50	41.01	183.34	310.51	365.30	189.61	199.21	26.95	224.69	142.58	166.53	183.20	195.29	94.48	341.34	78.99	414.96	145.66	410.60	405.88	131.36	158.49	102.05	128.17	127.46	94.03	46.37	302.96
8	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	3.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.71	0.00	0.00	0.00	0.00
9	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	1.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.51	0.00	0.00	0.00	0.00	0.00	0.00
10	ER2a	ExonRegion	0	111.55	246.72	43.93	249.23	287.74	315.89	270.46	161.54	47.41	234.25	242.65	195.23	239.66	237.32	79.47	234.94	100.15	328.61	281.69	557.14	376.88	134.21	143.11	106.40	117.26	108.14	189.56	68.48	236.40
11	E2_Da	NovelBoundary	0	6.90	4.36	3.09	0.00	6.78	12.01	5.78	2.54	0.00	0.00	0.00	5.90	4.62	9.99	0.00	10.86	9.50	9.25	32.37	15.30	8.58	0.00	0.00	3.05	6.29	4.08	7.75	0.00	5.22
12	E2a_E3a	KnownJunction	0	89.36	213.00	25.79	253.22	289.44	301.26	253.98	110.63	39.38	202.12	245.93	189.30	254.82	196.79	86.70	144.12	105.82	180.06	331.79	498.59	463.11	100.15	130.02	63.64	74.75	83.21	122.31	66.68	201.68
13	E2a_E4a	NovelJunction	0	5.60	0.00	1.54	0.00	0.00	59.70	0.00	0.00	0.00	0.00	3.23	1.36	1.46	1.13	0.00	0.00	2.30	4.62	0.00	0.00	1.80	2.48	3.84	0.00	0.00	4.21	0.00	0.00	0.00
14	I2	Intron	0	6.31	8.53	1.15	5.31	8.22	7.03	3.32	1.43	3.80	3.91	3.93	3.56	0.76	4.31	2.23	5.93	4.72	13.17	16.08	6.93	6.63	0.82	1.22	1.52	2.67	1.19	1.94	1.84	1.20
15	I2_SR1	SilentIntronRegion	0	4.81	4.55	1.00	5.37	5.64	5.78	2.11	0.65	2.86	3.50	1.67	2.66	1.35	3.98	1.66	4.45	3.75	10.06	15.08	5.76	5.02	0.27	0.95	1.61	2.81	1.88	2.09	1.45	0.25
16	I2_AR1	ActiveIntronRegion	0	21.46	65.32	2.61	51.96	103.62	47.72	34.59	23.97	13.41	30.21	42.33	26.03	5.93	13.83	16.68	32.13	12.79	52.00	96.28	61.15	22.58	13.51	13.57	13.86	18.28	4.58	20.36	14.09	10.71
17	I2_SR2	SilentIntronRegion	0	1.69	11.45	0.07	1.77	0.05	7.61	0.00	0.00	1.48	2.31	1.03	2.34	1.01	1.32	0.06	1.04	3.53	14.54	13.24	3.73	4.32	0.00	0.00	1.15	2.63	0.48	0.00	0.88	0.01
18	I2_AR2	ActiveIntronRegion	0	3.52	6.71	0.25	4.35	2.22	5.36	1.53	0.56	0.94	2.75	1.88	2.11	0.20	2.45	0.70	4.24	4.53	10.70	23.25	5.95	3.85	0.55	0.55	0.65	0.53	0.48	0.83	0.25	1.83
19	I2_SR3	SilentIntronRegion	0	5.54	2.08	0.00	0.00	0.00	2.66	0.00	0.00	0.73	0.93	3.07	0.80	0.00	0.59	0.00	0.00	0.00	7.67	0.00	1.28	2.76	0.00	3.50	0.00	0.00	0.00	3.55	2.10	0.00
20	I2_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	I2_SR4	SilentIntronRegion	0	6.40	6.55	1.45	3.06	5.73	5.07	2.15	0.98	3.77	2.88	3.30	2.87	0.34	4.31	1.30	4.91	5.37	12.44	11.25	5.33	6.89	0.51	0.83	0.84	2.34	0.81	1.10	1.62	0.90
22	I2_AR4	ActiveIntronRegion	0	9.34	11.93	1.31	4.80	7.33	9.26	5.72	0.00	7.74	4.09	3.38	4.57	0.57	6.10	6.32	10.89	3.22	15.33	13.35	3.82	8.86	0.30	0.34	2.16	2.15	1.70	1.25	1.93	1.79
23	E3_Aa	NovelBoundary	0	5.31	23.56	0.00	0.00	0.00	3.88	0.00	2.54	6.64	7.59	1.23	3.95	0.00	6.49	9.97	3.75	6.12	28.51	8.09	0.00	8.98	2.29	0.00	2.93	1.74	3.86	0.00	0.00	0.00
24	ER3a	ExonRegion	0	163.96	376.24	67.47	517.98	696.96	512.46	400.42	187.35	75.80	353.91	526.24	315.53	357.61	315.08	116.47	301.37	175.05	377.08	436.32	798.78	674.35	144.57	216.71	149.52	182.00	176.21	356.74	126.13	428.95
25	E3_Da	NovelBoundary	0	2.83	4.46	0.00	0.00	0.00	10.28	2.63	0.00	4.45	0.00	0.00	1.87	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	5.94	2.48	0.00	0.00	0.00	0.00	0.00	0.00	4.09
26	E3a_E4a	KnownJunction	0	186.51	554.27	78.01	749.53	761.32	543.44	498.40	135.56	81.37	306.74	655.53	260.30	182.72	334.85	170.62	329.79	136.50	580.76	801.15	955.09	731.97	125.24	220.54	209.29	201.55	101.19	426.11	113.68	222.25
27	E3a_E5a	NovelJunction	0	0.00	4.85	2.49	0.00	0.00	3.91	2.80	0.00	0.00	8.19	4.24	4.22	3.66	0.00	0.00	0.00	2.66	4.62	8.09	14.39	12.43	1.90	3.84	0.00	0.00	3.35	0.00	1.71	4.79
28	I3	Intron	0	1.45	1.78	0.10	0.44	0.00	3.08	0.74	0.23	1.48	0.62	0.80	0.93	0.48	0.57	0.79	0.61	0.78	2.13	2.65	1.14	2.23	0.00	0.00	0.26	0.35	0.24	0.22	0.80	0.35
29	I3_SR1	SilentIntronRegion	0	1.85	1.39	0.00	0.00	0.00	3.43	1.39	0.16	2.22	0.50	0.82	0.96	0.33	0.47	1.74	0.85	0.64	2.99	2.75	0.88	3.07	0.00	0.00	0.00	0.74	0.00	0.32	0.28	0.58
30	I3_AR1	ActiveIntronRegion	0	1.84	0.00	0.00	0.00	0.00	1.77	0.86	0.00	1.44	0.62	0.00	0.00	0.00	0.00	2.35	1.06	0.00	0.83	1.37	2.03	3.67	0.00	0.00	0.92	0.00	0.00	0.00	0.70	0.00
31	I3_AR2	ActiveIntronRegion	0	1.15	2.25	0.18	0.77	0.00	3.03	0.32	0.30	1.02	0.70	0.90	1.03	0.63	0.71	0.00	0.40	0.96	1.76	2.75	1.18	1.53	0.00	0.00	0.35	0.15	0.42	0.20	1.14	0.25
32	ER4a	ExonRegion	0	197.78	408.13	157.67	652.21	733.10	718.47	546.43	167.39	69.81	337.37	781.52	347.43	305.83	385.91	145.62	335.22	181.39	502.98	630.19	949.40	912.81	130.38	264.59	178.08	196.32	108.02	436.45	119.87	265.71
33	E4_Da	NovelBoundary	0	5.19	0.00	0.00	0.00	7.37	10.67	0.00	4.78	1.80	5.39	11.58	3.28	2.96	4.28	0.00	6.43	0.00	18.49	8.09	14.64	9.51	2.43	0.00	4.90	1.93	0.00	0.00	0.00	1.25
34	E4a_E5a	KnownJunction	0	229.10	365.60	169.30	659.59	755.57	912.23	594.86	174.93	70.04	394.06	851.98	359.90	396.43	359.03	171.81	374.77	173.59	536.45	654.14	1003.97	1127.62	151.35	272.01	160.90	192.23	115.05	421.09	131.92	277.78
35	I4	Intron	0	5.04	2.14	1.37	2.30	1.92	2.01	0.50	1.51	1.02	3.14	2.67	1.30	0.83	1.92	0.95	2.16	1.38	4.65	6.49	1.15	2.59	0.58	0.58	1.46	1.89	1.23	1.24	1.63	0.93
36	I4_SR1	SilentIntronRegion	0	5.41	2.29	1.47	2.47	2.06	1.95	0.46	1.62	1.09	3.31	2.82	1.25	0.89	1.96	0.60	2.03	1.48	4.68	6.11	1.05	2.56	0.62	0.62	1.56	1.97	1.26	1.33	1.43	0.95
37	I4_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	2.95	1.08	0.00	0.00	0.78	0.64	1.98	0.00	1.45	5.90	4.00	0.00	4.31	12.01	2.54	3.06	0.00	0.00	0.00	0.77	0.84	0.00	4.38	0.72
38	E5_Aa	NovelBoundary	0	5.60	4.56	1.30	29.12	7.22	7.44	0.00	0.00	0.00	3.32	4.08	1.36	0.00	0.97	8.37	7.19	3.65	0.00	24.28	7.11	5.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER5a	ExonRegion	0	18.80	24.61	18.92	68.83	75.19	45.71	35.83	20.93	5.22	24.25	56.59	30.33	26.37	27.70	12.07	26.55	17.28	33.74	34.84	59.63	56.11	15.04	28.37	13.26	17.97	12.85	38.95	11.56	19.13
40	IG9_AR11	ActiveIntergenicRegion	0	0.00	0.00	0.00	17.41	0.00	0.83	1.68	0.00	4.76	0.62	0.72	0.65	1.96	0.55	0.00	0.84	0.00	1.17	3.88	0.00	4.96	1.09	0.00	0.95	0.87	0.00	0.00	0.00	0.00
41	IG9_SR8	SilentIntergenicRegion	0	0.00	0.00	0.00	9.14	0.00	0.00	1.61	0.00	0.00	2.38	0.00	0.22	0.00	0.00	0.00	4.56	0.00	0.00	0.00	0.00	0.50	0.00	0.00	0.75	0.00	0.00	0.00	0.00	0.00
42	IG9_SR4	SilentIntergenicRegion	0	0.52	0.88	0.80	2.09	0.00	1.25	0.29	1.61	0.16	1.48	0.00	0.99	1.47	1.00	0.46	0.26	0.45	0.56	0.00	0.00	1.86	0.00	0.26	1.42	0.00	1.61	2.89	0.00	4.48
43	IG9_AR6	ActiveIntergenicRegion	0	0.63	0.34	3.62	0.00	0.00	3.70	2.54	0.00	0.00	0.20	0.00	0.73	1.21	1.13	1.26	1.22	0.74	0.05	2.81	0.00	2.48	0.00	0.00	2.78	0.00	0.89	1.55	0.00	1.97
44	IG9_AR5	ActiveIntergenicRegion	0	0.00	0.00	1.61	0.00	0.00	4.70	1.70	0.89	0.00	3.14	0.00	0.00	4.10	1.40	1.40	1.23	3.87	1.45	0.00	0.00	2.92	0.00	0.00	1.92	0.00	0.42	0.29	0.00	1.66
45	IG9_AR4	ActiveIntergenicRegion	0	0.00	0.00	0.68	2.36	0.00	3.46	0.96	0.63	0.00	0.03	0.00	1.22	2.23	1.30	0.90	1.00	0.85	0.79	1.05	0.00	2.67	0.00	0.59	2.89	0.00	0.62	0.00	0.00	1.62
46	IG9_AR3	ActiveIntergenicRegion	0	0.00	0.30	0.00	0.67	0.00	0.37	0.19	3.12	0.00	0.54	0.00	0.88	0.55	0.15	0.90	0.23	0.56	0.18	0.90	0.00	2.13	0.44	2.39	0.81	0.00	0.89	0.23	0.00	1.56