Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C11orf67	Gene	0	38.13	23.44	14.01	22.11	67.97	37.50	56.74	49.79	45.47	21.69	20.14	19.75	67.10	30.55	39.86	22.94	34.35	40.75	27.79	62.39	43.87	89.38	45.18	76.37	41.03	66.48	26.21	53.23	114.17
2	393427	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.62	0.00	0.67	0.00	0.00	0.00	0.00	0.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	263301	Transcript	0	40.43	31.24	21.18	37.52	91.51	17.42	23.67	37.66	44.00	11.02	4.59	10.95	35.31	27.96	39.05	10.45	22.00	38.93	29.20	53.71	6.35	86.90	14.30	81.59	24.75	20.35	9.22	17.33	46.83
4	304716	Transcript	0	0.00	0.00	0.31	0.00	0.00	0.24	0.34	0.05	0.20	0.00	0.40	1.58	0.00	1.02	0.00	0.42	0.00	0.33	0.00	2.31	0.50	0.35	0.00	0.37	0.00	0.27	0.00	0.83	0.59
5	IG26	Intergenic	0	5.32	1.25	3.02	4.85	2.20	2.48	2.27	1.25	2.15	2.28	0.54	1.81	1.17	1.23	1.24	9.61	1.01	11.16	2.88	2.49	2.58	0.81	2.86	0.97	0.65	10.64	0.00	1.10	1.21
6	IG26_AR1	ActiveIntergenicRegion	0	7.51	2.16	4.56	5.58	1.90	3.75	3.14	0.72	2.40	3.37	0.93	2.64	0.51	1.77	0.00	14.91	1.74	13.13	1.24	4.29	3.33	1.40	4.22	1.67	1.11	15.91	0.00	1.27	1.56
7	IG26_AR2	ActiveIntergenicRegion	0	3.91	0.00	1.07	6.03	4.73	1.37	1.61	2.53	3.01	1.44	0.00	1.14	3.05	0.84	5.60	3.48	0.00	16.51	11.88	0.00	2.39	0.00	1.58	0.00	0.00	4.95	0.00	1.51	1.28
8	ER1a	ExonRegion	0	43.44	16.31	21.42	32.86	132.78	58.64	96.73	60.92	61.51	32.14	35.88	31.52	101.95	30.92	38.56	33.68	40.58	44.86	20.39	82.58	80.62	121.20	73.20	81.52	50.47	116.32	58.95	72.53	220.10
9	E1_Da	NovelBoundary	0	2.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.65
10	E1a_E2a	KnownJunction	0	3.01	8.63	8.00	8.20	78.99	12.16	11.61	22.00	17.97	9.99	20.15	5.21	45.89	15.60	34.88	0.00	13.03	4.62	0.00	24.73	6.10	19.88	4.97	29.13	18.07	10.56	0.00	20.98	72.04
11	I1_AR1	ActiveIntronRegion	0	0.47	0.70	0.81	0.00	0.53	0.00	0.00	0.53	1.72	0.32	0.26	3.43	0.78	0.89	2.00	3.13	1.90	1.30	0.35	0.90	0.94	0.00	1.58	2.44	0.31	0.17	0.00	1.66	2.57
12	I1_AR4	ActiveIntronRegion	0	0.00	16.19	0.00	0.00	0.00	1.37	0.00	0.00	0.00	1.44	0.00	0.00	0.00	0.00	9.20	0.00	1.43	5.26	0.00	0.00	2.14	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00
13	I1_AR5	ActiveIntronRegion	0	2.86	9.85	0.00	0.00	0.00	1.83	0.00	0.00	0.00	1.44	0.00	0.00	0.00	0.00	11.20	0.00	1.00	0.00	0.00	0.00	2.85	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00
14	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	1.92	0.00	1.69	0.00	0.00	0.00	0.00	1.10	0.00	0.00	0.00	0.00	0.00	0.00	2.63	1.82	0.00	0.00	2.29	0.00
15	ER2a	ExonRegion	0	77.32	36.70	9.14	20.62	55.23	93.95	142.65	106.62	98.15	43.55	39.40	35.91	145.64	59.38	75.27	53.53	65.73	75.82	63.81	126.33	121.70	184.13	99.77	139.15	84.27	161.49	39.35	112.74	237.02
16	E2_Da	NovelBoundary	0	0.00	0.00	1.27	10.78	0.00	0.00	0.00	0.00	2.77	2.00	0.00	0.00	1.37	0.00	0.00	3.14	4.21	0.00	0.00	0.00	0.00	0.00	0.00	2.75	1.63	0.00	0.00	1.80	0.00
17	E2a_E3a	KnownJunction	1	38.64	18.81	15.20	39.69	70.59	24.98	51.21	51.46	47.72	42.86	44.23	38.01	144.57	50.10	67.97	6.81	85.00	56.00	24.28	91.80	23.58	72.83	95.79	89.54	62.59	95.57	87.67	141.35	242.29
18	E2a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	7.37	0.00	2.92	2.54	4.26	0.00	0.00	3.92	7.26	0.00	16.34	0.00	0.83	4.62	0.00	0.00	1.52	2.48	8.67	0.00	0.00	0.00	0.00	0.00	5.05
19	I2_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.66	0.00	0.00	0.90	0.00	0.00	0.00	2.07	0.00	0.00	0.62	0.00	3.70	0.00	0.00	2.25	0.00	0.00	0.00	0.00	0.00
20	I2_AR4	ActiveIntronRegion	0	1.52	0.00	0.00	0.00	0.00	0.97	0.14	0.00	2.98	0.00	0.00	1.91	0.97	0.79	3.27	1.09	0.08	0.38	2.01	0.00	2.26	0.00	0.00	2.48	0.73	0.00	0.00	0.00	0.45
21	I2_AR6	ActiveIntronRegion	0	1.64	2.05	0.43	0.00	4.98	0.94	1.03	0.94	1.77	1.10	1.40	1.02	0.98	1.59	6.03	1.97	8.14	3.88	4.63	1.41	4.27	0.00	0.69	1.86	1.16	2.60	0.47	1.03	1.26
22	I2_AR7	ActiveIntronRegion	0	4.70	3.68	0.76	5.74	5.32	3.14	2.31	1.47	3.27	5.14	1.22	2.63	2.23	2.98	2.29	1.80	6.04	1.58	2.92	3.02	3.72	0.41	1.57	4.18	1.92	1.73	1.05	5.94	0.69
23	I2_SR6	SilentIntronRegion	0	5.32	0.00	0.00	10.09	6.70	1.33	0.00	2.35	2.03	1.17	0.00	2.69	0.54	2.52	0.19	1.53	6.37	3.11	2.81	2.08	7.94	0.00	0.62	2.04	5.47	3.71	0.00	3.04	0.74
24	I2_AR8	ActiveIntronRegion	0	1.88	2.68	0.59	3.03	2.51	1.68	1.06	2.77	3.04	2.78	0.63	3.11	1.59	2.61	1.78	2.79	5.71	4.52	2.81	0.00	3.23	1.27	1.59	1.86	0.48	2.95	2.58	2.29	1.96
25	I2_SR7	SilentIntronRegion	0	2.86	5.37	0.59	0.00	2.06	0.97	1.84	0.52	4.64	1.22	1.25	3.25	0.91	1.53	4.71	1.69	4.82	2.80	2.92	0.39	2.91	0.25	0.76	0.76	1.51	0.99	0.00	1.37	0.66
26	I2	Intron	0	2.35	4.17	0.00	0.00	0.00	1.51	1.66	0.00	3.38	2.77	2.28	1.70	1.42	0.50	3.79	1.36	2.87	3.79	0.88	0.54	3.13	0.49	0.00	2.95	1.96	0.86	0.00	3.58	0.00
27	I2_SR1	SilentIntronRegion	0	2.01	5.61	0.00	0.00	0.00	2.57	2.83	0.00	5.25	2.70	2.78	2.89	2.42	0.85	2.16	2.32	4.89	4.66	1.49	0.93	5.34	0.00	0.00	4.03	1.34	0.74	0.00	3.81	0.00
28	I2_SR2	SilentIntronRegion	0	3.11	1.54	0.00	0.00	0.00	0.00	0.00	0.00	1.12	3.62	2.16	0.00	0.00	0.00	8.69	0.00	0.00	3.51	0.00	0.00	0.00	1.69	0.00	1.71	3.82	1.03	0.00	3.66	0.00
29	E3_Aa	NovelBoundary	0	5.90	9.40	0.00	0.00	5.60	1.61	0.00	4.53	5.73	1.52	0.00	4.04	11.37	3.08	0.00	8.80	12.31	4.50	0.00	3.39	2.01	2.48	6.60	7.96	0.00	0.00	19.38	6.20	6.90
30	I2_AR2	ActiveIntronRegion	0	2.56	3.28	0.00	0.00	0.00	0.00	0.00	0.00	0.09	1.67	0.60	0.00	0.00	0.00	1.72	0.00	0.00	0.94	0.00	0.00	0.00	0.35	0.00	0.99	1.21	1.15	0.00	2.70	0.00
31	ER3a	ExonRegion	1	47.45	53.07	38.97	31.69	94.08	29.03	35.17	57.63	39.57	26.91	30.73	28.90	78.82	38.23	43.93	17.43	55.39	47.02	20.51	64.29	18.77	80.86	50.52	108.18	45.13	54.84	51.93	68.22	129.03
32	E3_Da	NovelBoundary	0	8.02	4.27	4.34	0.00	7.37	0.00	0.00	4.73	1.55	4.91	1.61	4.10	0.00	2.10	7.57	0.00	34.53	4.62	8.09	0.00	0.00	0.00	4.28	2.51	0.00	15.02	7.60	3.95	10.70
33	E3a_E5a	KnownJunction	0	54.50	44.98	31.19	45.30	98.44	22.79	28.66	45.54	57.52	10.31	4.18	13.37	42.38	31.79	39.47	9.41	24.54	41.74	32.37	66.49	6.58	108.17	11.87	102.16	20.69	22.66	13.42	10.29	57.64
34	E3a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	I3	Intron	0	5.05	8.55	2.55	1.99	6.09	2.48	1.96	6.89	7.38	4.60	3.13	3.93	1.35	2.32	9.44	4.37	15.31	2.40	5.31	2.08	4.35	2.75	2.76	5.07	6.14	4.79	6.35	3.16	2.04
36	I3_AR1	ActiveIntronRegion	0	5.72	10.20	2.40	2.68	5.73	2.30	2.64	8.60	7.74	5.93	3.35	4.85	1.81	2.78	7.34	5.12	18.41	1.50	6.15	1.93	5.12	3.58	3.17	4.86	5.96	5.83	8.11	3.96	2.30
37	I3_SR1	SilentIntronRegion	0	3.15	3.84	3.02	0.00	7.21	3.01	0.00	2.00	6.42	0.78	2.53	1.28	0.00	0.99	15.61	2.26	6.44	5.05	2.94	2.54	2.15	0.36	1.58	5.72	6.72	1.82	1.29	0.87	1.30
38	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.62	0.00	0.67	0.00	0.00	0.00	0.00	0.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	I4_AR3	ActiveIntronRegion	0	2.70	0.90	0.23	1.00	2.74	0.58	0.28	0.00	3.76	2.23	0.65	1.12	0.54	0.76	2.83	1.74	2.72	3.24	1.34	2.63	1.40	0.00	0.25	0.96	0.24	0.91	0.26	0.98	1.68
40	I4_SR2	SilentIntronRegion	0	1.53	0.38	0.00	1.71	2.33	0.33	1.68	0.88	1.82	2.06	1.71	0.66	0.93	0.92	4.82	0.30	2.13	2.14	2.28	0.95	3.06	1.29	0.65	1.23	1.33	0.91	0.22	0.72	0.40
41	E5_Aa	NovelBoundary	0	5.54	0.00	0.00	0.00	5.60	0.00	0.00	4.88	1.28	4.07	0.00	0.00	1.18	7.36	23.52	6.66	12.18	5.39	0.00	0.00	6.22	0.00	4.73	0.00	3.41	14.55	0.00	0.00	3.47
42	ER5a	ExonRegion	0	26.35	17.50	11.17	29.75	84.57	12.05	18.68	29.78	30.47	11.74	5.01	8.52	28.24	24.13	38.63	11.50	19.46	36.13	26.03	40.92	6.12	65.63	16.72	61.01	28.80	18.03	5.03	24.38	36.01
43	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.67	0.00	0.00	2.61	0.00	0.00	3.82	3.87	0.00	0.00	3.64	0.00	0.00	0.00	0.00	0.00	4.29	0.00	0.00	0.00
44	I5	Intron	0	3.15	2.53	0.76	3.26	1.44	2.79	1.94	2.90	4.15	3.01	1.59	2.16	1.33	3.81	3.59	3.26	11.21	5.18	6.49	3.56	3.32	0.53	1.06	3.33	2.90	1.85	0.49	4.79	1.34
45	I5_SR2	SilentIntronRegion	0	3.22	2.59	0.78	3.33	1.47	2.86	1.99	2.97	4.25	3.08	1.63	2.21	1.37	3.90	3.67	3.34	11.48	5.30	6.64	3.64	3.40	0.54	1.09	3.41	2.97	1.89	0.50	4.91	1.37
46	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	2.04	0.00	1.75	0.00	1.04	7.77	3.29	5.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.43	0.00
47	ER6a	ExonRegion	0	0.00	0.00	0.83	0.00	0.00	0.71	1.03	0.15	0.60	0.00	1.21	3.20	0.01	1.69	0.00	1.27	0.01	0.98	0.00	6.94	1.44	1.05	0.00	1.10	0.00	0.80	0.00	2.49	1.76
48	E6_Da	NovelBoundary	0	2.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	1.14	0.00	0.00	0.00	0.00	3.92	0.00	24.28	0.00	0.00	0.00	2.02	5.50	0.00	0.00	0.00	0.00	0.00
49	ER7a	ExonRegion	0	0.00	0.00	0.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	IG27_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.89	0.00	0.00	0.65	0.00	0.00	0.00	1.82	1.00	0.00	0.96	0.00	0.00	0.93	0.00	0.00	0.00	0.00	0.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00