Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C11orf59	Gene	0	1880.95	548.33	843.38	849.85	815.89	699.73	2051.46	1951.36	762.12	697.71	576.41	566.42	1009.38	722.71	1306.28	727.55	760.95	709.25	598.58	1991.49	437.02	1518.90	698.37	800.58	1030.41	755.49	518.26	792.46	654.76
2	278671	Transcript	0	1807.68	443.90	700.55	800.88	816.99	526.25	1705.85	1953.17	611.73	538.89	411.06	560.97	905.88	689.90	1103.75	644.42	767.98	619.70	485.14	1964.38	315.13	1541.71	619.59	705.54	857.94	687.98	348.89	760.55	589.36
3	ER1a	ExonRegion	0	701.42	93.20	335.75	838.70	916.71	173.87	584.52	566.41	164.77	205.91	100.02	194.19	292.68	134.80	267.82	376.11	218.31	181.17	116.56	481.64	114.40	723.99	284.74	146.48	217.30	244.19	118.72	296.56	191.60
4	E1a_E2a	KnownJunction	0	388.48	26.18	279.10	292.26	300.49	133.21	674.96	590.57	167.40	89.36	65.14	193.19	272.94	162.12	300.97	152.69	250.51	176.72	56.42	754.22	69.67	633.43	117.71	170.47	191.32	281.13	127.97	247.84	186.30
5	Ix	Intron	0	5.21	1.09	0.65	0.84	0.33	1.64	0.37	0.28	1.14	1.43	0.34	0.80	0.51	1.59	0.59	1.51	2.15	3.41	0.91	0.77	1.41	0.48	0.30	1.01	1.34	0.74	0.46	1.48	0.30
6	Ix_SR1	SilentIntronRegion	0	4.72	1.08	0.73	0.91	0.30	1.68	0.38	0.33	1.19	1.59	0.45	0.92	0.39	1.85	0.72	1.43	2.36	4.01	1.14	0.91	1.18	0.51	0.26	1.02	1.33	0.86	0.61	1.73	0.40
7	Ix_AR1	ActiveIntronRegion	0	10.16	2.32	0.76	1.41	0.59	2.65	0.24	0.33	0.98	1.29	0.14	0.30	0.67	1.21	0.55	1.19	2.39	1.92	0.77	0.88	3.08	0.22	0.22	1.55	1.03	0.57	0.22	0.78	0.00
8	E2_Aa	NovelBoundary	0	10.50	0.00	0.92	18.12	6.78	9.09	0.00	0.00	1.61	0.00	0.00	0.00	0.00	3.28	0.00	0.00	5.72	9.25	8.09	0.00	1.80	0.00	0.00	3.05	0.00	0.00	0.00	4.13	0.00
9	ER2a	ExonRegion	0	1202.46	281.80	320.41	396.59	351.88	447.84	1276.19	1495.56	510.16	328.47	203.76	374.79	666.46	442.95	908.57	565.81	511.14	551.03	287.48	1626.82	290.94	1168.41	390.32	385.07	489.02	757.14	150.52	539.42	546.30
10	E2_Da	NovelBoundary	0	5.19	0.00	0.00	0.00	0.00	0.00	0.00	2.14	0.00	0.00	0.00	1.87	0.00	0.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	E2a_E3a	KnownJunction	0	1833.62	534.78	877.00	810.57	647.26	554.72	1965.90	2430.32	648.76	620.91	390.18	697.55	1052.71	799.19	1239.97	871.09	945.52	670.15	581.98	2415.64	298.38	1448.12	638.13	763.13	893.33	664.23	285.41	662.20	667.00
12	Ix	Intron	0	3.04	1.12	0.34	0.00	0.00	0.00	0.00	0.00	0.00	0.88	1.45	0.62	0.00	0.00	0.00	0.00	0.00	1.62	0.65	0.56	0.58	0.36	0.37	0.44	0.00	0.95	0.00	0.66	0.00
13	Ix_SR1	SilentIntronRegion	0	3.06	1.13	0.34	0.00	0.00	0.00	0.00	0.00	0.00	0.89	1.46	0.63	0.00	0.00	0.00	0.00	0.00	1.64	0.65	0.56	0.58	0.37	0.37	0.44	0.00	0.97	0.00	0.67	0.00
14	E3_Aa	NovelBoundary	0	7.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	4.49	0.00	1.24	0.00	0.00	0.00	1.40	4.62	8.09	0.00	1.80	0.00	0.00	2.57	0.00	0.00	0.00	0.00	0.00
15	ER3a	ExonRegion	0	1911.24	456.52	963.63	664.89	804.71	532.46	1825.21	2217.94	597.96	580.29	493.86	771.55	1048.94	833.38	1157.10	668.57	1044.94	663.71	455.95	2202.67	309.62	1665.01	761.81	757.51	926.54	801.41	426.58	1020.22	669.79
16	E3_Da	NovelBoundary	0	0.00	0.00	2.47	0.00	0.00	9.71	4.58	0.00	0.00	0.00	5.19	1.36	0.00	1.97	0.00	0.00	0.00	5.39	0.00	3.31	0.00	0.00	2.07	0.00	0.00	0.00	0.00	2.29	0.00
17	E3a_E4a	KnownJunction	0	1695.24	427.07	857.72	575.04	881.87	407.43	1616.43	1738.42	523.87	447.95	426.47	727.61	898.39	791.61	970.49	492.50	1226.15	577.68	347.75	2013.97	276.72	1395.12	830.20	649.78	670.64	702.59	444.99	1170.20	618.14
18	E3a_E5a	NovelJunction	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	1.37	0.00	0.00	0.00	0.00	0.00	3.39	0.00	2.48	4.48	0.00	0.00	6.31	0.00	0.00	2.84
19	Ix	Intron	0	8.09	0.45	0.23	0.00	0.68	2.50	1.13	1.54	2.11	2.02	0.17	0.26	0.27	2.15	0.00	0.35	1.46	5.25	0.45	1.99	0.60	0.00	1.01	2.10	0.20	0.00	0.00	2.51	0.19
20	Ix_AR1	ActiveIntronRegion	0	8.64	0.00	0.00	0.00	0.90	3.05	1.27	2.20	2.70	1.56	0.21	0.14	0.37	2.19	0.00	0.00	1.06	6.75	0.67	1.45	0.18	0.00	0.92	1.50	0.28	0.00	0.00	2.52	0.28
21	Ix_SR1	SilentIntronRegion	0	7.23	1.39	0.72	0.00	0.25	1.44	0.87	0.25	0.98	3.02	0.08	0.50	0.08	2.15	0.00	1.07	2.33	2.34	0.00	3.17	1.49	0.00	1.24	3.41	0.05	0.00	0.00	2.57	0.00
22	E4_Aa	NovelBoundary	0	2.54	0.00	0.00	0.00	0.00	0.00	2.46	2.54	1.43	1.60	0.00	0.00	0.00	1.95	0.00	3.82	2.50	5.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER4a	ExonRegion	0	2911.55	667.72	946.15	1332.00	1210.63	856.14	2961.44	3195.13	1006.27	918.86	536.22	801.74	1450.54	1083.82	1697.03	921.76	1146.07	1079.85	683.79	2933.46	523.02	2306.78	986.84	1073.59	1446.97	1102.02	359.77	1154.89	936.60
24	E4_Da	NovelBoundary	0	48.90	18.61	12.48	9.71	0.00	20.03	13.16	15.97	11.94	20.89	8.89	18.95	10.03	15.49	0.00	20.65	66.76	24.14	32.37	15.63	17.89	14.49	14.23	24.40	12.46	16.22	7.45	13.34	6.64
25	E4a_E5a	KnownJunction	0	3620.88	841.04	718.35	1415.16	1409.02	803.26	2150.30	3363.88	1004.08	830.03	729.43	694.20	1367.11	1171.57	1896.33	964.88	781.84	920.72	1091.36	3164.57	434.96	2992.40	800.26	1457.22	1678.01	883.26	517.25	929.41	797.74
26	Ix	Intron	0	14.17	8.84	1.05	4.51	1.54	9.09	2.54	2.32	7.59	8.64	2.62	5.05	4.69	11.97	15.63	10.15	16.92	13.44	2.01	15.77	3.14	6.81	4.55	7.45	6.30	7.42	2.88	13.86	2.10
27	Ix_AR1	ActiveIntronRegion	0	14.33	8.95	1.07	4.57	1.56	9.20	2.57	2.35	7.69	8.74	2.66	5.11	4.75	12.12	15.82	10.28	17.13	13.61	2.04	15.97	3.18	6.90	4.61	7.53	6.38	7.51	2.92	14.02	2.13
28	E5_Aa	NovelBoundary	0	14.86	7.47	9.44	28.04	6.04	9.82	7.61	2.19	4.69	1.64	0.00	7.35	3.31	16.79	0.00	6.81	22.37	14.64	0.00	25.80	1.93	4.76	2.07	11.01	8.94	8.41	2.39	5.21	3.37
29	ER5a	ExonRegion	0	2004.24	666.81	1006.79	882.68	830.37	827.36	2297.70	1980.27	882.26	828.27	754.43	593.89	1103.15	789.62	1495.50	786.36	787.35	756.24	744.94	2086.45	518.49	1542.11	766.33	946.61	1208.34	755.85	708.82	824.24	690.79