Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TRIM34	Gene	0	10.44	4.73	9.57	38.47	7.13	11.81	6.23	8.55	2.85	6.87	12.09	10.70	7.54	6.10	6.45	14.93	14.12	5.80	3.33	5.18	5.27	4.96	6.75	4.28	7.91	10.07	7.92	13.54	8.62
2	380089	Transcript	0	2.31	1.17	3.28	0.70	2.39	2.29	0.99	1.08	2.75	2.41	1.05	1.99	0.82	2.22	5.26	2.55	11.42	4.19	2.51	0.27	1.54	0.53	0.89	1.05	0.98	2.16	0.36	2.24	2.95
3	354852	Transcript	0	1.86	5.14	1.07	9.86	0.00	3.05	1.40	1.28	0.00	3.14	3.31	0.91	1.81	3.43	0.00	2.20	4.40	0.00	0.00	1.10	1.24	1.18	4.32	0.00	4.23	4.51	3.03	1.70	0.29
4	396866	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	491385	Transcript	0	9.77	2.02	0.00	4.83	2.70	14.91	2.66	2.28	3.08	5.83	1.05	5.48	2.53	7.61	20.91	16.46	20.14	6.71	2.16	1.39	1.96	0.84	1.43	0.77	6.71	1.47	0.86	4.58	3.13
6	495668	Transcript	0	5.96	0.99	5.10	10.60	0.00	11.66	8.75	4.47	0.22	4.67	4.96	5.27	4.34	3.22	6.59	12.41	0.00	4.77	0.00	7.60	1.65	0.09	2.21	3.41	4.75	3.29	1.10	2.78	0.13
7	ER1a	ExonRegion	0	4.62	2.35	6.56	1.41	4.79	4.58	1.98	2.17	5.50	4.81	2.10	3.98	1.65	4.43	10.51	5.10	22.84	8.38	5.01	0.54	3.08	1.06	1.78	2.11	1.97	4.32	0.72	4.48	5.89
8	E1_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	1.96	0.00	2.24	0.00	4.07	0.00	0.00	0.00	1.13	7.97	0.00	2.68	0.00	0.00	0.00	4.09	0.00	0.00	0.00	0.00	1.76	0.00	8.72	8.42
9	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.29	0.00	0.00	0.00	0.00	0.00	3.97	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	1.91
11	E2_Ab	NovelBoundary	0	4.95	8.73	1.15	9.92	0.00	5.41	2.29	2.29	0.00	5.43	4.37	1.39	2.74	6.23	0.00	7.19	7.18	0.00	0.00	3.23	1.76	7.05	6.50	0.00	6.67	9.66	4.57	2.16	0.00
12	ER2a	ExonRegion	0	1.86	5.14	1.07	9.86	0.00	3.05	1.40	1.28	0.00	3.14	3.31	0.91	1.81	3.43	0.00	2.20	4.40	0.00	0.00	1.10	1.24	1.18	4.32	0.00	4.23	4.51	3.03	1.70	0.29
13	ER2b	ExonRegion	0	158.19	86.84	92.74	598.57	109.50	210.47	116.55	127.44	33.89	145.09	214.44	130.59	105.29	90.46	79.83	238.44	114.05	103.91	64.02	74.41	99.98	77.55	123.45	72.28	149.20	194.74	116.15	235.53	109.06
14	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00	0.00	0.00	1.39	0.00	1.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	2.33	0.00	0.00	0.00	4.00	0.00
15	E2a_E3a	KnownJunction	0	363.29	136.02	199.05	1190.62	176.26	455.62	248.03	286.70	86.61	298.31	467.91	277.19	201.54	188.60	192.74	515.75	255.01	127.02	113.07	183.67	211.54	154.99	221.48	142.90	305.24	424.21	266.73	499.01	233.11
16	E2a_E4a	NovelJunction	0	2.24	0.00	2.92	0.00	11.35	0.00	0.00	6.62	1.52	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.51	0.00	0.00	0.00	0.00	0.00	8.91
17	E2a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.54	0.00	0.00	0.00	0.00	1.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	Ix_AR1	ActiveIntronRegion	0	2.60	1.30	1.32	29.02	0.00	15.35	2.45	2.98	1.82	7.59	1.45	1.75	0.53	0.73	5.96	17.23	4.73	0.78	0.00	3.35	0.58	1.24	0.00	2.61	12.14	5.69	5.19	11.88	0.00
19	E3_Ab	NovelBoundary	0	32.97	0.00	133.82	69.45	18.57	21.49	14.19	23.34	31.85	19.09	33.94	87.74	57.83	42.87	8.77	15.68	184.55	0.00	0.00	10.25	22.50	17.99	11.57	11.60	11.86	24.68	34.34	28.76	83.43
20	ER3a	ExonRegion	0	222.76	54.75	156.09	615.62	92.62	246.98	142.07	169.24	54.55	154.27	273.64	186.27	125.81	118.45	92.72	252.14	193.30	46.70	44.25	102.95	122.99	92.87	118.68	71.39	177.45	243.49	149.03	276.32	160.96
21	ER3b	ExonRegion	0	24.74	13.58	36.06	102.47	21.04	23.21	12.69	24.96	6.19	8.72	31.00	35.66	24.93	12.96	9.85	38.70	43.20	13.30	6.72	13.77	9.79	15.61	18.38	11.90	15.06	20.00	25.66	35.25	27.33
22	E3_Da	KnownBoundary	0	15.93	8.63	3.46	482.50	41.12	5.03	2.75	2.44	4.26	3.87	3.01	2.68	3.09	9.73	0.00	3.82	5.72	0.00	0.00	7.53	1.72	2.24	6.75	4.61	12.12	4.03	2.53	7.55	2.05
23	E3a_E3c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER3c	ExonRegion	0	0.00	0.00	0.00	142.38	10.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.08	0.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.95	0.00	0.00	0.00	0.00
25	E3b_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER3d	ExonRegion	0	0.00	0.00	0.00	7.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.54	0.00	0.00	0.00	0.00
27	ER4a	ExonRegion	0	0.00	0.00	0.00	0.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.03	0.00	0.00	1.04	0.00
28	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	Ix	Intron	0	6.49	3.43	0.27	2.93	0.00	7.09	2.48	0.30	2.34	3.66	2.53	3.64	0.64	2.37	5.72	9.72	8.19	1.10	1.57	0.90	1.99	0.15	0.15	1.94	3.39	0.39	0.90	2.00	0.55
30	Ix_SR1	SilentIntronRegion	0	6.51	3.44	0.27	2.94	0.00	7.11	2.48	0.30	2.35	3.68	2.54	3.65	0.64	2.38	5.74	9.76	8.21	1.11	1.57	0.91	1.99	0.15	0.15	1.94	3.40	0.39	0.90	2.01	0.55
31	ER5a	ExonRegion	0	2.63	0.00	1.23	1.76	0.00	0.67	0.58	1.35	0.00	1.42	0.58	0.91	0.76	1.73	3.82	3.99	2.61	0.94	0.00	0.00	0.35	0.00	0.00	0.00	0.69	1.45	0.00	1.12	1.15
32	E5a_E6a	KnownJunction	0	5.78	0.00	0.00	43.14	6.93	6.79	0.00	0.00	1.55	1.96	0.00	2.74	1.56	6.45	0.00	0.00	12.40	0.00	0.00	4.13	4.09	0.00	0.00	0.00	0.00	0.00	0.00	2.16	0.00
33	ER5b	ExonRegion	0	5.78	0.00	0.00	24.16	3.90	5.20	2.02	0.32	0.10	1.63	0.00	3.44	2.43	4.42	0.24	8.36	8.93	0.00	0.00	2.81	2.60	0.00	0.00	0.00	1.43	2.32	0.00	1.20	0.00
34	Ix	Intron	0	1.70	0.99	0.70	0.95	0.32	3.10	0.62	1.14	1.56	1.85	0.76	0.86	1.13	1.91	0.53	3.31	2.97	1.79	2.05	1.58	1.64	0.08	0.16	1.14	0.85	0.69	0.45	0.86	0.93
35	Ix_SR1	SilentIntronRegion	0	1.73	1.00	0.71	0.97	0.33	3.15	0.63	1.16	1.58	1.88	0.77	0.87	1.15	1.94	0.54	3.36	3.01	1.82	2.08	1.60	1.66	0.08	0.16	1.16	0.87	0.70	0.45	0.88	0.95
36	E6_Aa	NovelBoundary	0	0.00	0.00	2.39	25.24	0.00	5.06	0.00	0.00	0.00	9.15	1.61	1.14	0.00	4.30	8.37	21.80	7.90	0.00	0.00	0.00	0.00	0.00	0.00	2.45	0.00	1.85	0.00	0.00	0.00
37	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER6a	ExonRegion	0	9.69	2.71	0.00	32.43	4.98	12.19	2.37	5.20	1.47	7.72	0.31	4.95	2.60	9.11	14.61	21.46	16.90	2.37	3.94	2.81	3.91	0.00	1.26	1.12	4.47	1.57	0.00	2.41	0.00
39	ER6b	ExonRegion	0	9.77	2.02	0.00	4.83	2.70	14.91	2.66	2.28	3.08	5.83	1.05	5.48	2.53	7.61	20.91	16.46	20.14	6.71	2.16	1.39	1.96	0.84	1.43	0.77	6.71	1.47	0.86	4.58	3.13
40	E6_Db	NovelBoundary	0	15.34	10.66	3.09	0.00	6.48	25.90	0.00	0.00	0.00	16.70	11.01	8.95	0.00	8.29	26.91	27.00	34.03	4.62	24.28	18.36	5.78	0.00	0.00	5.74	3.79	4.33	0.00	0.00	0.00
41	Ix	Intron	0	13.09	4.26	2.63	11.26	1.42	10.39	5.04	3.64	5.55	5.29	7.06	6.42	0.49	10.76	12.27	24.72	25.17	8.31	2.23	6.41	6.30	1.99	0.42	8.88	7.73	2.01	0.64	3.51	4.16
42	Ix_AR1	ActiveIntronRegion	0	11.17	4.66	2.58	11.57	0.88	12.79	3.67	4.65	2.23	8.20	8.06	6.41	0.94	9.18	14.32	28.06	26.43	9.46	4.04	6.71	5.34	1.76	0.98	11.36	8.96	1.14	0.66	2.15	3.90
43	Ix_SR1	SilentIntronRegion	0	14.87	4.43	2.80	12.46	2.11	10.48	6.73	2.39	8.25	4.62	7.14	7.36	0.35	12.94	14.25	26.64	28.72	8.74	1.73	7.31	6.98	2.45	0.20	9.02	8.08	2.89	0.79	4.53	4.60
44	Ix_AR2	ActiveIntronRegion	0	10.84	2.71	2.11	6.04	0.00	4.65	1.70	6.21	2.84	1.22	4.51	2.85	0.00	6.11	0.00	9.87	8.81	4.06	0.00	2.32	6.01	0.74	0.00	2.68	3.61	0.66	0.00	2.75	3.09
45	ER7a	ExonRegion	0	1.25	0.55	0.04	1.23	0.00	0.94	0.08	0.36	0.00	0.34	0.14	1.32	0.37	1.37	0.00	0.05	0.00	0.03	0.00	1.73	0.00	0.41	0.43	0.28	1.08	0.56	1.52	0.15	0.62
46	E7a_E8a	KnownJunction	0	2.30	4.65	0.00	10.35	0.00	1.50	0.00	2.54	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.32	0.00	2.48	2.51	2.63	9.05	3.95	10.14	1.80	1.95
47	Ix	Intron	0	9.56	2.12	0.55	8.26	0.00	7.27	4.31	3.65	7.47	4.31	0.20	5.49	0.43	6.63	19.11	22.22	12.79	1.90	5.78	8.97	4.23	0.89	0.00	9.24	5.20	1.04	1.51	2.69	2.87
48	Ix_AR1	ActiveIntronRegion	0	1.68	0.00	0.00	21.94	0.00	1.43	3.86	0.40	0.00	0.00	0.00	0.75	0.00	0.79	4.38	5.61	2.31	0.00	0.00	0.00	2.48	0.00	0.00	1.87	3.60	0.00	0.00	0.57	0.00
49	Ix_AR2	ActiveIntronRegion	0	13.17	3.04	0.78	7.76	0.00	9.52	5.77	5.32	8.78	3.56	0.00	6.99	0.41	8.26	23.37	27.12	16.67	3.03	6.03	8.35	3.96	1.68	0.00	12.97	6.58	1.31	2.88	2.91	3.21
50	Ix_AR3	ActiveIntronRegion	0	6.41	1.37	0.36	6.03	0.00	5.51	2.45	2.07	7.35	6.24	0.51	4.51	0.55	5.74	16.52	19.34	9.93	0.82	6.75	11.78	5.02	0.00	0.00	5.79	3.68	0.90	0.00	2.87	3.06
51	E8_Aa	NovelBoundary	0	20.11	8.63	0.00	10.78	0.00	11.43	4.98	2.54	10.26	10.83	0.00	0.00	4.46	11.41	34.48	31.67	13.26	0.00	8.09	8.02	7.10	2.14	0.00	8.37	3.49	2.19	9.59	4.22	3.86
52	E8a_E9a	KnownJunction	0	5.25	0.00	2.42	51.12	7.37	16.42	2.40	2.39	6.30	0.00	8.57	2.44	3.12	7.44	0.00	0.00	0.90	0.00	0.00	0.00	1.97	0.00	0.00	2.69	1.93	9.05	9.94	9.97	5.18
53	ER8a	ExonRegion	0	4.05	3.28	3.32	14.63	0.00	5.19	2.69	3.34	0.00	2.30	4.76	4.31	3.03	1.51	5.19	7.97	0.00	3.23	0.00	13.64	0.11	1.80	3.62	2.23	6.46	4.07	7.33	2.60	1.34
54	E8_Db	NovelBoundary	0	14.98	8.53	2.82	0.00	0.00	19.95	11.84	0.00	12.61	7.23	3.73	9.19	0.00	10.41	8.37	29.76	18.68	28.51	0.00	10.42	3.65	2.48	0.00	8.91	8.87	0.00	0.00	1.93	1.85
55	E8b_E9a	KnownJunction	0	5.49	0.00	5.71	9.49	0.00	12.32	9.44	4.53	0.00	5.43	5.16	5.60	4.78	3.72	7.57	14.69	0.00	4.62	0.00	7.61	1.72	0.00	2.07	2.51	3.64	2.19	0.00	2.29	0.00
56	ER8b	ExonRegion	0	6.43	1.97	4.49	11.70	0.00	11.00	8.06	4.42	0.45	3.90	4.76	4.95	3.90	2.72	5.60	10.12	0.00	4.91	0.00	7.59	1.57	0.18	2.35	4.30	5.86	4.40	2.20	3.26	0.27
57	Ix	Intron	0	8.21	1.95	0.34	4.34	0.00	3.33	4.47	2.23	3.27	4.07	2.64	1.37	1.57	5.56	23.51	17.51	6.32	10.29	5.15	3.73	3.74	0.36	0.00	9.54	6.63	0.63	0.37	1.64	2.29
58	Ix_AR1	ActiveIntronRegion	0	9.25	1.87	0.39	4.96	0.00	3.81	4.94	2.47	3.69	4.66	2.70	1.52	1.79	6.32	25.49	19.64	7.14	11.45	5.45	4.27	4.28	0.42	0.00	10.59	7.13	0.73	0.42	1.88	2.62
59	Ix_SR1	SilentIntronRegion	0	1.07	2.63	0.00	0.00	0.00	0.00	1.28	0.55	0.45	0.00	2.34	0.33	0.00	0.33	10.45	2.87	0.67	2.37	3.32	0.00	0.00	0.00	0.00	2.44	3.34	0.00	0.00	0.00	0.00
60	ER9a	ExonRegion	0	0.37	0.00	0.43	1.24	0.00	0.97	0.53	0.45	0.17	0.40	0.35	0.53	0.33	0.38	0.41	0.28	0.23	0.23	0.00	0.97	0.41	0.00	0.17	0.30	0.59	0.06	0.28	0.07	0.00
61	E9_Da	KnownBoundary	0	0.00	4.85	0.00	0.00	0.00	1.96	2.35	2.09	1.34	3.83	10.44	6.72	7.45	10.41	0.00	3.75	7.27	0.00	0.00	0.00	1.68	0.00	6.94	5.26	5.34	4.12	2.09	2.11	1.35
62	ER9b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.12	0.00	0.00	0.00	0.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	ER9c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00