Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C11orf17	Gene	0	81.64	59.39	36.92	52.01	82.40	82.24	32.53	99.01	38.57	46.78	44.53	38.20	96.33	46.78	68.88	32.32	59.24	41.54	61.25	67.82	44.39	107.53	45.71	106.60	71.10	81.31	56.90	34.12	87.53
2	426510	Transcript	0	0.19	3.35	0.86	9.38	0.00	1.31	1.04	3.09	1.16	0.03	0.00	2.57	0.00	1.85	2.89	0.46	7.01	1.41	1.65	2.84	0.61	0.51	0.00	2.63	1.49	2.33	0.87	5.05	0.92
3	299576	Transcript	0	55.15	38.10	35.83	21.35	12.82	51.45	49.09	86.34	18.03	36.83	38.40	28.95	115.12	33.94	45.05	20.88	47.34	18.49	113.29	71.45	36.62	25.14	55.75	98.22	61.90	70.98	44.63	26.64	148.96
4	309357	Transcript	0	2.71	4.56	1.54	0.00	7.37	0.00	0.00	0.00	2.56	3.08	0.00	0.00	30.48	1.04	0.00	0.00	0.00	4.62	16.18	0.00	1.56	0.00	10.54	0.00	0.00	3.86	4.87	0.00	0.00
5	309377	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	396648	Transcript	0	5.98	2.49	1.55	6.43	5.03	1.30	1.64	1.18	0.35	2.50	0.39	1.50	3.08	1.56	5.54	3.18	6.99	4.21	2.67	7.26	2.15	3.06	3.29	9.20	1.87	6.23	1.42	1.24	2.33
7	ER1a	ExonRegion	0	17.39	2.72	8.51	30.92	42.63	3.93	9.01	18.67	5.18	7.14	2.75	7.19	19.37	3.89	6.40	5.64	6.30	10.88	6.08	8.87	5.18	22.97	12.17	5.07	5.94	20.21	15.31	5.40	23.05
8	E1_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.42
9	E1a_E2b	KnownJunction	0	59.28	12.89	22.62	76.57	173.31	16.96	47.37	69.03	16.41	35.51	11.55	22.32	76.55	18.81	33.49	31.59	23.57	50.86	16.18	41.93	28.52	94.85	58.80	24.70	29.85	94.37	60.23	25.88	102.90
10	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.48	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.29	0.00	2.75	0.00	5.75	0.00	0.00	0.00
11	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	14.15	0.00	2.29	0.00	0.00	0.00	0.00	0.00	2.48	0.00	7.97	0.00	2.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.39
12	E2_Aa	NovelBoundary	0	0.00	0.00	5.48	21.57	6.78	0.00	0.00	0.00	5.73	0.00	0.00	0.00	0.00	1.95	0.00	0.00	8.49	4.62	0.00	4.13	2.05	0.00	0.00	0.00	1.67	0.00	0.00	2.29	2.84
13	ER2a	ExonRegion	0	5.98	2.49	1.55	6.43	5.03	1.30	1.64	1.18	0.35	2.50	0.39	1.50	3.08	1.56	5.54	3.18	6.99	4.21	2.67	7.26	2.15	3.06	3.29	9.20	1.87	6.23	1.42	1.24	2.33
14	E2_Ab	KnownBoundary	0	14.27	0.00	0.00	0.00	0.00	3.76	2.12	2.19	1.46	1.88	1.33	6.63	5.32	7.62	16.74	3.82	11.01	4.62	8.09	17.20	4.09	6.13	2.27	10.77	5.27	1.93	7.45	4.40	1.55
15	ER2b	ExonRegion	0	82.53	43.56	36.45	47.65	103.34	73.28	57.32	96.75	36.79	40.20	21.09	35.03	98.11	35.52	80.85	39.09	51.71	56.31	49.90	78.05	41.78	107.82	64.78	70.80	47.99	114.77	31.60	30.48	109.83
16	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	18.49	0.00	0.00	0.00	0.00	0.00	0.00	3.26	0.00	0.00	2.11	0.00
17	E2a_E3a	KnownJunction	0	36.16	51.97	25.94	10.35	46.86	107.58	116.66	97.74	67.97	87.12	28.60	30.09	107.54	36.56	78.73	55.31	50.42	64.47	80.92	36.64	73.76	54.31	133.12	35.65	97.55	280.19	48.21	60.25	102.44
18	E2a_E4a	KnownJunction	0	55.15	38.10	35.83	21.35	12.82	51.45	49.09	86.34	18.03	36.83	38.40	28.95	115.12	33.94	45.05	20.88	47.34	18.49	113.29	71.45	36.62	25.14	55.75	98.22	61.90	70.98	44.63	26.64	148.96
19	E3_Aa	NovelBoundary	0	2.65	0.00	0.00	0.00	0.00	5.52	0.00	2.09	2.92	7.27	4.08	4.46	7.80	1.06	0.00	3.67	8.51	0.00	0.00	0.00	1.72	0.00	0.00	0.00	5.53	8.41	2.39	4.45	17.27
20	ER3a	ExonRegion	0	67.43	61.36	26.08	35.03	84.01	93.68	40.44	83.89	24.65	42.35	50.04	33.06	94.43	38.89	78.13	20.25	57.18	25.00	38.83	21.86	31.19	74.62	58.62	52.82	53.54	92.28	68.22	33.31	49.10
21	E3_Da	NovelBoundary	0	5.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.46	0.00	1.33	0.00	0.00	7.25	9.25	0.00	0.00	0.00	1.85	0.00	0.00	0.00	4.12	0.00	0.00	0.00
22	E3a_E4a	KnownJunction	0	66.89	66.02	42.43	73.98	125.71	98.30	26.78	68.93	19.46	47.89	57.73	36.54	99.74	28.67	122.98	19.20	49.61	19.26	40.24	22.00	44.40	98.94	40.58	55.09	45.39	72.78	71.42	17.97	35.19
23	E3a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	I3	Intron	0	3.64	0.73	0.71	0.70	1.60	3.95	0.46	0.78	0.77	1.51	1.75	0.95	0.53	2.13	1.65	1.17	4.98	2.78	1.98	0.99	2.38	0.41	0.30	2.53	1.54	0.92	0.06	0.16	1.36
25	I3_AR1	ActiveIntronRegion	0	5.24	0.00	1.24	1.01	2.07	5.54	0.57	1.56	0.81	1.65	2.21	1.07	0.32	2.13	2.20	1.59	6.18	3.95	2.26	1.17	3.86	0.33	0.38	3.52	1.92	0.89	0.13	0.23	1.59
26	I3_SR2	SilentIntronRegion	0	3.77	2.95	0.12	0.94	1.93	2.97	0.26	0.00	0.53	1.33	2.35	1.33	1.20	3.22	0.61	1.42	6.68	2.53	2.10	1.09	1.35	0.80	0.48	2.41	1.68	1.37	0.00	0.21	1.35
27	E4_Aa	NovelBoundary	0	3.01	8.14	2.32	0.00	0.00	1.84	0.00	0.00	5.60	1.68	9.11	0.00	0.00	4.36	16.74	10.40	12.63	0.00	8.09	7.03	3.09	0.00	0.00	2.27	0.00	5.62	0.00	0.00	3.43
28	ER4a	ExonRegion	0	153.11	110.59	106.16	145.35	215.63	174.87	61.68	233.99	53.48	80.48	110.67	73.73	202.96	86.17	119.05	64.02	107.10	66.41	100.17	148.40	84.66	196.84	94.75	195.98	141.94	140.04	136.39	53.93	199.57
29	E4_Da	NovelBoundary	0	2.30	0.00	1.54	0.00	0.00	1.76	0.00	0.00	0.00	0.00	1.61	4.22	1.46	0.00	0.00	0.00	0.92	0.00	0.00	0.00	1.60	0.00	0.00	0.00	0.00	4.03	0.00	0.00	0.00
30	E4a_E5a	KnownJunction	0	192.76	134.37	63.23	141.06	215.90	230.32	64.14	198.37	64.99	79.33	83.83	67.89	196.54	87.92	178.99	64.87	123.78	73.98	120.94	153.41	91.05	181.29	81.11	239.68	145.25	181.78	86.23	62.54	174.01
31	E4a_E6a	KnownJunction	0	2.71	4.56	1.54	0.00	7.37	0.00	0.00	0.00	2.56	3.08	0.00	0.00	30.48	1.04	0.00	0.00	0.00	4.62	16.18	0.00	1.56	0.00	10.54	0.00	0.00	3.86	4.87	0.00	0.00
32	I4_SR1	SilentIntronRegion	0	1.08	1.39	0.00	0.00	0.00	1.41	0.00	0.00	0.39	2.71	2.91	1.76	0.00	1.23	0.00	1.01	1.77	0.92	0.00	0.00	2.10	0.00	0.00	0.00	0.00	0.64	0.00	0.00	1.35
33	I4_AR1	ActiveIntronRegion	0	1.98	1.39	0.00	0.00	0.00	2.28	0.00	0.17	0.21	0.64	0.00	1.05	0.25	1.38	0.71	0.25	1.89	0.14	0.30	0.65	1.53	0.00	0.00	1.90	0.01	1.07	0.00	0.46	1.33
34	I4_SR3	SilentIntronRegion	0	2.18	0.00	0.00	0.00	0.80	2.02	0.33	0.30	1.01	0.47	0.39	1.10	0.00	0.49	0.57	0.00	1.02	1.26	1.56	0.00	1.66	0.00	0.00	2.69	0.23	0.21	1.79	1.33	0.65
35	E5_Aa	NovelBoundary	0	0.00	0.00	1.02	0.00	0.00	1.80	0.00	0.00	1.55	1.88	1.61	0.00	0.00	0.00	8.37	3.82	4.82	0.00	8.09	0.00	3.05	0.00	0.00	2.57	0.00	0.00	0.00	0.00	4.82
36	ER5a	ExonRegion	0	194.42	137.93	68.77	132.26	206.83	214.86	73.06	307.30	73.38	108.87	102.03	110.74	206.78	107.04	136.56	68.55	143.60	70.72	158.57	155.45	97.08	228.35	84.56	259.17	186.87	184.00	104.24	61.46	167.66
37	E5_Da	KnownBoundary	0	2.36	0.00	0.00	17.04	0.00	3.49	0.00	4.98	0.00	0.00	0.00	3.64	0.00	2.13	0.00	3.75	13.51	4.62	0.00	0.00	5.09	2.48	0.00	11.07	0.00	0.00	4.17	0.00	3.17
38	E5a_E6a	KnownJunction	0	212.64	203.50	72.53	94.04	264.97	185.81	74.67	344.93	69.28	121.15	128.25	115.12	267.94	119.27	132.35	107.48	133.98	83.99	267.05	182.77	115.80	282.71	84.66	296.45	263.98	178.52	116.44	38.87	216.54
39	ER5b	ExonRegion	0	0.19	3.35	0.86	9.38	0.00	1.31	1.04	3.09	1.16	0.03	0.00	2.57	0.00	1.85	2.89	0.46	7.01	1.41	1.65	2.84	0.61	0.51	0.00	2.63	1.49	2.33	0.87	5.05	0.92
40	E5_Db	NovelBoundary	0	4.78	0.00	2.72	0.00	7.37	13.58	2.92	2.54	1.19	8.99	0.00	5.12	0.00	2.08	0.00	3.21	21.92	9.25	8.09	0.00	5.86	0.00	0.00	18.78	3.86	3.60	10.44	0.00	11.59
41	I5	Intron	0	6.40	3.67	1.93	5.05	2.34	4.30	1.25	2.49	1.47	3.82	0.70	2.68	2.22	3.15	5.52	1.66	11.36	4.36	3.06	1.44	2.41	1.37	0.51	6.61	5.40	1.42	0.46	2.48	3.48
42	I5_AR1	ActiveIntronRegion	0	6.73	3.88	1.90	4.87	2.73	4.85	1.13	2.16	1.26	4.44	0.52	2.84	1.69	2.47	5.63	1.82	11.75	4.58	4.08	1.78	2.77	1.58	0.58	5.82	5.83	0.94	0.59	2.40	3.62
43	I5_SR1	SilentIntronRegion	0	5.65	3.17	2.02	5.51	1.41	3.00	1.55	3.30	1.99	2.36	1.14	2.29	3.52	4.80	5.27	1.29	10.45	3.85	0.61	0.65	1.56	0.87	0.35	8.52	4.37	2.57	0.18	2.69	3.16
44	E6_Aa	NovelBoundary	0	5.72	9.70	2.32	0.00	0.00	3.30	2.35	8.76	4.78	5.51	1.61	3.10	1.97	6.96	0.00	3.21	11.55	0.00	0.00	0.00	0.00	0.00	0.00	15.13	3.30	1.89	0.00	2.29	6.47
45	ER6a	ExonRegion	0	96.77	75.58	41.51	52.59	77.94	95.05	29.86	104.94	52.64	59.02	56.64	43.85	112.81	60.53	80.62	37.35	71.10	49.92	79.17	78.46	55.53	134.17	47.42	142.47	90.57	85.87	72.57	44.52	99.73