Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	SMPD1	Gene	0	66.87	68.80	86.03	59.72	61.13	89.56	28.93	69.28	57.71	92.89	56.79	80.96	38.87	88.60	47.13	84.39	149.37	93.74	32.42	54.33	51.57	123.85	78.97	127.06	77.19	101.75	60.05	99.67	91.89
2	342245	Transcript	0	91.84	110.88	152.13	125.66	159.22	243.36	49.64	106.32	83.14	208.20	144.50	113.58	57.98	131.84	58.38	112.82	196.51	159.77	62.90	98.18	161.85	163.88	142.73	238.57	157.73	224.55	144.75	202.94	132.75
3	299397	Transcript	0	4.29	9.50	13.98	0.00	7.54	6.50	4.09	6.67	5.89	11.16	12.96	3.68	3.62	15.10	7.57	5.95	15.08	9.44	4.89	13.07	4.82	7.75	11.48	11.69	5.02	17.20	7.62	11.15	15.27
4	356761	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	IG30_SR7	SilentIntergenicRegion	0	0.00	0.00	0.00	7.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.25	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	IG30_AR7	ActiveIntergenicRegion	0	0.00	0.00	0.00	10.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.24	0.00	0.00	0.00	0.00	0.00	2.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER1a	ExonRegion	0	48.39	24.58	48.55	43.89	49.53	36.22	14.68	24.09	9.80	48.06	23.40	39.46	12.82	42.99	16.63	54.84	84.46	71.50	12.83	32.40	17.91	78.90	53.82	49.85	28.69	47.70	23.12	54.10	33.55
8	E1_Da	NovelBoundary	0	3.01	0.00	2.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	3.17	0.00	0.00	0.00	0.00	4.33	0.00	0.00	0.00	3.86	0.00	0.00	0.00
9	E1a_E2a	KnownJunction	0	50.37	52.45	26.31	56.30	82.09	92.85	72.03	90.13	33.62	162.14	96.83	120.81	49.33	138.77	15.35	110.23	273.33	97.74	48.33	66.24	50.14	145.51	167.65	127.35	80.32	201.48	76.19	232.57	146.08
10	I1_AR1	ActiveIntronRegion	0	2.34	0.00	0.00	0.00	0.00	0.50	2.02	0.67	0.41	1.71	0.00	0.22	0.00	0.00	0.00	2.53	7.01	0.00	0.00	0.00	1.43	0.82	0.00	0.00	0.00	2.00	0.00	3.56	0.00
11	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.61	0.00	4.98	1.55	2.04	1.39	0.00	0.00	0.00	0.00	0.00	8.28	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	2.19	0.00	0.00	1.32
12	ER2a	ExonRegion	0	70.74	56.06	80.82	33.73	58.81	95.41	29.99	68.31	37.46	93.01	51.20	83.85	31.86	97.94	33.71	83.02	160.69	98.40	27.92	57.44	54.04	127.63	74.37	111.31	82.67	108.08	47.78	110.77	85.83
13	E2_Da	KnownBoundary	0	6.90	14.25	17.49	0.00	6.93	10.74	5.32	7.42	11.82	10.63	5.88	4.76	5.95	18.74	8.97	6.73	29.40	18.49	15.96	17.86	4.09	11.52	4.38	21.53	6.97	14.93	0.00	20.08	14.53
14	E2a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E2a_E3a	KnownJunction	0	76.92	122.74	162.97	48.53	117.31	281.96	50.35	110.43	70.35	232.44	156.62	127.26	54.52	135.07	62.98	141.29	232.77	136.26	56.42	82.37	224.10	153.34	144.20	227.84	187.08	253.28	130.11	217.74	111.95
16	E2a_E4a	NovelJunction	0	0.00	4.46	2.79	0.00	0.00	0.00	2.92	5.08	0.00	8.15	0.00	2.77	0.00	0.00	9.17	0.00	2.12	0.00	0.00	6.29	2.05	0.00	2.51	0.00	0.00	4.38	0.00	0.00	6.40
17	E2a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.02	0.00	0.00	0.00	0.00	0.00	0.00
18	ER2b	ExonRegion	0	4.29	9.50	13.98	0.00	7.54	6.50	4.09	6.67	5.89	11.16	12.96	3.68	3.62	15.10	7.57	5.95	15.08	9.44	4.89	13.07	4.82	7.75	11.48	11.69	5.02	17.20	7.62	11.15	15.27
19	E2_Db	NovelBoundary	0	3.01	4.46	8.02	0.00	0.00	10.67	0.00	0.00	27.04	36.83	6.67	0.00	0.00	9.53	9.77	15.22	15.87	19.26	8.09	16.29	1.97	2.38	4.38	14.71	7.08	19.35	0.00	13.34	4.89
20	E2b_E3a	NovelJunction	0	8.85	0.00	4.04	0.00	0.00	18.07	0.00	4.63	1.13	11.42	1.33	8.61	0.00	9.28	17.14	11.02	12.09	0.00	0.00	3.72	5.41	4.52	0.00	23.09	6.93	9.40	0.00	8.54	5.71
21	E2b_E4a	KnownJunction	0	3.01	3.68	12.48	0.00	7.37	8.56	2.92	2.29	1.25	3.71	10.76	1.87	2.87	11.65	0.00	7.65	2.68	9.25	0.00	7.86	7.34	6.37	18.32	5.74	5.34	20.94	18.24	4.00	16.41
22	ER2c	ExonRegion	0	5.00	3.28	13.46	0.00	4.98	5.50	2.02	1.84	3.75	11.55	12.69	1.65	2.60	12.09	5.60	5.06	7.35	14.56	0.00	5.62	5.71	7.21	18.08	6.45	4.29	22.53	12.82	3.26	17.90
23	I2	Intron	0	2.39	5.99	1.24	2.67	0.00	6.65	0.00	1.37	8.96	5.40	3.10	6.19	0.97	2.86	0.00	3.69	14.45	1.55	1.19	2.79	2.12	4.03	2.69	6.41	3.19	4.68	2.05	3.03	11.21
24	I2_SR1	SilentIntronRegion	0	2.45	6.13	1.27	2.73	0.00	6.80	0.00	1.40	9.16	5.45	3.17	6.33	0.99	2.92	0.00	3.78	14.77	1.59	1.22	2.85	2.17	4.12	2.73	6.53	3.26	4.79	2.09	3.10	11.46
25	Ix	Intron	0	7.36	6.32	4.71	2.64	0.60	10.11	1.73	4.51	14.09	9.20	3.21	5.82	3.33	9.09	16.69	10.95	24.71	6.69	5.09	2.27	4.02	1.55	1.77	12.91	5.43	5.78	2.02	5.60	9.35
26	Ix_AR1	ActiveIntronRegion	0	7.38	6.33	4.73	2.64	0.60	10.14	1.73	4.53	14.13	9.23	3.22	5.83	3.34	9.11	16.73	10.98	24.77	6.71	5.10	2.28	4.03	1.55	1.78	12.94	5.45	5.79	2.03	5.61	9.38
27	E3_Aa	NovelBoundary	0	5.31	0.00	6.75	0.00	6.48	5.03	0.00	1.89	14.89	3.79	0.00	2.68	0.00	5.58	18.74	6.66	28.54	14.64	0.00	3.56	3.61	0.00	0.00	11.25	8.49	0.00	2.04	5.93	1.29
28	ER3a	ExonRegion	0	85.70	104.62	139.79	117.30	107.77	157.86	39.65	74.47	54.42	148.10	97.62	95.06	47.83	114.54	38.19	98.02	159.26	113.55	51.36	85.89	94.56	129.25	113.29	196.94	116.05	137.74	102.28	128.95	106.04
29	E3_Da	NovelBoundary	0	8.32	4.75	5.36	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	1.69	1.43	4.50	0.00	2.98	10.26	9.76	0.00	4.13	1.97	0.00	2.51	0.00	6.59	3.56	0.00	4.40	0.00
30	E3a_E4a	KnownJunction	0	112.90	105.29	153.63	211.16	252.59	290.25	58.93	134.07	124.64	244.07	179.27	118.43	71.59	145.92	73.95	99.14	197.50	229.50	80.92	126.28	166.90	209.05	170.70	290.94	170.07	282.63	201.87	262.13	180.25
31	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	Ix	Intron	0	2.39	1.43	1.12	1.60	0.00	4.29	0.00	0.00	3.00	2.25	0.00	2.20	0.72	4.03	4.70	4.97	9.64	2.65	4.27	1.23	2.86	2.01	0.81	4.31	1.27	1.75	1.63	1.45	1.04
33	Ix_AR1	ActiveIntronRegion	0	2.41	1.45	1.13	1.61	0.00	4.32	0.00	0.00	3.02	2.27	0.00	2.22	0.73	4.07	4.74	5.02	9.73	2.66	4.31	1.24	2.88	2.03	0.81	4.35	1.28	1.77	1.65	1.46	1.05
34	E4_Aa	NovelBoundary	0	5.19	9.11	5.46	0.00	6.93	8.86	0.00	0.00	7.95	3.87	0.00	9.49	1.50	6.47	17.74	3.82	33.81	0.00	0.00	4.13	10.83	4.28	0.00	17.65	3.45	8.75	6.31	2.29	0.00
35	ER4a	ExonRegion	0	106.34	140.53	153.39	151.76	135.15	193.92	54.56	99.13	105.63	189.40	130.39	107.53	61.15	145.23	88.45	154.60	192.77	135.68	69.47	90.53	102.11	194.74	144.71	285.80	167.36	177.61	171.38	153.44	169.93
36	E4_Da	NovelBoundary	0	5.19	0.00	6.63	0.00	0.00	10.47	0.00	0.00	2.65	5.99	0.00	1.33	2.48	8.06	16.74	3.44	21.79	0.00	0.00	6.12	2.05	4.76	2.51	2.57	1.74	8.50	2.44	2.29	1.68
37	E4a_E5a	KnownJunction	0	75.27	177.90	147.42	195.42	89.31	135.71	57.50	87.04	79.60	171.45	106.92	112.56	53.18	122.70	114.01	134.48	189.75	112.25	48.55	86.42	91.73	128.79	135.14	281.79	131.88	153.63	110.83	113.86	165.23
38	Ix	Intron	0	8.12	1.40	0.84	1.81	0.00	6.25	0.51	1.86	2.83	4.74	1.80	2.64	0.49	4.91	11.15	5.46	16.58	3.40	1.61	0.50	1.80	3.64	1.37	7.06	2.17	2.78	4.16	0.82	2.70
39	Ix_AR1	ActiveIntronRegion	0	0.27	0.00	0.00	0.00	0.00	0.00	0.00	0.69	0.00	0.18	0.00	0.00	0.81	0.00	0.00	0.00	2.00	1.02	0.00	0.00	1.25	1.13	0.00	0.00	0.00	0.00	5.49	0.00	0.00
40	Ix_SR1	SilentIntronRegion	0	10.19	1.44	0.37	3.21	0.00	5.46	0.87	1.60	2.99	6.86	1.52	2.71	0.81	4.52	10.32	5.99	20.26	4.48	0.00	0.00	2.65	3.73	2.43	8.81	2.08	3.23	6.51	0.73	4.46
41	Ix_AR2	ActiveIntronRegion	0	6.10	1.52	1.64	0.00	0.00	8.18	0.05	2.41	2.97	2.22	2.44	2.87	0.00	6.12	13.79	5.39	13.11	2.17	4.18	1.30	0.66	3.86	0.00	5.41	2.57	2.48	0.70	1.07	0.48
42	E5_Aa	NovelBoundary	0	14.22	0.00	13.25	0.00	7.37	1.46	0.00	0.00	1.55	0.00	0.00	4.19	1.21	1.66	25.11	18.44	23.39	9.25	0.00	4.13	8.06	1.85	2.51	7.72	0.00	3.73	3.88	6.20	1.68
43	ER5a	ExonRegion	0	80.64	118.89	156.55	90.06	86.22	141.85	46.22	121.84	123.51	151.63	102.78	126.48	64.35	142.13	84.43	113.52	219.68	124.44	61.72	71.40	78.33	179.78	133.86	242.65	133.93	140.24	115.01	132.28	157.06
44	E5_Da	NovelBoundary	0	10.56	0.00	9.54	0.00	7.37	16.00	5.44	9.16	16.72	10.27	5.31	20.42	0.00	10.90	49.03	34.73	80.11	4.62	8.09	23.32	7.74	18.09	2.07	23.63	22.69	7.94	14.46	17.52	16.97
45	E5a_E6a	KnownJunction	0	66.12	82.12	133.92	60.39	50.55	128.11	37.36	104.76	84.69	143.36	124.67	118.37	46.14	88.56	25.51	108.09	137.69	93.63	64.74	41.85	43.80	158.10	135.09	213.48	120.70	147.50	88.31	140.99	130.01
46	Ix	Intron	0	16.82	10.53	7.11	4.69	3.19	6.29	1.32	11.44	6.42	8.50	1.17	9.89	0.85	8.58	11.42	14.15	37.58	12.28	5.22	4.50	5.60	11.20	2.96	21.10	7.48	11.82	1.20	11.19	5.03
47	Ix_AR1	ActiveIntronRegion	0	17.04	10.67	7.20	4.75	3.23	6.36	1.34	11.58	6.50	8.61	1.18	10.02	0.86	8.69	11.56	14.33	38.06	12.44	5.29	4.56	5.67	11.34	2.99	21.37	7.56	11.97	1.21	11.34	5.10
48	E6_Aa	NovelBoundary	1	20.11	13.09	18.84	10.14	0.00	16.34	0.00	4.23	20.13	18.65	10.63	21.75	8.02	22.75	8.37	37.64	95.91	27.74	0.00	10.75	7.26	10.65	11.52	22.67	6.40	21.46	15.51	23.00	24.30
49	ER6a	ExonRegion	0	67.27	87.58	86.81	70.80	51.43	86.59	30.00	87.61	93.50	92.54	60.67	93.69	54.75	90.51	72.04	92.83	166.01	93.22	37.22	53.53	53.24	135.50	78.51	144.19	77.94	111.04	67.42	104.02	115.05