Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	FXC1	Gene	0	213.19	129.61	135.59	192.52	217.45	186.87	208.63	205.18	108.17	193.98	146.18	166.35	155.61	165.90	156.66	131.26	188.17	142.38	123.22	218.08	92.44	164.12	128.26	157.23	160.01	69.88	129.12	98.66	123.00
2	254616	Transcript	0	128.70	89.13	80.67	116.36	138.57	121.84	127.29	118.92	70.98	126.36	95.66	101.08	94.43	103.59	94.50	78.17	113.54	84.37	82.07	134.77	60.69	95.50	80.92	106.23	103.50	42.29	85.13	62.05	78.08
3	464330	Transcript	0	1.64	0.00	0.84	3.76	5.10	0.34	2.69	0.96	0.76	1.19	0.01	0.78	2.01	0.35	3.51	1.30	2.15	0.93	0.00	2.26	0.41	2.34	0.96	0.00	0.01	4.02	1.02	2.66	1.10
4	472836	Transcript	0	0.34	0.00	1.25	0.00	3.07	0.00	1.03	0.01	0.00	0.00	0.64	1.11	0.00	1.38	0.00	2.35	3.89	3.12	0.49	0.38	0.79	0.01	0.01	0.00	0.00	0.00	0.01	0.00	0.34
5	ER1a	ExonRegion	0	2.23	7.96	1.77	0.00	10.73	1.32	5.12	4.74	0.00	2.00	1.37	0.52	2.50	0.56	0.00	0.00	0.31	0.00	9.40	6.49	2.08	3.33	3.76	3.56	0.99	2.72	0.00	4.39	0.72
6	E1_Ac	KnownBoundary	0	49.78	16.29	46.99	94.69	255.39	26.90	91.20	137.50	5.06	18.57	14.68	30.63	34.14	23.20	23.52	15.53	27.82	106.34	32.37	43.09	17.85	61.79	20.88	20.46	7.73	29.27	1.84	38.33	13.87
7	ER1b	ExonRegion	0	32.29	14.99	20.83	47.99	90.91	17.18	61.86	82.39	1.83	10.65	8.85	12.29	18.19	10.83	10.85	25.31	15.90	53.22	26.87	36.36	13.02	43.83	20.79	10.76	5.54	20.23	0.00	21.50	6.79
8	ER1c	ExonRegion	0	258.13	37.96	196.15	485.61	387.55	107.43	303.52	422.32	39.53	75.16	47.85	161.69	162.98	90.13	153.39	216.00	197.51	278.88	90.01	238.44	74.07	369.80	141.25	22.15	50.66	143.51	45.42	141.57	81.52
9	E1_Da	NovelBoundary	0	0.00	0.00	3.09	0.00	0.00	1.73	0.00	0.00	0.00	0.00	0.00	2.56	3.38	0.00	0.00	0.00	2.79	0.00	0.00	0.00	0.00	2.24	0.00	0.00	0.00	3.69	0.00	0.00	0.00
10	E1a_E2a	KnownJunction	0	381.93	59.43	376.17	678.57	468.94	137.93	340.14	527.17	66.60	115.64	66.27	255.00	235.68	147.61	269.68	223.76	393.24	116.87	48.55	271.91	92.45	509.51	160.16	28.29	97.06	184.23	78.47	196.93	157.94
11	E1a_E3a	KnownJunction	0	8.08	0.00	4.16	18.77	25.50	1.69	12.76	4.78	3.78	5.91	0.00	3.86	9.97	1.20	17.54	6.50	10.69	4.62	0.00	11.25	2.05	11.62	4.73	0.00	0.00	20.04	5.07	13.30	5.41
12	I1	Intron	0	4.35	3.27	14.43	9.10	0.00	1.40	1.53	2.34	1.71	2.56	2.11	2.50	2.14	1.38	0.00	3.78	3.41	1.63	4.05	2.60	3.98	10.52	5.05	2.73	5.08	1.99	1.39	2.90	2.21
13	I1_AR1	ActiveIntronRegion	0	4.39	3.30	14.57	9.19	0.00	1.41	1.55	2.36	1.73	2.59	2.14	2.52	2.16	1.39	0.00	3.82	3.44	1.65	4.09	2.63	4.02	10.62	5.10	2.76	5.12	2.01	1.41	2.92	2.23
14	E2_Aa	NovelBoundary	0	14.10	0.00	2.62	0.00	7.37	12.85	0.00	6.92	2.50	0.00	1.33	3.04	8.92	5.96	8.57	0.00	2.30	4.62	16.18	11.25	21.38	28.64	6.35	13.58	7.35	7.51	0.00	4.27	1.49
15	ER2a	ExonRegion	0	115.70	15.02	120.59	125.53	77.16	33.54	80.00	159.73	21.42	37.72	23.89	90.59	85.40	66.56	61.32	54.41	139.12	36.30	31.40	80.84	21.60	143.13	49.90	19.97	41.96	44.48	16.08	51.94	53.04
16	E2_Da	NovelBoundary	0	0.00	0.00	1.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	0.00	2.19	0.00	0.00	0.00	2.10	0.00	2.16	0.00
17	E2a_E3a	KnownJunction	1	175.07	20.55	17.47	16.61	5.16	28.43	57.84	183.44	16.17	23.21	12.31	41.87	32.42	85.10	35.68	18.36	39.66	62.42	24.28	82.78	10.59	230.64	34.33	41.03	19.02	14.03	2.53	7.55	18.78
18	I2	Intron	0	4.55	0.00	0.44	0.00	1.30	0.73	0.54	0.00	1.04	0.38	0.00	0.49	0.00	0.72	0.00	2.64	1.59	2.13	0.85	0.00	0.76	0.00	0.00	1.71	0.38	0.83	0.00	0.87	0.00
19	I2_SR1	SilentIntronRegion	0	5.12	0.00	0.75	0.00	2.20	1.24	0.39	0.00	1.77	0.65	0.00	0.28	0.00	0.82	0.00	3.81	1.28	2.03	0.00	0.00	0.98	0.00	0.00	2.91	0.00	0.03	0.00	0.74	0.00
20	E3_Aa	NovelBoundary	0	5.01	0.00	1.54	9.92	0.00	0.00	2.17	1.89	0.00	1.76	4.71	0.00	0.00	1.13	0.00	3.37	2.39	0.00	8.09	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
21	ER3a	ExonRegion	0	276.24	67.75	175.91	162.73	204.79	113.91	271.71	327.30	54.53	133.86	94.33	200.42	206.41	170.76	207.20	169.68	220.74	191.21	114.09	282.58	54.67	238.29	132.31	65.56	116.76	91.57	61.27	107.17	100.72
22	E3_Da	KnownBoundary	0	390.96	125.74	419.54	470.64	475.27	200.66	441.70	457.00	74.33	258.53	181.52	234.03	241.67	217.98	280.84	234.77	240.92	245.82	145.66	454.27	85.84	202.20	151.10	114.19	220.87	92.18	148.69	106.22	114.46
23	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	7.37	0.00	2.17	0.00	0.00	0.00	1.58	2.89	0.00	2.97	0.00	3.29	10.60	10.02	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35
24	E3a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER3b	ExonRegion	0	255.18	170.31	159.58	232.72	266.41	242.36	249.46	233.10	141.96	250.73	189.94	201.63	186.36	206.62	189.01	156.33	226.76	168.73	154.75	263.05	119.29	187.68	158.09	208.90	206.01	81.87	170.27	119.72	155.43
26	E3_Db	NovelBoundary	0	39.11	4.85	7.92	8.63	12.08	17.69	0.00	0.00	13.89	15.70	15.25	28.46	8.12	14.73	7.57	13.69	25.84	46.88	24.28	9.68	17.73	4.96	7.34	13.64	14.59	9.87	5.07	12.22	11.59
27	I3	Intron	0	9.77	5.00	2.39	3.07	4.32	7.58	2.50	2.50	5.30	8.29	4.60	8.68	2.20	7.41	3.72	8.93	9.60	6.65	9.00	4.31	7.32	1.52	2.59	6.44	3.58	2.83	2.59	8.61	3.70
28	I3_SR1	SilentIntronRegion	0	21.71	9.78	2.86	1.75	3.58	16.60	5.66	3.37	7.11	19.56	12.92	18.60	5.93	14.95	3.81	15.87	16.76	15.63	15.98	6.53	14.97	4.40	7.28	6.82	4.71	3.07	5.36	17.10	8.65
29	I3_AR1	ActiveIntronRegion	0	6.15	6.13	2.06	3.26	3.88	5.63	1.71	1.61	5.40	6.01	4.88	3.75	1.72	3.94	5.20	6.06	8.00	5.11	9.17	3.76	4.28	0.27	1.37	8.28	2.30	1.19	2.09	6.60	2.43
30	I3_SR2	SilentIntronRegion	0	10.31	3.23	2.17	0.00	6.02	3.27	1.32	0.59	2.74	6.84	0.85	5.50	1.31	8.27	3.72	6.30	9.06	2.56	3.99	3.14	2.20	1.67	1.07	4.77	3.83	0.59	0.42	12.70	2.79
31	I3_AR2	ActiveIntronRegion	0	9.44	5.40	2.96	4.23	3.99	8.18	2.38	2.72	5.64	8.01	4.06	9.81	2.02	7.44	3.67	9.16	9.80	7.07	8.74	4.45	8.33	1.17	2.43	7.49	4.00	3.14	2.73	8.18	3.47
32	I3_SR3	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.90	0.00	0.00	0.99	0.00	0.00	0.00	1.42	0.00	1.54	10.18	0.00	1.14	0.00	1.44	3.43	0.00	1.25	0.00	0.00	0.00
33	I3_SR4	SilentIntronRegion	0	6.15	1.39	1.08	1.54	5.96	3.06	1.59	2.38	4.14	4.45	1.96	3.54	1.02	5.10	3.43	6.76	6.64	2.12	6.19	3.51	3.07	1.42	1.17	3.24	2.77	3.16	1.45	5.85	2.45
34	Ix	Intron	0	5.62	3.06	1.69	1.45	0.98	1.11	0.00	4.45	5.19	3.20	1.44	5.72	1.30	3.56	0.00	5.22	4.21	1.62	3.22	0.00	2.59	0.73	1.82	3.90	2.59	1.90	1.11	6.90	1.49
35	Ix_AR1	ActiveIntronRegion	0	5.66	3.09	1.69	1.46	0.99	1.12	0.00	4.49	5.23	3.23	1.45	5.77	1.31	3.58	0.00	5.26	4.25	1.63	3.25	0.00	2.61	0.73	1.84	3.93	2.61	1.92	1.12	6.96	1.50
36	ER4a	ExonRegion	0	1.37	0.00	1.70	0.00	4.92	0.00	1.07	0.02	0.00	0.02	0.46	1.01	0.02	1.29	0.00	5.34	4.28	2.47	1.96	1.52	0.53	0.04	0.02	0.00	0.02	0.00	0.02	0.02	0.02
37	E4a_E5a	KnownJunction	0	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E5_Aa	NovelBoundary	0	8.26	8.63	0.00	0.00	25.05	10.28	5.03	2.14	14.40	2.04	4.49	15.12	0.00	7.44	0.00	3.75	8.62	4.88	0.00	7.86	3.85	1.90	7.34	0.00	1.89	2.10	0.00	0.00	1.29
39	ER5a	ExonRegion	0	0.00	0.00	1.02	0.00	0.00	0.00	0.89	0.00	0.00	0.00	0.52	0.54	0.00	0.30	0.00	0.79	0.66	0.00	0.00	0.00	0.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E5_Da	NovelBoundary	0	5.72	0.00	4.51	0.00	6.63	0.00	5.03	2.54	4.45	11.06	4.56	9.01	1.24	3.50	0.00	17.75	12.31	0.00	0.00	6.70	0.00	2.48	0.00	10.71	6.29	3.52	0.00	4.40	1.55
41	Ix	Intron	0	1.85	0.88	0.62	1.54	2.29	1.13	0.71	0.47	1.62	1.86	0.54	1.50	0.58	1.25	2.26	0.76	0.93	1.48	1.87	0.49	3.54	0.11	0.07	1.14	0.50	0.61	0.43	1.37	0.44
42	Ix_AR1	ActiveIntronRegion	0	1.62	1.37	0.61	2.72	1.19	1.01	0.58	0.34	2.72	1.97	0.44	1.98	0.40	1.34	2.57	1.06	0.79	1.29	4.04	0.51	3.93	0.00	0.00	1.04	0.26	0.38	1.01	1.10	0.59
43	Ix_SR2	SilentIntronRegion	0	2.50	1.71	0.53	1.51	4.10	0.58	2.05	0.39	1.81	2.68	0.63	2.76	0.34	1.40	4.26	0.00	1.30	2.03	1.34	0.58	4.20	0.19	0.00	1.82	0.75	0.17	0.00	1.89	1.10
44	ER6a	ExonRegion	0	0.11	0.02	0.03	0.04	0.00	0.02	0.68	0.04	0.00	0.06	0.07	0.04	0.09	0.08	0.00	0.00	0.06	0.03	0.00	0.03	0.01	0.08	0.07	0.02	0.04	0.05	0.01	0.02	0.06
45	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00