Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TRIM3	Gene	0	23.66	14.87	14.67	11.34	5.22	14.09	5.47	8.42	10.41	13.12	5.00	23.61	13.23	22.37	7.13	18.02	57.09	24.65	6.34	7.85	9.13	17.35	14.77	27.81	11.72	11.79	5.28	15.24	15.26
2	379914	Transcript	0	4.24	2.02	1.00	0.94	0.68	2.14	0.60	0.01	1.08	1.36	1.29	3.06	0.55	2.01	3.37	3.74	12.02	2.93	2.00	0.91	0.73	0.00	0.00	3.48	0.75	0.66	0.00	0.67	0.89
3	336043	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	345851	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	359518	Transcript	0	0.22	0.33	0.17	0.00	0.00	0.28	0.21	0.00	0.00	0.74	0.00	0.25	0.98	0.54	0.48	1.86	1.21	2.47	0.33	0.00	0.00	0.38	0.00	0.00	0.00	0.31	0.00	0.91	0.00
6	IG33_AR2	ActiveIntergenicRegion	0	1.25	0.94	1.34	0.52	0.71	3.01	1.18	2.15	3.11	3.27	2.52	7.06	3.26	3.63	2.40	4.16	3.70	3.09	3.26	0.40	2.29	1.71	4.75	3.77	3.55	1.61	3.47	1.55	2.25
7	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1b	ExonRegion	0	4.87	1.71	6.15	23.85	2.71	3.87	1.12	0.51	1.28	1.60	1.65	4.79	3.51	4.40	3.04	8.20	8.42	10.23	1.77	0.00	0.08	2.22	3.42	3.88	0.47	4.58	0.51	6.78	4.53
9	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E1a_E3a	KnownJunction	0	8.08	9.40	1.37	0.00	0.00	1.73	0.00	0.00	0.00	0.00	0.00	9.58	2.96	7.07	0.00	0.00	11.43	0.00	0.00	0.00	1.60	2.48	1.97	10.05	1.52	10.99	0.00	0.00	11.52
11	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.13	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
12	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER2a	ExonRegion	0	0.66	1.00	0.52	0.00	0.00	0.85	0.62	0.00	0.00	2.21	0.00	0.76	0.36	0.81	1.43	1.83	1.45	2.80	0.99	0.00	0.00	1.14	0.00	0.00	0.01	0.92	0.00	0.92	0.00
14	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.58	0.82	0.00	3.75	2.18	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.80	0.00
15	ER3a	ExonRegion	0	20.27	12.90	3.14	8.44	3.20	9.23	3.77	10.41	4.11	10.63	5.40	14.11	13.61	22.20	3.07	17.31	45.09	29.96	7.14	6.47	3.33	7.39	10.16	27.30	9.15	12.94	3.10	17.93	13.25
16	E3a_E4a	KnownJunction	1	54.86	18.13	7.03	7.98	14.30	15.96	2.23	19.71	6.12	15.26	19.49	19.31	24.68	30.22	0.00	25.47	57.89	41.61	8.09	11.83	0.00	16.34	4.53	57.90	15.42	33.34	6.36	38.46	19.11
17	E4_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.45	0.00	16.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E4a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER4a	ExonRegion	0	44.55	22.99	6.13	4.44	31.49	10.90	6.91	21.37	4.82	16.04	9.05	17.93	16.75	30.35	5.60	24.76	46.40	41.33	3.72	6.52	0.31	14.87	4.84	48.25	10.67	22.68	9.94	20.38	16.01
20	ER4b	ExonRegion	0	20.34	15.27	11.53	25.59	7.59	10.56	7.39	12.08	3.03	10.74	4.38	15.73	13.26	27.97	4.06	13.34	47.94	31.10	4.79	9.42	4.18	15.28	10.99	33.93	7.85	11.32	2.84	12.65	12.69
21	E4b_E5a	KnownJunction	0	24.36	20.55	4.61	10.78	0.00	5.83	2.92	11.60	2.92	15.30	5.92	11.20	6.62	17.68	0.00	11.93	25.12	41.61	0.00	0.00	3.73	25.04	12.80	18.72	14.40	11.11	4.97	4.27	6.77
22	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	2.48	0.00	0.00	1.78	0.00	0.00	0.00	0.00
23	ER5a	ExonRegion	0	27.72	7.12	12.86	2.54	4.01	6.47	8.65	4.73	3.65	15.80	1.83	14.02	8.98	17.42	4.20	7.31	35.26	29.07	4.09	6.87	7.05	19.45	14.14	18.85	11.12	7.57	4.45	20.58	9.06
24	E5_Da	KnownBoundary	0	22.06	8.43	9.47	0.00	26.23	9.17	5.84	0.00	1.46	5.75	0.00	13.49	5.38	15.82	0.00	23.94	46.44	19.26	8.09	7.53	11.63	22.95	9.01	19.74	5.42	8.37	4.52	12.94	12.61
25	E5a_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER5b	ExonRegion	0	23.52	12.66	11.52	10.11	25.79	10.96	5.99	0.32	4.16	10.19	1.16	12.30	4.81	25.00	5.77	18.24	52.35	27.69	5.32	10.42	8.81	18.13	13.08	15.63	16.06	17.84	1.83	9.01	11.65
27	E5_Ab	KnownBoundary	0	26.90	12.22	12.51	31.28	19.45	13.01	2.86	0.00	4.02	10.83	3.04	13.13	4.11	26.12	0.00	7.65	39.66	36.99	0.00	8.19	7.50	11.18	9.80	13.10	16.03	15.58	0.00	3.73	9.05
28	ER5c	ExonRegion	0	22.93	8.85	6.42	17.49	9.31	11.77	2.80	1.08	2.22	7.06	2.12	18.04	7.60	21.89	0.37	16.56	44.10	19.10	1.08	3.54	6.51	12.27	9.00	10.94	8.70	11.21	0.32	4.57	10.04
29	E5b_E6a	KnownJunction	0	26.96	12.60	4.73	19.84	6.63	4.80	0.00	2.54	2.56	5.03	4.37	23.79	8.06	24.93	0.00	17.44	42.36	27.74	0.00	3.64	3.65	29.27	9.11	13.76	8.83	9.44	0.00	9.62	11.09
30	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER6a	ExonRegion	0	32.18	16.50	10.15	4.00	5.79	8.62	3.23	13.02	5.04	10.26	7.10	25.51	9.06	26.62	4.17	14.24	54.21	33.61	6.05	7.65	10.81	22.64	17.56	20.44	9.09	7.64	1.09	14.99	13.58
32	E6a_E6c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER6b	ExonRegion	0	31.48	16.22	22.02	7.31	4.98	11.34	5.67	12.66	12.01	8.84	6.55	31.62	4.87	24.66	5.60	25.47	57.91	42.47	5.09	3.69	7.13	15.77	22.04	21.65	14.83	6.38	0.00	27.20	11.74
34	ER6c	ExonRegion	0	38.82	13.78	24.42	9.38	9.42	17.33	7.14	3.32	9.18	15.85	3.57	27.08	11.78	31.23	1.46	17.94	62.93	22.60	5.21	16.62	8.22	18.42	18.20	16.51	14.88	17.63	4.10	31.50	13.01
35	E6_Ac	KnownBoundary	0	41.82	19.58	21.23	20.49	17.83	16.54	8.18	5.77	7.80	8.71	3.95	20.72	20.54	31.91	0.00	12.70	69.71	14.51	8.09	30.19	13.56	22.61	17.78	19.62	9.36	16.09	6.66	31.05	15.22
36	ER6d	ExonRegion	0	39.62	22.10	19.86	10.86	10.72	14.37	8.73	5.36	6.03	13.08	6.38	25.11	15.67	31.39	4.58	24.16	61.32	11.91	7.13	21.55	14.57	31.25	23.78	28.03	8.97	22.24	2.78	19.51	14.03
37	E6_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	3.67	3.94	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E6b_E7a	KnownJunction	0	32.68	13.09	18.41	18.55	0.00	20.60	11.10	8.26	6.24	15.34	7.24	27.41	7.93	26.30	9.97	21.27	56.90	28.13	8.09	19.85	15.12	32.09	22.16	35.35	13.94	24.46	0.00	16.58	13.90
39	E7_Aa	NovelBoundary	0	2.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	1.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.18	1.80	0.00	0.00	0.00
40	ER7a	ExonRegion	0	24.97	8.89	17.34	9.61	5.89	10.64	4.06	7.25	7.14	9.75	2.64	23.40	12.46	18.67	4.54	15.52	51.19	27.05	6.87	7.82	9.25	15.19	16.04	17.69	7.40	10.38	2.99	14.55	13.13
41	E7_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00
42	E7a_E8a	KnownJunction	0	29.67	8.53	15.65	32.35	5.60	12.01	5.26	4.73	9.11	10.39	4.40	24.58	10.48	19.70	0.00	20.12	67.64	42.77	16.18	4.13	8.82	14.00	24.23	17.47	7.12	5.97	2.48	12.45	5.51
43	ER8a	ExonRegion	0	22.57	16.36	23.83	15.12	2.06	29.44	8.63	13.65	13.26	21.84	9.74	30.39	19.57	28.47	10.61	26.18	69.62	39.05	8.66	17.86	17.95	18.91	21.40	21.35	21.91	14.54	5.14	26.52	12.44
44	E8_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.57	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	2.41	0.00	0.00	4.38	0.00	6.87	0.00
45	E8a_E9a	KnownJunction	0	29.14	32.09	23.92	0.00	0.00	34.76	10.58	13.69	20.37	16.58	8.10	24.67	24.58	35.47	0.00	34.65	45.81	42.90	24.05	4.13	26.83	13.52	22.41	46.60	23.15	15.45	4.72	42.28	14.82
46	E8a_E10a	NovelJunction	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E9_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.39	0.00	0.00	0.00	0.00	7.36	0.00	0.00	8.27	0.00	0.00	0.00	2.69	0.00	0.00	0.00	0.00	0.00
48	ER9a	ExonRegion	0	31.82	18.79	21.78	10.14	2.97	27.80	11.33	10.13	11.94	18.81	8.06	32.65	24.24	28.38	10.30	28.35	70.35	31.71	11.13	9.44	19.43	25.67	23.87	40.18	25.92	13.95	11.16	19.02	15.27
49	E9a_E10a	KnownJunction	0	31.26	28.02	23.89	8.20	0.00	53.37	21.28	10.90	14.71	33.75	3.83	35.69	24.39	27.81	36.48	25.63	83.46	23.12	16.18	2.98	34.21	26.69	11.82	40.08	17.12	8.07	26.04	34.06	15.45
50	ER10a	ExonRegion	0	29.72	19.46	25.73	28.95	1.56	27.35	10.82	9.18	12.66	19.65	7.79	30.26	18.36	31.34	9.35	27.82	72.61	29.65	7.15	7.58	15.28	28.87	23.22	44.52	19.29	13.14	9.27	16.14	21.69
51	E10_Da	NovelBoundary	0	5.43	0.00	0.00	0.00	0.00	1.96	2.69	0.00	0.00	1.92	0.00	1.42	0.00	0.00	0.00	0.00	4.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.63	0.00	0.00	3.77	0.00
52	E10a_E11a	KnownJunction	0	22.06	4.36	18.36	8.41	0.00	29.08	4.69	6.72	11.08	18.81	11.80	28.19	14.01	30.35	16.74	28.08	80.90	18.49	16.18	0.00	14.60	6.56	10.98	29.13	7.92	15.41	0.00	7.55	33.67
53	I10	Intron	0	6.07	0.00	0.00	0.00	0.92	1.30	0.38	0.00	1.80	1.91	1.12	2.79	0.37	2.99	0.87	4.22	7.90	2.61	0.00	1.04	0.54	0.34	0.68	2.84	1.62	1.19	0.00	0.31	1.89
54	I10_AR1	ActiveIntronRegion	0	6.12	0.00	0.00	0.00	0.93	1.31	0.38	0.00	1.82	1.92	1.13	2.82	0.37	3.01	0.88	4.25	7.95	2.63	0.00	1.05	0.54	0.34	0.69	2.87	1.63	1.20	0.00	0.31	1.91
55	ER11a	ExonRegion	0	28.02	19.71	13.70	10.30	8.49	24.41	11.24	12.11	25.98	22.35	9.39	41.88	21.99	37.79	10.02	30.19	86.08	32.79	6.44	12.83	20.03	27.60	20.99	49.11	27.36	28.20	8.82	18.67	31.59
56	E11_Da	KnownBoundary	0	18.46	0.00	2.14	0.00	0.00	9.21	2.52	1.84	11.39	6.79	4.84	6.78	3.12	5.96	25.31	6.43	47.38	4.62	0.00	3.31	2.05	0.00	0.00	4.90	8.79	0.00	0.00	4.58	0.00
57	E11a_E12a	KnownJunction	0	29.73	27.24	17.02	0.00	20.19	21.10	5.78	20.75	30.06	17.74	9.27	42.74	33.05	42.39	0.00	31.90	53.80	55.74	0.00	18.69	11.71	53.97	30.78	70.64	23.87	11.93	26.84	24.62	33.54
58	ER11b	ExonRegion	0	12.73	6.06	3.01	2.82	2.03	6.42	1.79	0.04	3.24	4.07	3.86	9.17	1.66	6.03	10.11	11.21	36.07	8.80	6.00	2.73	2.19	0.01	0.00	10.43	2.25	1.99	0.00	2.01	2.68
59	E11_Db	NovelBoundary	0	7.73	8.73	1.22	0.00	0.00	10.17	5.26	0.00	7.10	3.56	2.94	9.49	0.00	10.92	7.57	7.19	30.27	0.00	16.18	0.00	2.05	0.00	0.00	25.72	5.61	0.00	0.00	2.16	6.40
60	I11	Intron	0	15.46	4.98	0.86	0.00	0.00	2.12	1.04	3.79	4.34	4.46	0.00	3.82	2.01	7.93	0.00	6.39	23.07	8.93	4.94	3.46	2.20	0.00	0.00	13.30	4.42	2.43	0.00	5.04	6.55
61	I11_AR1	ActiveIntronRegion	0	15.62	5.03	0.87	0.00	0.00	2.15	1.05	3.83	4.38	4.51	0.00	3.86	2.03	8.01	0.00	6.46	23.30	9.02	4.99	3.50	2.23	0.00	0.00	13.43	4.46	2.45	0.00	5.09	6.61
62	E12_Aa	NovelBoundary	0	18.23	0.00	1.49	21.57	0.00	11.13	0.00	2.54	0.00	7.63	0.00	10.33	1.62	10.30	8.17	18.59	33.70	0.00	8.09	10.92	0.00	0.00	4.24	5.38	1.74	0.00	0.00	1.84	0.00
63	ER12a	ExonRegion	0	31.09	30.19	23.92	14.11	13.28	24.08	9.81	17.44	30.83	25.66	11.41	53.98	20.56	41.19	9.53	34.71	97.71	28.86	9.12	9.61	17.54	31.27	24.76	66.56	23.59	22.19	20.61	24.17	31.16
64	E12_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	2.04	0.00	3.60	5.72	0.00	0.00	3.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	E12a_E13a	KnownJunction	0	38.81	41.01	23.12	28.26	0.00	20.41	5.32	12.99	41.69	30.40	4.40	49.82	20.86	38.46	8.37	21.88	114.59	18.49	8.09	17.37	21.22	23.19	19.50	47.85	20.99	26.13	25.54	27.68	23.60
66	E13_Aa	NovelBoundary	0	2.89	0.00	0.00	0.00	6.78	0.00	0.00	0.00	0.00	1.64	0.00	1.48	1.62	3.35	0.00	6.27	8.69	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
67	ER13a	ExonRegion	0	30.66	28.94	19.69	8.75	4.42	19.59	5.63	13.17	23.17	21.22	6.89	35.14	19.65	30.86	13.64	22.38	93.80	25.72	7.54	10.69	11.83	29.07	20.62	47.60	18.00	16.67	9.64	21.61	27.90
68	ER13b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	IG32_AR4	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.63	0.00
70	IG32_SR3	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.67	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.57	0.00	0.00	0.00