Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP11-539I5.2	Gene	0	13.03	20.80	10.38	2.84	0.32	7.63	1.07	171.38	3.08	13.73	20.44	0.24	16.17	120.22	241.40	75.98	37.87	6.49	68.17	188.34	47.96	78.96	111.21	21.74	112.55	279.30	89.19	83.78	45.35
2	434227	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.45	2.04	0.00	0.00	1.06	0.00	0.29	5.72	4.33	5.21	0.33	0.94	0.00	7.69	3.61	2.84	6.82	1.91	1.27	35.47	5.28	4.48	0.44
3	453491	Transcript	0	20.60	20.28	8.51	1.33	0.10	9.36	1.89	214.53	5.24	11.45	18.47	0.43	22.24	124.09	314.05	94.47	36.18	7.07	78.73	193.97	51.06	104.37	122.91	21.13	138.29	362.85	64.60	106.79	45.52
4	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.89	4.08	0.00	0.00	0.89	0.00	0.58	8.12	8.67	6.60	0.66	1.87	0.00	11.49	3.13	0.72	13.63	3.82	2.54	48.20	10.56	6.66	0.89
5	E1_Da	NovelBoundary	0	2.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	9.97	0.00	1.22	0.00	0.00	0.00	0.00	0.00	5.02	3.05	1.48	10.39	2.39	2.02	0.00
6	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.47	0.00	1.88	0.00	0.00	0.00	0.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.14	0.00	0.00	1.93	30.73	20.62	0.00	0.00
7	E1a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.23	0.00	0.00	3.32	0.00	3.82	0.00	0.00	0.00	3.89	4.09	4.96	0.00	0.00	0.00	22.74	0.00	2.29	0.00
8	Ix	Intron	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.37	0.00	0.00	0.00	0.82	1.42	0.00	0.39	0.50	0.83	1.74	0.00	0.00	1.87	0.00	0.00	2.44	0.00	1.69	0.52
9	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.38	0.00	0.00	0.00	0.83	1.44	0.00	0.39	0.50	0.84	1.76	0.00	0.00	1.89	0.00	0.00	2.47	0.00	1.71	0.52
10	E2_Aa	NovelBoundary	0	22.71	8.24	9.07	0.00	6.34	7.29	0.00	230.96	12.55	6.87	10.76	0.00	13.31	98.60	543.35	176.64	40.02	13.87	121.39	171.93	42.76	144.98	122.73	11.96	117.90	464.80	75.64	98.00	28.09
11	ER2a	ExonRegion	0	8.56	14.03	8.45	5.38	0.00	4.38	0.76	123.50	1.61	5.84	7.48	0.69	10.90	35.50	158.13	31.82	20.83	2.39	44.93	78.10	18.75	57.24	61.81	8.27	45.50	172.84	19.11	44.08	34.95
12	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.54	1.37	1.80	1.52	1.39	0.00	5.45	0.00	9.72	2.68	0.00	8.09	16.29	6.14	0.00	12.90	2.99	1.78	25.58	0.00	8.54	3.60
13	E2a_E3a	KnownJunction	0	21.77	12.12	2.49	0.00	0.00	9.32	0.00	67.83	4.11	4.07	13.95	0.00	3.82	47.37	82.52	47.20	8.73	4.62	24.28	66.41	12.76	99.37	29.89	12.62	50.50	113.16	15.36	32.13	5.15
14	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	3.22	0.00	52.35	0.00	1.52	1.58	0.00	4.14	38.71	121.39	10.33	8.78	0.00	16.18	99.32	2.05	31.21	7.39	5.20	23.45	17.77	0.00	6.78	23.74
15	I2	Intron	0	1.08	1.27	0.25	0.09	0.04	0.65	0.02	2.37	0.67	1.21	0.67	0.02	0.62	4.19	12.52	4.92	1.62	0.31	5.43	5.00	3.85	1.05	1.44	1.17	2.41	5.32	2.73	5.02	1.68
16	I2_AR1	ActiveIntronRegion	0	3.08	0.51	0.27	0.00	0.00	1.19	0.00	1.46	0.72	2.33	0.95	0.00	0.43	3.59	5.16	5.38	0.00	0.62	3.06	3.59	4.10	1.44	1.45	0.73	0.69	11.55	2.64	2.87	0.53
17	I2_SR1	SilentIntronRegion	0	1.98	1.99	0.37	0.13	0.00	0.99	0.08	4.32	1.69	2.09	1.02	0.00	1.50	7.31	27.73	5.63	2.98	0.40	9.30	6.41	4.56	2.17	2.49	3.38	4.19	11.75	4.96	8.44	4.29
18	I2_AR2	ActiveIntronRegion	0	4.29	0.00	0.00	0.00	0.00	1.37	0.00	4.30	1.00	2.89	1.19	0.00	0.00	7.86	22.40	2.25	2.00	0.00	0.00	0.00	2.85	1.80	5.42	2.15	5.72	7.33	0.00	4.89	6.26
19	I2_AR3	ActiveIntronRegion	0	0.76	0.82	0.78	0.00	0.00	0.78	0.00	2.94	0.99	1.44	0.87	0.00	1.75	5.68	35.64	7.28	1.98	0.49	6.85	5.43	2.55	2.01	2.72	1.56	4.55	7.01	4.02	5.11	3.94
20	I2_SR2	SilentIntronRegion	0	0.62	1.38	0.27	0.17	0.00	0.58	0.00	1.25	0.48	0.47	0.53	0.05	0.29	3.19	8.46	4.40	1.13	0.22	5.26	3.88	3.65	0.71	0.95	0.39	1.96	2.43	2.65	2.94	0.61
21	I2_AR4	ActiveIntronRegion	0	1.27	0.31	0.17	0.00	0.00	0.71	0.00	3.06	0.23	1.95	0.25	0.00	0.54	3.17	5.16	1.40	2.10	0.40	1.33	6.79	3.24	0.56	1.15	1.63	1.03	4.90	1.14	7.43	0.62
22	I2_AR5	ActiveIntronRegion	0	0.83	0.18	0.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.96	0.62	7.24	2.81	0.00	0.00	5.54	7.05	0.50	9.90	1.97	0.04	2.92	0.00	9.51	2.68
23	I2_SR3	SilentIntronRegion	0	1.25	1.19	0.07	0.00	0.00	0.80	0.00	3.23	0.00	1.61	1.26	0.00	0.28	3.25	3.14	5.72	1.67	0.44	4.74	5.54	4.75	0.55	0.95	0.80	1.97	3.22	1.36	3.95	0.57
24	I2_AR6	ActiveIntronRegion	0	0.15	0.67	0.00	0.00	0.00	0.38	0.00	0.49	0.00	0.20	0.08	0.00	0.13	2.06	2.88	3.59	1.10	0.13	2.89	4.42	2.66	0.13	0.76	0.15	1.10	2.18	0.74	3.05	0.80
25	I2_SR4	SilentIntronRegion	0	0.84	0.85	0.00	0.00	0.35	0.26	0.00	2.10	0.30	1.63	0.17	0.00	0.16	2.98	4.83	4.80	0.77	0.27	3.07	5.55	4.04	0.58	1.09	0.15	1.67	3.89	0.99	5.16	1.32
26	I2_AR7	ActiveIntronRegion	0	2.14	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	1.29	0.00	0.00	2.60	4.11	0.00	5.33	0.00	0.00	0.00	5.77	2.33	0.00	0.00	0.00	0.90	7.86	0.00	0.86	0.85
27	I2_AR8	ActiveIntronRegion	0	2.14	0.00	0.00	0.00	0.00	1.37	0.00	1.64	0.00	0.00	0.00	0.00	2.60	3.93	0.00	2.53	0.00	2.73	2.01	2.81	4.28	0.00	1.81	0.00	2.86	7.86	0.00	0.36	0.00
28	I2_AR9	ActiveIntronRegion	0	2.14	0.00	0.00	0.00	0.00	1.37	0.00	1.84	0.00	0.00	0.00	0.00	1.60	4.88	0.00	3.11	0.00	2.73	4.53	4.54	5.38	0.00	1.81	0.00	2.86	3.75	0.00	4.14	0.00
29	I2_AR10	ActiveIntronRegion	0	0.67	0.00	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	4.37	0.00	3.64	0.00	2.73	4.53	2.81	7.13	0.00	1.81	0.00	2.86	0.00	0.00	5.30	0.00
30	I2_AR11	ActiveIntronRegion	0	0.48	0.73	0.38	0.00	0.00	0.00	0.00	2.74	0.13	0.65	1.21	0.00	0.00	3.31	3.51	6.82	1.68	0.00	1.80	3.76	2.78	0.61	0.85	0.24	1.35	1.95	2.47	7.73	0.00
31	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.08	0.00	0.00	0.00	0.00	0.00	3.43	9.57	11.47	2.14	9.25	0.00	7.94	1.64	2.48	0.00	2.87	0.00	13.86	0.00	10.78	0.00
32	ER3a	ExonRegion	0	25.40	19.55	7.72	0.00	0.00	15.24	0.00	228.23	9.21	7.19	27.27	0.47	13.42	105.08	150.66	112.15	21.84	2.87	47.90	163.16	42.77	161.26	78.24	30.40	172.40	364.15	54.06	102.64	18.10
33	E3_Da	NovelBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	2.34	0.00	0.00	2.91	0.00	0.00	8.00	0.00	3.44	1.04	0.00	0.00	4.05	0.00	0.00	0.00	0.00	3.18	0.00	0.00	4.04	0.00
34	E3a_E4a	KnownJunction	0	25.19	22.30	7.62	0.00	0.00	10.32	0.00	267.54	7.13	12.26	14.17	1.63	18.47	134.96	268.88	131.12	34.26	0.00	89.02	155.72	66.42	73.41	125.49	32.24	250.42	540.98	41.55	116.51	23.44
35	I3	Intron	0	0.78	0.00	0.00	0.00	0.00	0.00	0.00	5.99	0.00	0.52	0.00	0.00	0.00	3.11	6.67	3.98	0.54	1.39	3.47	1.71	1.55	1.30	2.62	1.56	3.10	0.57	1.99	6.49	0.49
36	I3_SR1	SilentIntronRegion	0	0.79	0.00	0.00	0.00	0.00	0.00	0.00	6.08	0.00	0.53	0.00	0.00	0.00	3.15	6.77	4.02	0.55	1.41	3.52	1.74	1.57	1.32	2.65	1.58	3.15	0.58	2.02	6.57	0.49
37	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	2.54	1.55	0.00	0.00	0.00	0.00	4.52	0.00	6.88	2.57	0.00	0.00	2.98	0.00	0.00	0.00	0.00	3.26	12.27	0.00	8.72	0.00
38	ER4a	ExonRegion	0	18.05	36.72	9.28	0.00	0.00	13.84	0.00	335.57	4.92	26.15	17.35	1.24	23.41	190.38	413.08	155.33	48.91	13.40	112.34	275.13	78.48	106.08	198.51	29.73	216.24	654.29	90.27	162.03	56.46
39	E4_Da	KnownBoundary	0	23.48	35.87	11.96	0.00	0.00	13.08	0.00	447.84	7.31	32.60	17.59	1.17	30.95	252.70	689.85	160.26	77.59	13.87	169.27	425.90	108.94	129.47	244.08	22.13	197.61	664.95	130.31	191.23	107.26
40	ER4b	ExonRegion	0	22.63	36.67	10.15	0.00	0.00	10.74	3.80	381.06	6.77	20.04	18.38	0.23	44.29	220.22	697.86	152.31	61.90	12.69	163.25	363.36	105.82	134.07	253.03	20.36	198.74	633.66	103.08	186.39	97.98
41	E4_Db	NovelBoundary	0	5.84	4.85	0.00	0.00	0.00	3.26	0.00	18.71	0.00	2.04	0.00	0.00	0.00	20.74	54.81	32.74	25.66	4.62	8.09	31.43	4.81	4.67	4.48	0.00	16.21	32.23	2.34	29.52	6.77
42	E4b_E5a	KnownJunction	0	25.66	11.15	8.27	0.00	0.00	6.71	7.44	246.24	4.93	11.02	17.34	0.00	45.57	157.38	555.50	97.38	51.66	18.49	97.11	274.56	47.97	117.12	174.20	14.06	111.65	425.54	76.14	168.09	79.20
43	I4	Intron	0	3.88	3.81	0.89	1.27	0.00	2.49	0.21	18.55	0.36	3.84	1.86	0.07	0.32	21.18	23.82	25.31	14.72	0.82	11.10	27.02	5.67	2.43	2.50	4.04	12.17	18.84	4.61	10.52	2.68
44	I4_SR1	SilentIntronRegion	0	3.88	3.81	0.89	1.27	0.00	2.49	0.21	18.57	0.36	3.85	1.86	0.07	0.32	21.21	23.85	25.34	14.74	0.82	11.12	27.05	5.67	2.43	2.50	4.05	12.18	18.87	4.62	10.54	2.68
45	E5_Aa	NovelBoundary	0	8.61	0.00	2.82	10.14	0.00	0.00	0.00	22.10	0.00	1.48	6.33	0.00	0.00	38.46	33.88	46.66	16.41	0.00	24.05	40.94	7.34	0.00	7.09	3.05	16.06	15.79	17.64	15.95	2.91
46	ER5a	ExonRegion	0	14.97	26.13	14.88	3.92	0.67	8.83	1.22	187.29	2.92	19.67	30.71	0.00	19.22	168.11	284.78	89.27	54.03	8.44	84.63	256.47	62.92	88.14	137.73	29.98	138.85	289.62	142.89	97.72	59.83
47	IG50_SR5	SilentIntergenicRegion	0	0.00	0.00	2.62	0.00	0.00	2.90	0.00	9.41	0.00	2.57	0.40	0.00	0.00	15.92	20.54	37.40	4.45	2.12	5.03	40.29	8.40	10.22	19.49	1.91	11.59	19.73	15.06	9.42	5.22
48	IG50_AR4	ActiveIntergenicRegion	0	7.05	20.89	8.42	0.98	0.67	9.54	0.55	76.25	0.54	21.51	30.50	0.17	8.26	101.26	85.95	65.87	27.11	8.22	69.08	158.32	54.16	38.06	93.96	20.89	106.13	192.80	129.45	83.35	29.22
49	IG50_AR3	ActiveIntergenicRegion	0	8.81	37.29	15.53	3.45	0.94	20.37	1.33	91.98	4.96	34.95	30.39	0.36	13.31	177.10	109.85	110.89	60.48	10.68	106.02	263.35	110.00	51.45	148.97	41.08	180.40	271.79	171.91	121.65	54.71
50	IG50_SR3	SilentIntergenicRegion	0	3.70	28.85	10.67	0.00	0.00	16.49	1.45	54.66	7.26	19.55	34.10	0.16	10.82	108.59	99.59	94.87	43.12	5.01	73.71	168.19	79.63	29.56	94.28	37.23	108.68	169.24	156.51	88.46	41.93
51	IG50_AR2	ActiveIntergenicRegion	0	7.20	33.89	10.79	0.98	0.89	15.91	1.98	126.59	19.80	22.63	30.77	0.59	23.74	153.25	228.55	112.41	66.68	8.61	69.65	187.63	82.60	58.00	119.74	57.99	137.07	282.48	164.37	153.58	79.18
52	IG50_SR2	SilentIntergenicRegion	0	2.38	4.89	3.02	0.26	0.00	3.79	0.76	44.57	1.97	4.35	5.81	0.08	2.91	41.50	66.74	33.47	19.09	1.37	22.18	56.57	14.05	7.77	21.30	11.15	39.10	88.37	43.32	30.49	17.35
53	IG50_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.82	0.00	0.59	0.17	0.30	0.36	0.00	0.00	0.95	1.68	1.16	0.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	1.65	0.00	2.53	0.40