Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C10orf28	Gene	0	73.91	89.53	55.14	43.00	35.18	93.72	55.65	30.77	53.65	91.47	109.95	86.42	56.38	132.37	66.53	102.25	57.87	77.48	120.33	90.27	85.27	71.87	46.02	74.91	51.18	52.72	52.52	32.19	59.26
2	370586	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	16.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	298999	Transcript	0	2.14	0.00	1.12	9.75	0.00	2.75	1.34	0.00	2.62	3.37	3.17	4.12	0.00	1.51	7.47	0.84	2.00	6.37	12.07	1.87	1.43	0.00	0.00	2.15	0.48	2.62	0.00	0.00	0.00
4	370584	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	314594	Transcript	0	2.84	2.43	1.24	0.00	0.00	0.98	0.00	2.21	6.18	3.79	9.86	2.30	1.06	4.58	0.00	0.92	0.51	1.93	4.21	2.04	0.61	4.99	1.76	2.76	2.94	3.63	0.00	0.04	0.87
6	ER1a	ExonRegion	0	20.90	4.38	8.88	13.81	7.33	10.81	3.98	2.97	2.06	13.64	21.49	10.14	2.99	15.24	8.71	25.66	14.97	39.95	43.62	4.53	20.64	14.32	18.99	4.42	7.38	19.51	8.60	5.48	8.84
7	E1_Da	NovelBoundary	0	2.95	4.85	3.04	0.00	0.00	0.00	0.00	0.00	2.83	0.00	4.84	0.00	0.00	0.86	0.00	2.98	0.86	9.76	0.00	0.00	8.18	0.00	3.89	0.00	3.64	7.30	0.00	0.00	0.00
8	E1a_E2a	KnownJunction	0	53.50	9.70	19.03	32.35	21.22	29.58	11.04	9.06	4.66	37.59	49.00	19.01	7.01	32.10	19.93	59.21	30.34	66.27	40.46	8.27	46.57	33.89	38.22	13.16	16.40	40.60	23.66	13.25	22.48
9	E1a_E3a	NovelJunction	0	37.46	43.05	44.00	74.85	42.44	45.54	17.45	14.73	8.25	64.35	43.53	54.97	16.81	56.28	9.97	129.05	50.51	84.76	72.83	61.61	31.93	40.16	25.46	25.48	9.55	34.03	14.26	28.17	12.68
10	E1a_E4b	NovelJunction	0	5.60	23.56	8.30	37.31	0.00	10.17	2.40	0.00	0.00	7.51	15.37	11.69	0.00	30.89	0.00	24.94	9.30	13.87	0.00	15.55	1.76	7.24	2.51	2.69	1.93	7.81	0.00	3.95	13.67
11	E1a_E5a	NovelJunction	0	3.01	0.00	0.00	0.00	0.00	0.00	2.92	2.04	0.00	1.88	0.00	4.79	0.00	4.50	0.00	3.82	1.15	0.00	0.00	0.00	2.05	2.48	0.00	0.00	0.00	5.15	0.00	0.00	1.68
12	I1_AR1	ActiveIntronRegion	0	1.63	2.16	2.71	1.37	0.00	0.92	2.11	0.18	0.96	1.64	1.11	2.04	1.24	1.97	0.88	3.18	0.39	3.63	1.52	2.10	2.82	1.03	1.21	0.00	2.01	3.88	0.52	0.62	0.51
13	I1_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.25	0.63	0.58	0.00	0.48	0.00	0.00	1.12	1.44	0.00	0.00	1.17	0.00	0.00	0.00	1.01	5.27	0.00	0.00	0.00
14	I1_AR2	ActiveIntronRegion	0	0.93	0.00	0.00	0.00	0.00	0.94	0.00	0.00	0.00	1.51	0.00	0.00	0.77	0.00	4.58	1.78	0.00	0.00	0.10	2.75	5.45	1.23	0.00	1.61	0.55	0.61	0.00	0.00	0.00
15	I1_SR2	SilentIntronRegion	0	3.95	0.00	1.24	0.00	0.00	3.58	0.91	0.00	1.77	5.16	1.07	1.61	0.29	2.13	2.78	2.67	2.90	2.42	5.73	5.89	6.26	1.48	0.59	2.28	1.82	1.89	0.83	0.36	0.00
16	I1_AR3	ActiveIntronRegion	0	2.99	0.77	1.86	0.00	0.00	3.06	0.00	0.00	1.49	4.45	0.19	0.41	0.43	1.71	2.98	0.82	3.28	1.15	2.79	4.33	6.91	2.14	0.76	0.71	3.29	2.27	2.11	0.82	0.44
17	E2_Aa	NovelBoundary	0	3.01	0.00	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	3.80	0.00	0.00	1.97	0.00	0.00	2.19	0.00	0.00	3.24
18	ER2a	ExonRegion	0	24.90	6.63	16.55	17.55	10.87	12.05	4.87	4.89	6.46	11.16	22.40	10.39	3.85	17.02	4.48	30.23	23.86	13.50	15.72	4.70	24.59	15.96	14.40	3.99	16.42	19.46	14.25	5.10	13.18
19	E2_Da	NovelBoundary	0	0.00	4.85	0.00	0.00	0.00	1.76	0.00	0.00	3.05	0.00	0.00	0.00	3.25	2.35	0.00	3.44	1.13	0.00	0.00	4.13	0.00	0.00	0.00	5.20	0.00	0.00	0.00	0.00	5.25
20	E2a_E3a	KnownJunction	0	16.10	9.40	5.26	0.00	7.37	0.00	0.00	0.00	0.00	0.00	4.30	4.40	2.87	4.79	0.00	13.39	3.87	0.00	0.00	0.00	5.70	0.00	0.00	3.05	7.24	0.00	2.29	4.49	7.00
21	E2a_E4b	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.02	0.00
22	E3_Aa	NovelBoundary	0	2.83	3.78	4.81	0.00	6.78	5.03	0.00	4.08	0.00	5.63	0.00	1.48	4.17	0.00	16.74	3.44	11.70	0.00	0.00	18.86	3.49	0.00	2.12	0.00	0.00	0.00	1.99	4.36	0.00
23	ER3a	ExonRegion	0	15.97	15.22	19.41	18.56	12.80	12.76	5.16	0.46	5.30	14.90	15.14	12.29	10.60	27.26	7.41	25.42	8.27	10.36	25.40	18.41	18.79	18.94	6.63	8.63	10.36	21.80	1.38	4.19	11.86
24	E3_Da	NovelBoundary	0	277.70	96.66	280.87	184.85	129.54	188.12	231.32	275.35	200.19	182.83	62.95	224.75	211.13	137.30	187.96	178.93	329.54	28.00	24.05	219.24	188.28	99.67	129.13	146.31	81.19	179.85	62.47	217.47	158.56
25	E3a_E4b	KnownJunction	0	39.46	26.76	14.03	9.71	6.34	30.69	9.96	2.49	7.70	16.50	29.10	14.28	17.58	50.94	19.93	31.75	14.86	15.41	40.24	22.33	27.68	42.15	4.38	12.56	13.26	34.20	10.44	8.31	25.02
26	ER4a	ExonRegion	0	7.04	2.82	1.92	1.04	0.71	4.91	1.44	1.05	0.96	2.27	4.59	2.30	2.60	10.11	2.40	4.70	3.01	5.07	6.47	3.21	5.71	5.92	1.81	1.84	2.65	4.71	1.31	0.93	3.64
27	ER4b	ExonRegion	0	65.44	56.70	13.15	7.95	6.61	56.37	19.75	13.38	18.82	52.20	59.14	46.69	17.54	84.55	30.16	107.58	42.88	61.69	107.05	67.65	57.59	52.31	32.06	17.64	32.16	38.35	13.58	17.05	31.70
28	E4a_E5a	KnownJunction	0	43.35	34.81	16.77	0.00	0.00	27.78	25.35	2.54	12.97	92.79	44.54	61.35	24.46	72.39	15.75	89.66	50.49	65.63	80.70	32.34	42.52	43.76	31.27	13.58	26.37	46.86	36.08	25.21	38.36
29	E4a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	16.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	I4_AR1	ActiveIntronRegion	0	0.58	0.65	0.00	0.00	0.00	0.00	0.00	0.52	0.00	0.66	0.00	2.17	0.00	0.00	0.00	0.70	0.00	0.36	0.83	0.00	1.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.56
31	I4_AR2	ActiveIntronRegion	0	0.00	1.82	0.00	0.00	0.00	0.43	0.00	0.00	0.94	0.43	0.00	1.99	0.57	0.30	0.00	0.83	0.00	0.29	1.07	0.00	2.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	I4_AR3	ActiveIntronRegion	0	0.35	1.04	0.54	0.00	0.79	6.42	0.65	4.16	0.49	2.05	2.69	0.77	1.46	4.60	0.00	4.40	0.48	0.62	0.00	0.44	4.64	3.45	0.29	0.00	0.69	0.51	3.55	0.00	0.65
33	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER5a	ExonRegion	0	75.67	92.17	54.17	49.10	41.57	114.37	61.15	24.11	35.64	101.13	131.03	91.56	44.04	144.67	44.72	111.83	61.02	84.67	139.00	102.77	102.30	62.43	47.71	65.72	54.41	43.70	54.18	33.39	48.42
35	E5a_E6a	KnownJunction	0	3.01	4.07	1.54	0.00	0.00	0.00	0.00	2.19	6.94	3.67	13.76	4.07	0.00	6.12	0.00	0.00	0.00	0.00	0.00	3.72	0.00	6.90	4.24	3.05	1.74	6.31	0.00	0.00	0.00
36	E5a_E7a	KnownJunction	0	49.37	153.38	84.98	60.39	27.12	67.10	61.73	18.41	61.73	112.53	74.63	88.01	71.97	142.33	92.88	81.24	64.38	78.47	186.13	106.10	108.86	56.98	38.41	97.74	64.18	56.86	34.94	51.13	43.41
37	E5a_E8a	NovelJunction	0	0.00	3.97	0.00	0.00	0.00	4.68	0.00	0.00	0.00	2.04	11.42	0.00	0.00	1.37	0.00	0.00	1.40	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E5a_E9a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	3.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER6a	ExonRegion	0	2.50	3.21	2.16	0.00	0.00	1.51	0.00	2.45	6.53	4.43	10.26	1.68	1.30	4.38	0.00	2.77	0.45	1.17	4.53	2.41	0.31	8.07	1.03	2.30	2.31	2.39	0.00	0.12	1.34
41	E6a_E7a	KnownJunction	0	3.01	0.00	0.00	0.00	0.00	1.42	0.00	1.99	5.06	3.28	5.57	1.14	1.88	3.23	0.00	0.00	1.08	4.62	8.09	0.00	1.52	0.00	0.00	2.93	4.77	2.19	0.00	0.00	1.25
42	E7_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER7a	ExonRegion	0	91.58	150.56	79.51	45.45	42.80	133.66	64.77	29.26	78.93	147.69	146.05	118.95	86.35	166.15	70.58	119.82	80.31	84.01	132.77	119.02	122.95	77.41	59.35	109.81	67.40	67.66	90.34	44.59	77.46
44	E7a_E8a	KnownJunction	0	119.21	146.98	69.09	41.20	50.70	114.07	55.38	30.11	93.67	126.07	112.14	94.34	96.68	156.60	80.92	85.45	61.25	99.15	194.22	127.60	116.52	90.43	84.22	123.70	43.72	59.65	68.63	60.07	79.17
45	E8_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	7.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER8a	ExonRegion	0	97.42	126.63	87.02	51.60	54.17	125.08	81.03	34.33	85.31	145.68	137.05	110.59	84.11	161.19	81.25	133.38	70.32	80.99	147.89	122.92	113.75	115.30	57.30	108.56	61.80	91.97	75.84	49.91	101.14
47	E8_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E8a_E9a	KnownJunction	0	85.82	122.06	105.14	82.83	61.60	116.94	105.85	34.24	78.51	165.77	172.03	115.36	78.43	143.46	112.22	124.31	92.33	79.37	129.48	120.41	84.35	125.68	44.87	93.79	74.29	89.52	81.01	49.74	113.57
49	ER9a	ExonRegion	0	104.56	109.15	87.12	66.19	47.69	98.38	65.01	39.64	63.89	113.31	119.92	113.77	107.29	140.03	80.10	97.20	72.40	79.06	89.24	109.38	91.93	114.64	38.82	105.72	61.80	94.02	86.04	48.24	88.40
50	E9_Da	NovelBoundary	0	0.00	3.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
51	E9a_E10a	KnownJunction	0	133.60	105.09	59.30	143.87	47.31	85.18	62.02	54.74	73.63	108.93	97.05	119.06	120.69	150.47	59.20	76.50	65.30	46.75	40.46	105.36	84.71	150.91	66.93	110.12	71.45	82.22	9.64	30.82	102.21
52	E10_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER10a	ExonRegion	0	105.46	94.59	72.90	57.26	41.09	70.28	66.68	52.82	62.57	102.02	102.95	103.84	91.88	154.44	97.20	102.90	58.11	92.35	111.83	105.05	63.18	117.79	67.71	106.21	58.72	89.35	57.87	43.02	84.03
54	E10_Da	NovelBoundary	0	2.48	0.00	4.36	0.00	0.00	5.87	5.72	0.00	1.43	4.07	4.18	4.43	0.00	11.81	0.00	0.00	5.74	13.87	0.00	4.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	E10a_E11a	KnownJunction	0	79.45	111.40	96.64	52.41	35.22	64.88	49.15	71.21	67.88	65.35	110.94	91.23	103.53	148.34	144.51	83.54	54.07	102.36	105.20	93.45	94.62	130.98	61.41	115.62	47.55	94.33	44.48	41.20	73.98
56	I10	Intron	0	7.18	7.00	1.28	1.33	1.29	6.68	2.79	0.83	3.08	6.52	2.73	3.03	0.78	6.24	4.44	7.29	4.84	7.53	12.24	4.12	6.07	0.83	0.71	3.12	1.76	1.15	0.56	0.70	1.85
57	I10_SR1	SilentIntronRegion	0	8.52	5.70	1.29	1.84	0.42	5.65	2.73	1.26	1.66	9.71	3.77	4.05	0.44	8.88	2.31	5.36	3.85	7.80	9.36	4.20	6.23	1.50	1.08	1.53	1.05	1.75	1.57	0.36	1.49
58	I10_AR1	ActiveIntronRegion	0	12.45	4.60	2.46	0.00	0.48	8.53	3.09	1.37	1.87	7.35	3.16	3.42	0.23	10.93	0.95	6.05	3.01	8.36	10.36	3.49	5.30	0.44	0.00	2.30	3.06	1.00	0.00	1.97	1.28
59	I10_SR2	SilentIntronRegion	0	4.91	6.57	1.05	1.28	2.29	5.83	3.00	0.49	2.03	6.32	2.73	1.65	0.49	5.36	2.72	6.12	4.05	6.52	11.12	2.90	6.42	1.20	0.89	1.66	1.63	1.57	0.29	0.51	1.07
60	I10_AR2	ActiveIntronRegion	0	3.60	4.00	0.74	0.00	0.79	4.80	1.95	0.50	2.87	3.67	2.40	2.58	0.21	4.43	3.67	4.79	2.93	6.40	12.35	6.50	3.86	0.00	0.58	4.15	1.97	0.51	0.29	0.52	0.32
61	I10_SR3	SilentIntronRegion	0	2.32	0.00	0.31	0.00	0.00	3.14	0.00	0.40	4.36	1.21	1.24	0.00	0.00	3.50	1.99	3.47	5.01	4.97	8.87	5.35	5.16	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00
62	I10_AR3	ActiveIntronRegion	0	7.72	14.43	1.85	2.22	0.78	8.88	1.50	0.88	3.35	8.40	4.78	5.52	1.04	4.92	8.82	9.59	5.84	13.30	13.96	7.11	8.30	0.00	0.37	5.28	1.87	1.25	0.00	0.52	4.87
63	I10_SR4	SilentIntronRegion	0	12.11	8.26	1.89	1.39	0.00	8.19	2.71	1.56	4.73	5.06	2.10	5.46	0.46	7.27	8.66	12.86	8.89	9.17	14.76	5.09	5.10	0.51	0.97	5.91	1.85	0.30	1.03	0.92	3.22
64	I10_AR4	ActiveIntronRegion	0	3.93	0.55	0.00	0.00	0.00	0.00	0.00	0.00	4.12	1.68	0.00	1.24	1.30	1.21	5.60	0.00	0.00	0.00	18.10	0.00	2.85	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00
65	I10_AR5	ActiveIntronRegion	0	8.16	9.41	0.74	2.54	0.86	8.52	3.39	0.82	7.97	6.01	1.16	4.10	3.33	4.30	10.71	10.42	7.27	6.85	18.28	5.41	6.21	0.32	0.32	7.28	1.77	0.28	1.14	0.87	3.96
66	E11_Aa	NovelBoundary	0	5.90	4.65	5.26	0.00	0.00	9.48	0.00	1.84	9.11	5.91	1.61	1.20	0.00	14.98	0.00	11.47	15.85	9.25	32.37	3.89	13.28	7.39	2.51	12.80	3.41	2.02	0.00	6.25	2.05
67	ER11a	ExonRegion	0	106.02	122.78	86.10	50.96	34.39	78.36	69.03	59.65	131.20	106.71	121.50	123.61	105.70	164.78	136.90	133.93	76.34	99.73	143.78	100.35	82.43	119.28	71.88	137.75	80.26	97.27	71.65	47.40	105.29
68	E11_Da	KnownBoundary	0	95.38	139.61	89.00	20.92	38.91	75.12	96.18	80.02	141.97	120.52	148.71	146.47	106.93	180.33	153.48	153.61	68.52	113.28	226.36	117.76	111.55	130.29	42.99	163.36	87.55	97.93	100.29	53.83	118.65
69	ER11b	ExonRegion	0	57.22	76.88	47.54	28.79	22.70	64.51	49.67	47.44	87.51	62.68	69.92	69.82	71.54	113.21	124.91	80.42	50.22	67.08	92.97	62.73	54.14	82.03	36.68	87.20	37.92	52.98	43.34	24.28	77.14
70	ER11c	ExonRegion	0	2.14	0.00	1.12	9.75	0.00	2.75	1.34	0.00	2.62	3.37	3.17	4.12	0.00	1.51	7.47	0.84	2.00	6.37	12.07	1.87	1.43	0.00	0.00	2.15	0.48	2.62	0.00	0.00	0.00