Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 FAM3A Gene 0 30.95 46.74 21.76 44.85 33.83 76.31 94.43 2 322269 Transcript 0 6.62 12.20 2.50 10.32 7.26 17.60 21.41 3 356180 Transcript 1 11.21 3.38 5.67 8.25 24.35 16.31 35.40 4 359889 Transcript 0 0 0 0 0 0 0 0 5 369641 Transcript 0 3.92 12.98 3.42 2.71 6.13 6.45 18.10 6 393572 Transcript 0 0.65 2.36 0.73 6.69 3.09 8.07 3.48 7 369643 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 IG26_SR3 SilentIntergenicRegion 0 4.50 3.22 4.98 5.67 1.73 7.52 8.89 9 IG26_AR13 ActiveIntergenicRegion 0 16.27 2.56 5.29 8.40 1.22 8.27 10.45 10 IG26_AR12 ActiveIntergenicRegion 0 16.97 5.14 6.08 13.51 4.49 12.00 11.03 11 IG26_AR11 ActiveIntergenicRegion 0 5.14 4.25 4.98 12.06 1.84 12.77 9.01 12 IG26_AR10 ActiveIntergenicRegion 0 3.11 2.43 4.56 5.69 1.94 20.68 7.66 13 IG26_AR9 ActiveIntergenicRegion 0 2.23 1.76 4.03 7.79 3.24 16.43 6.88 14 IG26_AR8 ActiveIntergenicRegion 0 0.77 1.21 2.71 6.80 2.43 15.05 5.52 15 IG26_AR7 ActiveIntergenicRegion 0 0.83 0.43 2.62 8.22 0.81 4.94 3.34 16 ER1a ExonRegion 0 4.21 3.34 1.59 1.62 7.29 3.10 6.46 17 E1_Ab KnownBoundary 0 13.15 5.86 5.16 1.63 17.50 6.41 20.12 18 ER1b ExonRegion 0 9.47 8.20 3.61 5.46 11.22 8.28 16.63 19 E1_Ac KnownBoundary 0 7.31 4.78 2.82 5.82 1.94 10.08 13.70 20 ER1c ExonRegion 0 4.79 5.25 2.45 5.89 2.71 10.45 13.06 21 E1_Ad KnownBoundary 0 2.79 3.44 1.67 4.39 2.90 11.90 5.86 22 ER1d ExonRegion 0 10.69 15.70 4.82 14.05 5.21 28.47 22.69 23 E1_Da KnownBoundary 0 10.40 15.71 5.89 26.98 11.60 47.60 22.07 24 E1a_E1e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER1e ExonRegion 0 5.82 24.42 7.50 22.87 16.31 50.18 25.02 26 E1_Db KnownBoundary 1 6.16 25.04 3.72 18.12 8.02 32.11 31.53 27 E1b_E1e KnownJunction 0 11.30 25.30 7.24 16.12 8.51 39.90 38.57 28 ER1f ExonRegion 1 9.03 21.06 3.41 19.01 7.22 32.11 36.36 29 E1_Ae KnownBoundary 1 19.13 34.55 6.34 23.00 14.36 51.35 64.49 30 ER1g ExonRegion 0 22.43 46.77 10.96 38.20 18.72 70.21 93.99 31 E1c_E2a KnownJunction 0 28.32 46.63 18.35 41.48 29.25 56.52 104.07 32 E1c_E4a KnownJunction 0 0.65 2.36 0.73 6.69 3.09 8.07 3.48 33 ER2a ExonRegion 0 38.91 64.45 26.32 50.36 40.54 85.56 151.69 34 E2a_E3a KnownJunction 1 10.51 2.60 6.83 10.13 22.96 17.71 39.76 35 E2a_E4a KnownJunction 0 24.37 73.77 18.26 45.19 36.88 91.23 119.02 36 E3_Aa NovelBoundary 0 471.16 328.39 455.65 338.42 378.04 261.03 283.29 37 ER3a ExonRegion 0 11.90 4.17 4.51 6.37 25.74 14.90 31.05 38 E3_Da NovelBoundary 0 24.02 10.17 18.37 8.32 17.34 12.44 35.24 39 ER4a ExonRegion 0 24.88 77.80 16.85 43.38 38.06 80.76 127.05 40 E5_Aa NovelBoundary 0 1.99 7.54 2.33 15.12 1.08 9.14 17.97 41 ER5a ExonRegion 0 37.24 73.87 28.77 48.92 44.35 74.80 149.56 42 E5a_E6a KnownJunction 0 31.78 66.68 35.77 50.71 68.51 72.79 168.51 43 ER6a ExonRegion 0 30.74 67.52 35.48 36.97 66.83 72.98 145.17 44 E6a_E7a KnownJunction 1 3.50 12.93 2.47 1.16 4.06 5.82 15.86 45 E6a_E7b KnownJunction 0 22.78 44.00 26.40 20.62 40.43 57.65 87.56 46 E6a_E8a NovelJunction 0 2.80 14.08 2.26 26.25 8.64 35.21 17.47 47 ER7a ExonRegion 1 4.33 13.03 4.37 4.25 8.21 7.08 20.33 48 ER7b ExonRegion 0 37.22 48.33 35.67 40.65 46.50 56.54 115.52 49 E7a_E8a KnownJunction 0 47.78 50.68 32.53 46.57 55.00 54.91 122.16 50 ER8a ExonRegion 0 39.44 81.55 39.78 67.94 49.01 113.21 141.85 51 E8a_E9a KnownJunction 0 38.84 71.22 48.31 73.15 21.55 110.04 129.76 52 ER9a ExonRegion 0 51.23 82.12 44.29 72.99 66.45 132.75 173.24 53 E9a_E10a KnownJunction 0 45.85 70.85 41.69 73.25 57.54 144.99 210.90 54 ER10a ExonRegion 0 41.22 55.13 29.74 63.60 49.38 102.88 133.67 55 E10_Da KnownBoundary 0 28.76 46.97 19.82 47.71 35.04 113.68 92.37 56 ER10b ExonRegion 0 40.81 48.78 23.33 60.21 31.73 101.44 84.34 57 ER10c ExonRegion 0 2.11 2.73 0.00 0.00 1.62 1.23 2.87