Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PAK3	Gene	0	10.40	1.86	26.53	8.12	9.53	18.40	1.40
2	372010	Transcript	0	0.41	0.03	0.69	0.86	0.49	0.47	0.02
3	262836	Transcript	0	0	0	0	0	0	0	0
4	360648	Transcript	0	0.00	0.00	0.00	0.79	0.00	2.01	0.19
5	372007	Transcript	0	11.80	1.63	38.30	15.44	8.16	20.85	2.41
6	ER1a	ExonRegion	0	1.06	0.00	1.72	0.00	0.31	1.04	0.00
7	ER1b	ExonRegion	0	5.52	1.64	3.40	4.70	2.35	6.42	0.00
8	E1a_E2a	KnownJunction	0	10.28	2.86	3.22	12.46	4.31	15.68	0.00
9	ER2a	ExonRegion	0	9.06	4.81	5.98	14.33	6.60	15.54	1.92
10	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	E2a_E3b	KnownJunction	0	9.98	3.91	7.11	11.35	8.00	19.89	3.10
12	ER3a	ExonRegion	0	0.35	0.14	0.48	2.21	1.32	0.84	0.08
13	E3_Ab	KnownBoundary	0	0.00	0.00	0.65	3.06	1.18	1.02	0.00
14	ER3b	ExonRegion	0	9.32	3.42	8.12	17.34	11.97	24.49	0.96
15	E3a_E4a	KnownJunction	0	6.24	2.92	2.27	5.17	3.09	11.52	1.76
16	E3a_E5a	NovelJunction	0	1.03	1.29	3.16	11.43	6.39	9.46	0.89
17	I3_AR3	ActiveIntronRegion	0	7.48	2.86	3.65	8.30	7.35	8.95	0.50
18	I3_AR4	ActiveIntronRegion	0	7.66	1.66	5.04	4.36	3.55	7.91	0.35
19	E4_Aa	NovelBoundary	0	4.54	0.00	2.97	3.28	2.05	9.92	0.00
20	ER4a	ExonRegion	0	10.64	4.93	11.24	12.43	8.51	16.10	1.70
21	E4a_E5a	KnownJunction	0	12.30	3.78	17.46	10.92	8.25	21.55	1.39
22	ER5a	ExonRegion	0	14.24	5.31	36.16	17.61	19.42	33.92	2.08
23	E5_Da	NovelBoundary	0	3.17	3.26	14.03	18.96	4.36	9.92	0.00
24	E5a_E6a	KnownJunction	0	17.44	0.00	44.65	18.12	6.09	25.33	2.82
25	I5_AR1	ActiveIntronRegion	0	13.89	3.48	16.34	16.90	25.66	20.79	2.47
26	I5_SR1	SilentIntronRegion	0	22.57	3.60	24.07	10.99	35.46	33.14	1.96
27	I5_AR2	ActiveIntronRegion	0	14.74	3.01	15.07	15.52	27.36	20.04	1.74
28	I5_SR2	SilentIntronRegion	0	8.15	0.00	6.79	7.95	19.62	2.81	0.37
29	I5_AR3	ActiveIntronRegion	0	6.39	1.03	7.15	7.04	20.59	8.04	1.30
30	ER6a	ExonRegion	0	17.64	1.46	38.50	17.07	7.85	24.17	1.75
31	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	1.14	0.00	3.56	0.56
32	E6a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E6a_E9a	KnownJunction	0	11.80	1.63	38.30	15.44	8.16	20.85	2.41
34	ER7a	ExonRegion	0	0.00	0.00	0.00	1.25	0.00	2.47	0.00
35	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER8a	ExonRegion	0	0.00	0.00	0.00	0.06	0.00	0.25	0.00
37	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.05	0.00
38	ER9a	ExonRegion	0	20.66	0.88	40.30	19.51	11.96	34.70	2.91
39	E9a_E10a	KnownJunction	0	14.45	0.00	26.38	15.63	16.87	34.76	0.00
40	ER10a	ExonRegion	0	14.40	0.00	33.01	15.06	13.36	32.78	0.09
41	E10a_E11a	KnownJunction	0	8.70	0.00	29.70	10.27	6.22	21.25	0.00
42	ER11a	ExonRegion	0	11.21	1.20	26.44	8.86	7.23	30.72	1.14
43	E11a_E12a	KnownJunction	0	14.25	1.39	34.32	10.70	8.21	17.80	0.00
44	ER12a	ExonRegion	0	13.89	2.39	37.67	7.49	12.41	16.50	0.61
45	E12a_E13a	KnownJunction	1	13.40	0.00	42.64	5.20	9.15	31.60	1.16
46	ER13a	ExonRegion	1	12.22	0.00	32.95	2.08	10.76	21.59	1.32
47	E13a_E14a	KnownJunction	0	11.05	0.00	19.83	2.41	10.74	9.78	0.82
48	ER14a	ExonRegion	0	12.12	1.24	32.33	6.36	12.96	15.39	0.70
49	E14a_E15a	KnownJunction	0	10.77	2.94	33.20	9.67	13.90	17.55	0.76
50	ER15a	ExonRegion	0	13.10	4.14	41.81	6.38	10.07	17.36	2.08
51	E15a_E16a	KnownJunction	0	8.81	5.57	39.89	5.80	5.16	13.13	0.57
52	E16_Aa	NovelBoundary	1	2.92	0.00	20.65	0.00	0.00	0.00	0.00
53	ER16a	ExonRegion	1	9.44	3.01	32.01	1.94	10.89	14.23	1.46
54	E16a_E17a	KnownJunction	0	9.15	1.63	26.76	5.01	6.39	6.83	1.30
55	ER17a	ExonRegion	0	10.76	1.32	43.77	2.94	11.87	15.95	1.97
56	E17a_E18a	KnownJunction	1	10.51	0.00	43.04	4.28	4.22	29.13	1.71
57	ER18a	ExonRegion	1	8.79	0.73	33.67	4.10	10.59	21.71	1.77
58	E18a_E19a	KnownJunction	0	8.33	4.73	31.51	4.04	4.61	22.19	0.54
59	ER19a	ExonRegion	0	7.19	2.04	22.47	5.35	9.69	13.15	0.78
60	E19a_E20a	KnownJunction	0	7.53	4.33	23.50	4.71	14.73	5.71	0.00
61	E20_Aa	NovelBoundary	0	4.87	1.00	13.88	2.17	6.18	4.29	0.00
62	ER20a	ExonRegion	0	7.75	0.23	23.11	3.75	6.86	11.38	1.37
63	ER20b	ExonRegion	0	0.24	0.00	0.57	1.25	0.31	0.00	0.00
64	IG4_AR2	ActiveIntergenicRegion	0	13.06	0.51	31.20	3.23	8.86	6.32	0.49
65	IG4_SR1	SilentIntergenicRegion	0	7.99	0.74	29.05	5.30	5.63	4.49	0.38
66	IG4_AR3	ActiveIntergenicRegion	0	9.65	0.43	26.15	4.27	10.99	10.01	0.87