Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CENPI	Gene	0	2.29	0.61	1.10	0.60	74.03	0.37	2.53
2	403304	Transcript	0	0.33	0.00	0.00	0.00	49.88	0.00	0.38
3	372926	Transcript	0	0.00	0.00	0.00	0.00	3.20	0.00	0.19
4	372927	Transcript	0	0.84	0.00	0.10	0.00	82.01	0.27	1.81
5	218507	Transcript	0	0.00	0.00	0.00	0.00	3.09	0.00	0.00
6	ER1a	ExonRegion	0	0.39	0.00	0.00	0.00	49.40	0.00	0.36
7	E1a_E2a	KnownJunction	0	0.80	0.00	0.00	0.00	105.37	0.00	0.89
8	ER2a	ExonRegion	0	0.14	0.00	0.00	0.00	36.04	0.00	0.26
9	E2a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	8.71	0.00	0.00
10	E3_Aa	NovelBoundary	0	18.19	16.26	20.43	13.22	9.71	2.73	9.19
11	ER3a	ExonRegion	0	18.09	9.21	14.96	9.02	21.30	3.44	6.44
12	E3_Da	NovelBoundary	0	1321.49	802.51	1096.79	791.57	1355.32	1316.35	562.21
13	E3a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	4.47	0.00	0.00
14	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	3.09	0.00	0.00
15	ER4b	ExonRegion	0	1.17	0.00	0.44	0.00	90.87	0.00	1.84
16	E4a_E5a	KnownJunction	0	1.55	0.00	0.00	0.00	139.15	0.00	3.55
17	ER5a	ExonRegion	0	3.50	0.00	0.25	0.00	145.11	2.01	3.07
18	E5a_E6a	KnownJunction	0	4.52	0.00	0.00	0.00	213.24	3.32	4.03
19	ER6a	ExonRegion	0	3.69	0.00	0.00	0.00	152.96	0.80	3.49
20	E6a_E7a	KnownJunction	0	2.25	0.00	0.00	0.00	141.98	0.00	3.48
21	ER7a	ExonRegion	0	2.84	0.00	0.00	0.00	178.61	0.00	4.82
22	E7a_E8a	KnownJunction	0	4.37	0.00	0.00	0.00	152.70	0.00	3.78
23	ER8a	ExonRegion	0	2.73	0.00	0.07	0.00	146.00	0.00	5.58
24	E8a_E9a	KnownJunction	0	1.69	0.00	0.00	0.00	148.55	0.00	4.20
25	ER9a	ExonRegion	0	0.28	0.00	0.68	0.00	147.98	0.00	4.26
26	E9a_E10a	KnownJunction	0	0.00	0.00	0.79	0.00	133.68	0.00	3.10
27	E9a_E11a	NovelJunction	0	0.00	0.00	0.00	0.00	9.27	0.00	0.79
28	ER10a	ExonRegion	0	0.99	0.00	0.27	0.00	128.22	0.00	2.47
29	E10a_E11a	KnownJunction	0	0.70	0.00	0.62	0.00	91.68	0.00	2.16
30	ER11a	ExonRegion	0	1.88	0.00	0.34	0.00	76.91	0.00	2.71
31	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	55.14	0.00	1.39
32	ER12a	ExonRegion	0	2.43	0.00	0.00	0.00	75.06	0.00	2.32
33	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	70.61	0.00	3.47
34	ER13a	ExonRegion	0	1.82	0.00	0.00	0.00	66.99	0.00	2.72
35	E13a_E14a	KnownJunction	0	0.80	0.00	0.00	0.00	88.38	0.00	3.30
36	ER14a	ExonRegion	0	0.71	0.00	0.00	0.00	102.25	0.00	3.91
37	E14a_E15a	KnownJunction	0	0.70	0.00	0.00	0.00	86.59	0.00	6.45
38	ER15a	ExonRegion	0	0.87	0.00	0.00	0.00	70.70	0.00	3.02
39	E15a_E16a	KnownJunction	0	2.39	0.00	0.00	0.00	111.09	0.00	2.09
40	ER16a	ExonRegion	0	1.81	0.00	0.00	0.00	111.52	0.00	2.78
41	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	88.98	0.00	5.46
42	ER17a	ExonRegion	0	0.24	0.00	0.00	0.00	82.53	0.00	4.87
43	E17_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	3.34	0.00	0.00
44	E17a_E18a	KnownJunction	0	1.02	0.00	0.00	0.00	85.69	0.00	2.77
45	ER17b	ExonRegion	0	0.00	0.00	0.00	0.00	3.20	0.00	0.19
46	ER18a	ExonRegion	0	1.03	0.00	0.14	0.00	79.78	0.00	1.93
47	E18a_E19a	KnownJunction	0	0.68	0.00	0.85	0.00	61.74	0.00	4.61
48	ER19a	ExonRegion	0	0.74	0.00	0.28	0.00	82.19	0.00	4.41
49	E19a_E20a	KnownJunction	0	0.88	0.00	0.00	0.00	87.58	0.00	3.27
50	ER20a	ExonRegion	0	1.02	0.00	0.68	0.00	69.85	0.00	4.34
51	E20a_E21a	KnownJunction	0	1.03	0.00	0.79	0.00	73.26	0.00	4.01
52	ER21a	ExonRegion	0	1.84	0.00	0.07	0.00	75.92	0.00	2.57
53	E21a_E22a	KnownJunction	0	1.74	0.00	0.00	0.00	57.33	0.00	0.00
54	ER22a	ExonRegion	0	0.77	0.00	0.00	0.00	63.55	0.00	1.99
55	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	73.75	0.00	2.62
56	ER23a	ExonRegion	0	0.39	0.00	0.00	0.00	68.45	0.00	2.26
57	E23_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	58.58	0.00	1.48
58	ER23b	ExonRegion	0	0.84	0.00	0.10	0.00	82.01	0.27	1.81
59	IG2_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	10.84	0.00	0.00
60	IG2_SR2	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	14.89	0.51	0.00
61	IG2_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	19.60	0.00	0.00