Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SYTL4	Gene	0	28.60	30.53	2.48	2.21	1.76	48.90	3.18
2	263033	Transcript	0	0.00	0.00	0.00	0.00	0.00	3.68	0.00
3	372981	Transcript	0	5.76	6.45	0.72	0.60	1.23	4.79	0.67
4	372989	Transcript	0	19.68	7.71	10.14	1.14	5.96	8.49	1.87
5	276141	Transcript	0	2.18	1.72	0.62	0.31	1.08	2.25	0.51
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	3.68	0.00
7	ER1b	ExonRegion	1	6.01	3.18	0.46	0.00	0.00	16.30	0.88
8	E1a_E5b	KnownJunction	1	0.87	0.00	1.72	0.00	0.00	11.47	0.00
9	ER2a	ExonRegion	0	1.16	6.13	0.55	0.00	0.00	4.86	0.00
10	E2a_E3a	KnownJunction	0	4.56	2.44	0.00	0.00	0.00	6.99	0.00
11	ER3a	ExonRegion	0	4.78	1.76	0.46	0.00	0.00	4.81	0.41
12	E3a_E4a	KnownJunction	0	3.47	1.60	0.79	0.00	0.00	1.13	0.87
13	E3a_E5b	NovelJunction	0	2.17	4.26	0.00	0.00	0.00	10.75	1.62
14	ER4a	ExonRegion	0	46.08	20.87	15.89	5.59	40.91	8.62	7.41
15	E4_Da	NovelBoundary	0	18.03	6.44	18.93	8.59	18.70	4.15	6.56
16	E4a_E5b	KnownJunction	0	76.92	13.90	53.31	1.54	0.83	20.31	3.08
17	ER5a	ExonRegion	0	2.18	1.72	0.62	0.31	1.08	2.25	0.51
18	ER5b	ExonRegion	0	17.78	22.80	2.05	1.78	0.07	63.30	3.65
19	E5a_E6a	KnownJunction	0	13.08	23.99	3.08	0.00	0.00	65.66	3.60
20	ER6a	ExonRegion	0	30.82	24.99	1.02	2.33	0.18	73.52	6.72
21	E6a_E7a	KnownJunction	0	44.40	28.87	0.82	1.46	0.00	75.39	10.59
22	ER7a	ExonRegion	0	40.34	28.96	1.10	1.88	0.36	83.58	6.38
23	E7a_E8a	KnownJunction	0	33.78	34.07	0.80	1.68	2.07	76.22	5.49
24	ER8a	ExonRegion	0	32.54	29.11	0.16	0.74	0.52	46.11	6.20
25	E8a_E9a	KnownJunction	0	32.45	28.35	0.00	1.44	1.11	54.03	4.43
26	ER9a	ExonRegion	0	30.54	33.66	1.65	1.59	0.27	65.64	3.46
27	E9a_E10a	KnownJunction	0	22.46	25.19	3.58	0.00	0.00	51.99	3.05
28	E10_Aa	NovelBoundary	0	12.83	15.47	2.47	0.00	0.00	18.87	1.68
29	ER10a	ExonRegion	0	31.86	48.71	2.15	0.31	0.00	55.65	4.32
30	E10a_E11a	KnownJunction	0	41.51	49.55	2.08	1.35	0.00	71.10	4.54
31	E11_Aa	NovelBoundary	0	10.53	6.07	0.00	0.00	0.00	1.58	0.00
32	ER11a	ExonRegion	0	44.77	59.74	4.85	3.34	0.45	74.72	3.95
33	E11a_E12a	KnownJunction	0	41.91	47.29	2.47	3.47	0.00	68.85	2.97
34	E12_Aa	NovelBoundary	0	17.34	3.07	1.01	0.00	0.00	6.22	0.89
35	ER12a	ExonRegion	0	45.37	62.90	3.22	3.42	0.79	63.40	5.90
36	E12a_E13a	KnownJunction	0	49.57	63.79	4.25	1.27	0.00	58.45	3.65
37	ER13a	ExonRegion	0	46.81	70.78	2.50	3.34	0.78	68.25	6.42
38	E13_Da	KnownBoundary	0	12.22	17.97	0.75	1.68	0.00	12.06	1.59
39	E13a_E13b	KnownJunction	0	48.63	53.78	1.64	5.04	0.99	53.60	5.89
40	ER13b	ExonRegion	0	7.28	10.88	0.45	0.05	0.00	5.59	0.44
41	E13_Ab	KnownBoundary	0	4.44	4.20	0.89	0.00	0.00	10.10	0.00
42	ER13c	ExonRegion	0	43.12	63.73	1.70	2.93	0.78	72.40	5.59
43	E13_Db	KnownBoundary	0	3.12	1.18	0.86	0.00	0.00	12.73	0.00
44	E13b_E13c	KnownJunction	0	49.62	61.40	3.19	1.68	0.90	71.64	4.50
45	ER13d	ExonRegion	0	2.22	4.05	0.08	0.43	0.00	5.60	0.20
46	E13_Ac	KnownBoundary	0	3.87	6.70	0.00	1.35	0.00	4.66	0.00
47	ER13e	ExonRegion	0	40.07	63.34	2.01	3.67	1.37	65.84	4.66
48	E13_Dc	KnownBoundary	0	4.86	4.89	0.00	0.00	0.00	2.76	0.85
49	E13c_E13d	KnownJunction	0	33.26	60.53	0.69	1.14	1.08	65.26	2.79
50	ER13f	ExonRegion	0	4.57	6.34	0.26	0.18	0.08	4.38	0.35
51	E13_Ad	KnownBoundary	0	3.15	5.75	0.00	0.00	0.00	3.81	0.00
52	ER13g	ExonRegion	0	33.42	64.80	2.09	3.02	0.34	71.85	2.55
53	E13_Dd	KnownBoundary	0	5.96	2.73	0.00	0.00	0.00	5.71	0.82
54	E13d_E14a	KnownJunction	0	31.44	51.47	1.28	2.25	0.00	66.81	0.89
55	ER13h	ExonRegion	0	8.96	4.51	2.09	1.75	4.84	3.57	1.71
56	E13_De	NovelBoundary	0	15.25	19.70	11.93	20.81	8.55	26.67	6.48
57	I13	Intron	1	5.07	2.29	0.76	0.57	0.00	16.61	0.66
58	I13_SR1	SilentIntronRegion	1	5.07	2.30	0.76	0.57	0.00	16.62	0.66
59	E14_Aa	NovelBoundary	1	6.01	0.00	0.00	0.00	0.00	31.36	0.00
60	ER14a	ExonRegion	0	22.05	41.46	0.97	4.74	0.38	64.22	2.04
61	E14_Da	NovelBoundary	1	11.68	4.33	0.89	1.22	0.00	32.03	0.59
62	E14a_E15a	KnownJunction	0	14.45	29.00	0.00	1.57	0.00	52.31	3.50
63	I14	Intron	0	13.38	10.16	1.83	0.67	0.03	30.02	1.59
64	I14_SR1	SilentIntronRegion	0	14.01	10.64	1.96	0.65	0.00	32.23	1.65
65	E15_Aa	NovelBoundary	0	6.46	25.38	0.69	0.00	0.00	32.62	0.00
66	ER15a	ExonRegion	0	20.50	43.25	0.87	2.71	0.00	57.16	4.82
67	E15_Da	NovelBoundary	0	16.62	18.52	2.10	3.36	0.00	31.97	0.00
68	E15a_E16a	KnownJunction	0	14.79	31.24	0.80	3.93	0.00	50.57	3.25
69	I15	Intron	0	16.68	12.01	2.21	0.53	0.00	24.27	1.79
70	I15_AR1	ActiveIntronRegion	0	16.72	12.05	2.22	0.53	0.00	24.34	1.80
71	E16_Aa	NovelBoundary	0	9.71	13.24	0.69	1.16	0.00	35.40	2.51
72	ER16a	ExonRegion	0	32.44	51.86	1.30	3.92	0.40	72.66	3.94
73	E16_Da	NovelBoundary	0	3.35	5.60	0.00	1.54	0.00	13.53	0.89
74	E16a_E17a	KnownJunction	0	24.75	32.71	0.82	0.00	0.00	52.21	2.19
75	I16_AR1	ActiveIntronRegion	1	4.40	2.45	1.60	1.25	0.00	12.39	0.68
76	ER17a	ExonRegion	0	26.45	40.23	1.16	4.22	0.73	57.24	3.04
77	E17_Da	KnownBoundary	0	6.61	34.36	0.00	2.68	0.00	49.31	0.00
78	ER17b	ExonRegion	0	75.82	67.44	6.58	4.61	1.12	134.07	6.57
79	ER17c	ExonRegion	0	0.77	7.29	0.00	0.83	0.00	12.67	1.35
80	IG39	Intergenic	0	9.21	5.21	2.42	1.86	0.03	41.47	2.09
81	IG39_AR5	ActiveIntergenicRegion	0	6.71	5.89	2.78	1.90	0.00	44.97	2.80
82	IG39_AR4	ActiveIntergenicRegion	0	7.55	3.80	2.00	1.66	0.19	39.41	1.88
83	IG39_SR2	SilentIntergenicRegion	0	13.51	8.42	2.62	2.68	0.00	48.47	3.91
84	IG39_AR3	ActiveIntergenicRegion	0	9.90	6.04	3.20	2.13	0.00	45.44	2.10
85	IG39_SR1	SilentIntergenicRegion	0	9.11	3.41	0.89	1.23	0.00	23.73	1.51
86	IG39_AR2	ActiveIntergenicRegion	0	0.34	2.43	0.05	0.00	0.00	9.49	0.00
87	IG39_AR1	ActiveIntergenicRegion	0	11.58	4.99	2.11	1.83	0.00	40.08	1.72