Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PCDH11X	Gene	0	2.47	1.09	1.93	4.66	22.72	0.93	0.52
2	373081	Transcript	0	0	0	0	0	0	0	0
3	395337	Transcript	0	0	0	0	0	0	0	0
4	361655	Transcript	0	0	0	0	0	0	0	0
5	361724	Transcript	0	0.87	0.53	0.24	0.41	7.09	0.00	0.00
6	373094	Transcript	0	0	0	0	0	0	0	0
7	373097	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	298274	Transcript	0	0	0	0	0	0	0	0
9	406881	Transcript	0	0.00	0.00	0.00	5.53	22.36	0.00	0.00
10	356934	Transcript	0	0	0	0	0	0	0	0
11	218413	Transcript	0	0	0	0	0	0	0	0
12	373088	Transcript	0	0	0	0	0	0	0	0
13	ER1a	ExonRegion	0	0.61	0.00	0.08	3.73	2.71	0.00	0.00
14	E1a_E2a	KnownJunction	0	0.00	0.00	1.52	7.72	5.60	0.00	0.00
15	ER2a	ExonRegion	0	4.02	1.73	2.32	6.43	47.64	0.00	0.00
16	E2a_E3a	KnownJunction	0	3.30	1.31	1.78	9.48	40.39	0.00	0.00
17	ER3a	ExonRegion	0	2.31	1.38	3.40	9.38	52.50	0.00	0.00
18	E3a_E4b	KnownJunction	0	1.64	2.71	4.91	3.12	46.11	0.00	0.00
19	ER4a	ExonRegion	0	0.18	0.12	0.01	0.01	0.28	0.00	0.00
20	E4_Ab	KnownBoundary	0	0.98	0.00	0.00	0.00	0.00	0.00	0.00
21	ER4b	ExonRegion	0	5.01	2.51	4.13	6.49	57.50	0.00	0.00
22	E4_Ac	KnownBoundary	0	4.96	2.39	2.31	7.64	54.45	0.00	0.00
23	ER4c	ExonRegion	0	2.00	1.17	2.45	13.63	43.95	0.34	0.00
24	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER5a	ExonRegion	0	2.68	0.98	2.48	10.09	53.54	0.13	0.00
26	E5_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	E5a_E6a	KnownJunction	0	1.03	1.55	0.89	3.14	41.84	0.00	0.00
28	E5a_E7a	KnownJunction	0	0.00	0.00	1.22	4.85	12.17	1.66	0.00
29	E5a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER5b	ExonRegion	0	0.77	0.00	0.68	0.00	3.71	0.00	0.00
31	E5_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	4.50	0.00	0.00
32	ER5c	ExonRegion	0	0.87	0.53	0.24	0.41	7.09	0.00	0.00
33	E6_Aa	NovelBoundary	0	0.78	0.00	1.48	4.12	17.24	0.00	0.00
34	ER6a	ExonRegion	0	16.08	7.93	10.45	7.46	47.25	8.45	5.47
35	E6_Da	NovelBoundary	0	93.36	53.23	51.76	23.19	15.08	48.21	42.59
36	I6_AR1	ActiveIntronRegion	0	1.58	0.00	0.69	2.30	20.24	0.00	0.00
37	I6_SR2	SilentIntronRegion	0	1.63	0.00	0.73	1.06	27.92	0.00	0.00
38	I6_AR2	ActiveIntronRegion	0	0.68	0.00	0.84	3.06	12.66	0.00	0.00
39	I6_AR3	ActiveIntronRegion	0	1.12	0.19	1.20	3.17	32.64	0.13	0.00
40	I6_SR3	SilentIntronRegion	0	0.48	0.00	0.32	0.77	13.56	0.06	0.00
41	I6_AR5	ActiveIntronRegion	0	0.00	0.00	1.39	1.01	27.93	0.10	0.00
42	I6_SR4	SilentIntronRegion	0	0.38	0.00	0.67	0.00	10.48	0.00	0.00
43	I6_AR6	ActiveIntronRegion	0	0.10	0.00	0.54	1.32	11.71	0.00	0.00
44	ER7a	ExonRegion	0	1.44	0.00	0.64	7.04	10.91	0.50	0.00
45	E7a_E8a	KnownJunction	0	0.00	0.00	0.79	4.36	7.63	0.00	0.00
46	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	4.39	2.97	0.00	0.00
47	E8a_E9a	KnownJunction	0	0.00	0.00	0.89	0.00	1.18	0.00	0.00
48	ER8a	ExonRegion	0	0.00	0.00	1.22	3.03	5.29	0.00	0.00
49	ER9a	ExonRegion	0	0.59	0.00	0.38	6.42	14.08	1.85	0.00
50	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	E9a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.99	0.00	0.00
52	E9a_E13b	KnownJunction	0	0.00	0.00	0.00	5.53	22.36	0.00	0.00
53	E10a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	E11a_E13b	KnownJunction	0	0.00	0.00	0.00	0.00	0.92	0.00	0.00
56	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.71	0.00	0.00
57	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	ER13a	ExonRegion	0	0.00	0.00	0.00	0.83	2.34	0.54	0.00
59	ER13b	ExonRegion	0	0.23	0.00	0.53	3.38	10.92	0.55	0.00
60	E13_Da	KnownBoundary	0	1.82	0.00	0.00	0.00	5.37	0.00	0.00
61	ER13c	ExonRegion	0	0.63	0.00	0.17	0.74	3.65	0.00	0.00
62	E13_Db	KnownBoundary	0	0.00	0.00	0.89	0.00	2.84	0.00	0.00
63	ER13d	ExonRegion	0	0.22	0.00	0.47	1.37	6.03	0.04	0.00
64	ER13e	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00