Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DMD	Gene	0	35.09	16.75	100.50	59.71	9.11	6.96	12.87
2	288447	Transcript	0	0.06	0.00	2.67	0.94	0.01	0.00	0.00
3	357033	Transcript	0	10.39	5.38	37.44	21.15	2.25	2.12	1.86
4	378677	Transcript	0	0.41	0.03	0.75	1.11	0.00	0.00	0.06
5	378687	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	378682	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	378684	Transcript	0	0.00	0.87	1.67	1.09	0.00	0.00	0.11
8	359836	Transcript	0	0	0	0	0	0	0	0
9	358062	Transcript	0	0	0	0	0	0	0	0
10	343523	Transcript	0	1.03	7.25	1.22	0.00	1.15	7.08	0.00
11	378707	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	378705	Transcript	0	0.62	0.00	0.29	0.00	0.00	0.00	0.00
13	378680	Transcript	0	8.00	9.85	8.03	18.90	1.75	4.83	6.23
14	361471	Transcript	0	0	0	0	0	0	0	0
15	378702	Transcript	0	0	0	0	0	0	0	0
16	378723	Transcript	0	0	0	0	0	0	0	0
17	ER1a	ExonRegion	0	0.00	0.00	5.63	1.23	0.00	0.00	0.00
18	E1a_E5c	KnownJunction	0	0.00	0.00	1.77	1.60	0.00	0.00	0.00
19	ER2a	ExonRegion	1	6.55	7.79	40.19	26.64	0.00	3.20	1.85
20	E2a_E5c	KnownJunction	1	20.53	8.35	65.28	32.10	0.00	3.03	1.49
21	ER3a	ExonRegion	0	1.03	0.00	1.28	2.34	0.00	0.00	0.00
22	E3a_E5c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER5b	ExonRegion	0	4.00	1.70	15.31	6.73	0.00	0.49	0.54
26	ER5c	ExonRegion	1	15.62	10.36	88.55	38.88	0.00	3.36	1.94
27	E5a_E6a	KnownJunction	1	8.56	11.32	81.52	39.23	0.00	3.27	1.28
28	ER6a	ExonRegion	1	11.32	17.66	81.06	47.71	0.00	5.72	1.25
29	E6a_E7a	KnownJunction	1	21.15	17.73	91.90	45.78	0.00	5.74	0.00
30	ER7a	ExonRegion	1	16.68	18.64	105.38	55.97	0.00	3.46	1.50
31	E7a_E8a	KnownJunction	1	10.63	18.21	99.39	68.16	0.00	1.47	4.16
32	ER8a	ExonRegion	1	12.75	21.21	95.90	68.62	0.00	3.88	2.42
33	E8a_E9a	KnownJunction	1	6.94	23.01	100.69	57.14	0.00	2.68	0.89
34	ER9a	ExonRegion	1	14.50	16.01	103.46	66.72	0.00	2.79	1.99
35	E9a_E10a	KnownJunction	1	7.89	7.25	87.46	72.36	0.00	7.93	1.45
36	ER10a	ExonRegion	1	13.82	13.49	98.65	74.91	0.00	4.34	1.71
37	E10a_E11a	KnownJunction	1	14.79	15.03	98.93	107.12	0.00	5.36	2.98
38	ER11a	ExonRegion	1	15.54	28.98	108.60	92.54	0.87	3.43	4.80
39	E11a_E12a	KnownJunction	1	15.30	16.10	114.30	75.91	3.69	0.00	3.83
40	E11a_E13a	NovelJunction	0	0.00	9.62	3.77	12.79	0.00	0.00	2.02
41	ER12a	ExonRegion	1	11.82	16.15	102.38	63.50	1.01	0.04	2.69
42	E12a_E13a	KnownJunction	1	3.81	8.98	75.54	47.06	0.00	0.00	0.64
43	ER13a	ExonRegion	1	12.14	16.63	101.28	61.10	1.52	1.66	2.02
44	E13a_E14a	KnownJunction	1	8.81	18.71	105.41	62.07	0.00	2.95	3.07
45	ER14a	ExonRegion	1	20.67	19.73	132.07	69.13	0.35	2.38	1.30
46	E14a_E15a	KnownJunction	1	27.07	19.78	164.32	76.61	2.01	5.60	1.25
47	ER15a	ExonRegion	1	31.91	27.54	178.66	86.37	1.10	6.68	3.19
48	E15a_E16a	KnownJunction	1	19.11	18.44	125.77	60.95	1.18	6.97	4.06
49	ER16a	ExonRegion	1	19.65	18.03	124.60	56.34	1.20	6.74	4.50
50	E16a_E17a	KnownJunction	1	18.51	14.13	109.30	52.31	0.00	5.25	4.34
51	ER17a	ExonRegion	1	12.81	17.57	126.40	58.42	0.66	1.68	2.65
52	E17a_E18a	KnownJunction	1	12.97	19.05	131.07	76.80	1.15	1.55	3.44
53	ER18a	ExonRegion	1	19.86	16.60	137.94	53.11	0.52	1.38	2.80
54	E18a_E19a	KnownJunction	1	18.89	13.66	162.40	50.77	0.00	0.00	2.34
55	ER19a	ExonRegion	1	14.11	10.85	112.07	55.61	0.69	3.73	3.03
56	E19a_E20a	KnownJunction	1	16.61	3.99	98.67	57.51	0.00	6.35	2.04
57	ER20a	ExonRegion	1	13.62	8.26	92.90	60.43	0.60	2.54	3.85
58	E20_Da	KnownBoundary	0	0.00	1.10	0.00	1.49	0.00	0.00	0.00
59	E20a_E21a	KnownJunction	1	16.46	6.02	94.11	57.49	1.18	0.00	1.58
60	ER20b	ExonRegion	0	0.20	0.09	0.97	1.01	0.00	0.00	0.18
61	ER21a	ExonRegion	1	14.97	4.67	93.33	59.54	0.48	0.00	3.10
62	E21_Da	KnownBoundary	0	0.00	0.00	0.89	0.00	0.00	0.00	0.00
63	E21a_E22a	KnownJunction	1	15.79	4.20	87.99	42.75	0.00	1.61	3.18
64	ER21b	ExonRegion	0	0.17	0.00	0.61	0.00	0.03	0.00	0.00
65	ER22a	ExonRegion	1	15.73	5.20	106.21	59.66	1.04	0.71	4.89
66	E22a_E23a	KnownJunction	1	16.87	6.23	97.32	63.61	3.37	1.50	3.58
67	ER23a	ExonRegion	1	15.32	11.72	93.00	52.92	0.54	1.65	2.95
68	E23a_E24a	KnownJunction	1	16.94	9.30	81.24	37.82	1.15	1.02	1.15
69	ER24a	ExonRegion	1	11.00	11.16	82.24	61.06	1.06	0.89	3.26
70	E24a_E25a	KnownJunction	1	9.95	21.02	84.02	66.10	0.00	1.37	4.97
71	ER25a	ExonRegion	1	9.08	16.45	76.12	73.66	0.47	2.05	1.94
72	E25a_E26a	KnownJunction	1	8.83	6.20	71.36	55.08	1.11	4.48	0.79
73	ER26a	ExonRegion	1	15.53	13.83	93.76	56.84	0.46	2.15	2.46
74	E26a_E27a	KnownJunction	1	20.36	22.28	105.25	67.08	0.00	4.23	3.43
75	E27_Aa	NovelBoundary	1	6.58	0.00	42.55	0.00	0.00	0.00	0.00
76	ER27a	ExonRegion	1	15.45	22.44	91.70	53.16	0.70	2.32	1.10
77	E27a_E28a	KnownJunction	1	8.93	21.60	72.15	52.50	0.00	1.45	0.85
78	ER28a	ExonRegion	1	9.74	16.19	81.75	55.31	0.19	1.46	0.66
79	E28a_E29a	KnownJunction	1	7.88	14.11	100.43	61.61	1.04	4.72	0.00
80	ER29a	ExonRegion	1	10.79	16.75	113.42	54.31	0.07	5.18	0.80
81	E29a_E30a	KnownJunction	1	13.25	19.07	114.09	59.28	0.00	4.42	0.72
82	ER30a	ExonRegion	1	11.52	13.32	109.06	57.60	0.64	2.20	1.47
83	E30a_E31a	KnownJunction	1	19.36	12.11	120.50	71.66	4.63	0.00	1.40
84	ER31a	ExonRegion	1	16.11	14.26	125.96	68.35	1.58	1.83	2.19
85	E31a_E32a	KnownJunction	1	15.74	17.39	111.99	70.11	0.00	3.70	3.07
86	ER32a	ExonRegion	1	18.10	11.38	107.80	53.63	1.65	5.19	2.01
87	E32a_E34a	KnownJunction	1	18.54	12.66	99.95	45.76	0.00	5.68	1.38
88	ER33a	ExonRegion	0	0.00	0.77	0.95	0.07	0.00	0.00	0.22
89	E33a_E34a	KnownJunction	0	0.00	0.97	2.40	2.11	0.00	0.00	0.00
90	ER34a	ExonRegion	1	17.00	9.88	117.19	71.77	0.51	5.09	2.92
91	E34a_E35a	KnownJunction	1	19.09	6.17	117.25	45.51	0.00	4.21	4.67
92	ER35a	ExonRegion	1	17.57	8.35	117.08	62.02	1.04	3.90	2.92
93	E35a_E36a	KnownJunction	1	17.86	13.14	142.57	54.29	1.80	4.31	0.63
94	ER36a	ExonRegion	1	18.65	16.07	128.39	75.79	1.20	3.95	3.29
95	E36a_E37a	KnownJunction	1	21.38	12.24	98.68	74.26	1.91	3.81	2.55
96	ER37a	ExonRegion	1	15.12	13.93	112.24	73.79	0.80	3.89	3.11
97	E37a_E38a	KnownJunction	1	13.92	9.80	97.23	75.88	0.85	2.87	4.00
98	ER38a	ExonRegion	1	11.44	13.04	114.69	68.39	0.51	1.95	2.85
99	E38a_E39a	KnownJunction	1	5.69	13.27	82.30	43.97	0.00	2.87	1.59
100	ER39a	ExonRegion	1	11.50	19.77	115.75	62.07	0.97	2.55	1.07
101	E39a_E40a	KnownJunction	1	6.21	21.96	114.95	49.12	0.99	0.99	2.02
102	ER40a	ExonRegion	1	12.59	20.15	119.63	57.90	0.89	2.95	1.44
103	E40a_E41a	KnownJunction	1	12.85	12.64	103.15	43.86	0.00	0.00	1.65
104	E40a_E42a	NovelJunction	1	0.00	0.00	2.10	11.03	0.00	1.34	0.00
105	ER41a	ExonRegion	1	15.98	10.00	122.43	57.28	0.72	1.63	1.72
106	E41a_E42a	KnownJunction	1	16.22	6.80	106.14	51.01	0.00	0.00	1.95
107	E41a_E43a	NovelJunction	1	6.79	3.55	24.63	18.91	0.00	0.00	0.00
108	ER42a	ExonRegion	1	11.65	6.83	93.13	44.06	0.34	1.53	0.53
109	E42a_E43a	KnownJunction	1	8.85	4.10	75.86	34.43	0.00	5.55	1.71
110	ER43a	ExonRegion	1	12.37	6.63	94.49	40.74	0.65	3.44	1.60
111	E43a_E44a	KnownJunction	1	15.02	10.22	104.76	37.47	0.92	6.22	3.74
112	ER44a	ExonRegion	1	9.67	8.17	90.80	37.46	0.49	2.33	1.75
113	E44a_E45a	KnownJunction	1	9.78	5.73	80.93	39.91	0.00	0.00	2.59
114	ER45a	ExonRegion	1	11.16	10.70	95.63	45.29	0.00	2.73	0.74
115	E45a_E46a	KnownJunction	1	12.93	15.16	134.12	68.16	0.00	1.61	0.00
116	ER46a	ExonRegion	1	10.24	13.10	109.88	53.79	0.00	2.12	0.71
117	E46a_E47a	KnownJunction	1	7.89	5.52	119.47	63.31	0.00	1.31	0.77
118	ER47a	ExonRegion	1	8.74	9.92	102.83	62.97	0.00	1.89	0.09
119	E47a_E48a	KnownJunction	1	9.11	13.06	120.90	70.57	0.00	3.16	0.00
120	ER48a	ExonRegion	1	8.56	9.64	100.96	54.06	0.00	0.50	0.35
121	E48a_E50a	KnownJunction	1	7.54	5.46	72.80	37.33	0.00	0.00	0.00
122	ER49a	ExonRegion	0	0.00	0.00	0.00	1.89	1.25	0.00	0.00
123	E49a_E50a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
124	ER50a	ExonRegion	1	6.82	4.52	81.50	39.70	1.78	3.04	0.00
125	E50a_E51a	KnownJunction	1	9.46	1.63	75.40	33.13	3.43	1.15	0.00
126	ER51a	ExonRegion	1	9.12	3.43	90.01	37.89	0.67	2.02	0.00
127	E51a_E52a	KnownJunction	1	7.69	3.42	77.33	36.57	0.00	0.00	0.00
128	ER52a	ExonRegion	1	9.90	2.45	103.22	39.60	2.13	1.56	0.00
129	E52a_E54a	KnownJunction	1	6.19	2.05	95.88	52.53	1.73	1.66	0.00
130	ER53a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
131	ER54a	ExonRegion	1	8.71	5.12	106.53	55.07	2.34	3.18	0.00
132	E54a_E55a	KnownJunction	1	10.77	5.81	100.75	59.98	5.56	4.29	0.00
133	ER55a	ExonRegion	1	10.16	9.30	121.60	55.17	3.92	5.96	0.00
134	E55a_E56a	KnownJunction	1	7.31	6.65	99.95	48.49	0.00	1.63	0.00
135	ER56a	ExonRegion	1	7.44	11.51	106.75	54.57	2.55	3.61	0.00
136	E56a_E57a	KnownJunction	1	7.41	10.59	103.21	29.10	3.50	1.61	0.00
137	ER57a	ExonRegion	1	8.49	9.27	84.51	45.78	3.36	2.65	0.00
138	E57a_E58a	KnownJunction	1	7.23	10.27	74.08	39.96	3.20	4.18	0.00
139	ER58a	ExonRegion	1	7.43	7.90	76.30	41.24	2.10	3.87	0.00
140	E58a_E59a	KnownJunction	1	6.68	11.74	75.23	37.66	5.23	3.27	0.00
141	ER59a	ExonRegion	1	4.49	10.63	78.24	41.16	2.27	3.31	0.00
142	E59a_E60a	KnownJunction	1	6.46	11.17	79.87	43.24	4.52	2.92	0.00
143	ER60a	ExonRegion	1	8.80	8.14	93.04	50.22	2.66	1.37	0.00
144	E60a_E61a	KnownJunction	1	10.16	4.15	102.42	46.43	2.07	0.00	0.00
145	ER61a	ExonRegion	1	8.78	8.89	100.69	44.43	2.96	0.00	0.00
146	E61a_E63a	KnownJunction	1	9.45	5.54	111.72	39.66	3.23	0.00	0.00
147	ER62a	ExonRegion	0	0.56	0.00	0.57	0.00	0.00	0.00	0.00
148	E62a_E63a	KnownJunction	0	0.68	0.00	0.00	0.00	0.00	0.00	0.00
149	ER63a	ExonRegion	1	9.14	10.76	121.15	43.58	3.16	1.80	0.00
150	E63a_E64a	KnownJunction	1	12.50	10.38	121.89	36.65	3.69	1.53	0.00
151	ER64a	ExonRegion	1	9.57	12.36	116.16	66.90	2.71	2.63	0.00
152	E64a_E65a	KnownJunction	1	6.94	8.80	118.51	68.22	3.16	3.03	0.00
153	ER65a	ExonRegion	1	5.39	7.77	94.38	55.35	2.74	1.71	0.00
154	E65a_E66a	KnownJunction	1	4.42	8.14	69.61	44.10	2.24	0.00	0.00
155	ER66a	ExonRegion	1	5.50	8.65	80.30	50.93	2.06	1.32	0.38
156	E66a_E67a	KnownJunction	1	7.74	8.17	92.70	52.69	1.01	1.66	0.00
157	ER67a	ExonRegion	1	5.74	9.78	71.12	64.27	3.19	5.18	0.00
158	E67a_E68a	KnownJunction	1	6.53	3.78	74.17	51.61	1.78	6.14	0.00
159	ER68a	ExonRegion	1	6.07	7.32	74.51	52.37	2.53	2.75	0.00
160	E68a_E69a	KnownJunction	1	3.14	10.01	67.76	57.65	2.95	1.47	0.00
161	ER69a	ExonRegion	1	6.00	6.37	74.62	52.07	4.01	1.73	0.00
162	E69a_E71a	KnownJunction	1	8.91	5.46	76.32	40.88	5.67	1.63	0.00
163	ER70a	ExonRegion	0	14.77	19.12	13.73	37.50	3.47	9.51	11.82
164	E70a_E71a	KnownJunction	0	11.33	33.68	17.86	46.92	3.11	9.00	14.10
165	ER70b	ExonRegion	1	10.68	29.16	19.25	43.64	2.22	9.23	11.18
166	ER71a	ExonRegion	0	40.81	44.48	122.25	126.06	9.71	16.91	21.59
167	E71a_E72a	KnownJunction	0	62.67	46.42	133.70	161.63	15.86	30.42	32.48
168	ER72a	ExonRegion	1	72.82	67.87	176.25	195.62	23.58	29.06	59.76
169	E72a_E73a	KnownJunction	1	69.13	92.45	183.95	190.80	30.61	27.50	64.15
170	ER73a	ExonRegion	1	117.72	75.74	222.04	232.19	29.62	33.01	70.04
171	E73a_E74a	KnownJunction	1	123.71	60.42	208.67	210.17	31.24	48.88	75.73
172	ER74a	ExonRegion	0	180.09	84.60	277.22	240.32	38.42	42.88	76.15
173	E74a_E75a	KnownJunction	0	196.71	100.54	290.07	257.77	39.97	48.80	75.76
174	ER75a	ExonRegion	1	150.57	91.01	210.85	194.33	33.33	31.29	68.28
175	E75a_E76a	KnownJunction	1	104.80	69.88	162.27	138.73	30.61	29.51	58.53
176	E75a_E77a	NovelJunction	1	14.14	10.51	30.24	23.84	1.18	0.00	0.00
177	ER76a	ExonRegion	1	92.08	61.11	140.18	98.39	28.98	20.50	48.01
178	E76_Da	KnownBoundary	0	0.68	0.00	1.37	3.14	0.00	0.00	0.00
179	E76a_E77a	KnownJunction	0	165.20	76.69	278.90	137.89	33.43	32.48	76.76
180	ER76b	ExonRegion	0	1.24	0.57	2.32	0.31	0.03	0.14	0.63
181	E77_Aa	NovelBoundary	1	67.04	0.00	112.46	0.00	0.00	0.00	0.00
182	ER77a	ExonRegion	0	236.90	79.00	341.55	178.88	55.16	24.04	85.66
183	E77a_E78a	KnownJunction	0	262.12	68.41	397.97	195.79	67.45	29.10	89.70
184	ER78a	ExonRegion	0	217.28	64.76	333.71	187.65	58.94	29.50	82.75
185	E78a_E79a	KnownJunction	0	96.28	28.11	152.37	59.46	45.85	3.22	38.77
186	E78a_E80a	KnownJunction	1	67.56	18.39	93.71	80.57	7.45	19.22	27.86
187	E78a_E83a	KnownJunction	0	1.03	7.25	1.22	0.00	1.15	7.08	0.00
188	ER79a	ExonRegion	1	103.29	40.21	164.74	77.31	46.41	6.98	54.90
189	E79a_E80a	KnownJunction	1	76.94	36.73	125.41	69.33	42.07	8.04	49.43
190	ER80a	ExonRegion	1	119.14	62.03	193.06	190.92	34.69	23.96	78.73
191	E80a_E81a	KnownJunction	1	102.68	66.47	178.61	214.45	46.61	25.97	62.71
192	E80a_E82a	NovelJunction	1	12.80	1.18	10.98	11.00	0.95	0.00	0.85
193	ER81a	ExonRegion	1	139.95	83.44	249.70	196.85	63.35	35.81	82.17
194	E81a_E82a	KnownJunction	1	172.54	84.36	281.08	205.57	74.85	38.43	99.99
195	ER82a	ExonRegion	1	172.74	91.05	256.35	216.22	49.46	41.02	71.65
196	E82a_E83a	KnownJunction	0	222.04	105.19	277.94	283.43	57.61	47.92	71.70
197	ER83a	ExonRegion	0	135.61	71.60	185.59	199.39	41.53	35.53	50.19
198	E83a_E84a	KnownJunction	1	75.24	58.56	130.63	169.75	32.50	25.51	36.70
199	ER84a	ExonRegion	1	72.82	65.81	137.17	189.12	35.13	28.87	46.20
200	E84a_E85a	KnownJunction	1	78.78	59.58	153.29	192.27	33.54	26.48	61.74
201	ER85a	ExonRegion	1	75.54	66.48	146.53	180.85	32.51	33.75	54.00
202	E85a_E86a	KnownJunction	0	11.87	10.96	29.76	33.46	0.00	7.29	6.12
203	E85a_E87a	KnownJunction	1	72.13	52.20	129.05	127.49	35.29	21.31	51.74
204	ER86a	ExonRegion	0	11.65	11.12	36.39	31.02	0.00	8.24	5.71
205	E86_Da	NovelBoundary	1	16.81	2.50	6.51	3.14	0.00	2.55	1.46
206	I86_SR2	SilentIntronRegion	0	11.45	2.32	19.60	4.80	0.48	2.40	1.78
207	ER87a	ExonRegion	0	110.02	23.35	195.99	89.09	32.96	17.83	40.70
208	ER87b	ExonRegion	0	4.10	0.00	6.85	4.71	6.75	0.14	2.25
209	ER88a	ExonRegion	0	0.51	0.67	0.00	1.39	0.00	0.00	0.30