Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CA5BL	Gene	0	66.13	89.27	75.92	110.78	49.70	186.34	101.84
2	380336	Transcript	0	21.90	25.41	18.65	34.07	16.73	34.16	27.14
3	380334	Transcript	0	0.37	0.31	0.70	1.48	0.15	0.27	0.47
4	380333	Transcript	0	53.45	50.31	71.35	81.34	51.16	103.30	94.93
5	380331	Transcript	0	1.35	5.69	0.72	2.82	1.82	10.70	0.84
6	334569	Transcript	0	0.00	0.00	0.52	0.00	0.00	0.00	0.00
7	ER1a	ExonRegion	0	1.12	0.26	0.00	0.00	0.70	0.00	1.11
8	E1a_E6a	KnownJunction	0	3.74	1.02	1.22	1.11	1.15	0.00	3.96
9	I1_SR1	SilentIntronRegion	1	4.86	7.50	4.48	24.67	1.50	11.58	5.83
10	I1_AR3	ActiveIntronRegion	0	11.58	17.57	6.78	20.21	13.03	7.38	17.47
11	ER2a	ExonRegion	0	0.37	0.31	0.70	1.48	0.15	0.27	0.47
12	I2	Intron	1	13.77	25.86	7.41	21.29	7.51	11.04	13.65
13	I2_AR1	ActiveIntronRegion	1	13.94	26.21	7.49	21.55	7.60	11.14	13.83
14	E3_Aa	NovelBoundary	1	20.41	47.53	34.56	67.75	9.41	35.99	48.77
15	ER3a	ExonRegion	0	36.57	38.38	53.04	59.21	54.65	72.41	76.14
16	E3a_E5a	NovelJunction	0	13.44	27.40	10.75	41.91	5.51	74.93	3.31
17	E3a_E6a	KnownJunction	0	70.33	62.24	89.67	103.46	47.67	134.19	113.71
18	ER4a	ExonRegion	0	4.42	2.87	0.54	2.93	1.26	5.26	1.10
19	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	4.18	0.00
20	ER5a	ExonRegion	0	0.25	4.81	0.88	1.27	1.69	11.58	0.63
21	E5a_E6a	KnownJunction	0	0.75	15.08	1.47	7.10	4.33	21.79	1.63
22	I5_AR2	ActiveIntronRegion	1	18.65	7.49	7.76	7.49	4.65	4.53	4.49
23	ER6a	ExonRegion	0	90.64	99.39	107.92	124.11	39.78	248.92	109.34
24	E6a_E7a	KnownJunction	0	68.55	110.13	97.62	119.53	30.98	274.40	79.25
25	E6a_E8a	NovelJunction	1	19.33	7.28	9.87	8.48	11.48	9.25	3.58
26	E6a_E9a	NovelJunction	0	15.07	14.06	21.70	22.59	13.23	52.10	26.30
27	E7_Aa	NovelBoundary	1	50.49	6.57	58.99	3.31	1.18	7.56	6.82
28	ER7a	ExonRegion	0	121.77	141.23	155.45	160.74	64.86	378.79	120.22
29	E7a_E8a	KnownJunction	0	86.54	60.58	75.63	76.88	41.03	144.16	61.27
30	E7a_E9a	KnownJunction	1	42.91	39.54	77.79	61.55	11.76	136.44	41.69
31	E8_Aa	NovelBoundary	0	44.46	30.00	42.44	39.31	21.74	56.04	36.20
32	ER8a	ExonRegion	0	88.34	70.99	79.63	82.62	58.25	119.37	76.43
33	E8_Da	KnownBoundary	0	70.72	82.23	77.11	77.64	61.94	118.11	88.71
34	ER8b	ExonRegion	0	60.84	74.94	54.72	101.10	48.35	102.47	76.36
35	E8_Db	NovelBoundary	0	52.11	60.74	45.08	82.19	42.88	102.46	83.82
36	I8	Intron	1	59.99	46.41	52.53	50.06	72.09	52.82	81.57
37	I8_AR1	ActiveIntronRegion	0	57.75	38.84	48.99	38.90	37.92	42.37	61.57
38	I8_SR1	SilentIntronRegion	0	27.56	6.23	26.05	9.90	18.80	16.06	24.92
39	I8_AR2	ActiveIntronRegion	1	67.36	51.38	59.18	57.31	92.85	59.51	93.77
40	I8_AR3	ActiveIntronRegion	1	36.20	57.30	33.40	55.19	55.12	57.73	86.71
41	E9_Aa	NovelBoundary	1	49.57	64.26	50.94	72.66	65.98	96.32	125.56
42	ER9a	ExonRegion	0	82.41	130.19	115.25	147.05	51.97	270.75	130.12
43	E9_Ab	KnownBoundary	0	66.18	118.33	107.15	139.79	84.83	254.97	144.70
44	ER9b	ExonRegion	0	88.33	135.90	131.39	169.09	95.39	320.11	205.84
45	E9_Da	KnownBoundary	1	72.10	88.17	92.19	124.10	119.44	252.45	161.97
46	E9a_E9c	KnownJunction	0	0.00	0.00	0.52	0.00	0.00	0.00	0.00
47	ER9c	ExonRegion	0	100.35	139.33	129.87	177.68	109.33	360.79	214.40
48	E9_Ac	KnownBoundary	0	84.28	122.37	108.60	168.21	107.75	319.02	176.16
49	ER9d	ExonRegion	0	68.31	144.05	81.64	176.45	56.81	305.76	169.73
50	E9_Db	KnownBoundary	0	72.67	141.73	84.67	171.81	60.68	291.37	158.76
51	ER9e	ExonRegion	0	45.68	99.70	64.65	133.58	66.67	215.66	136.00