Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	EHMT1	Gene	0	65.00	71.10	78.26	69.81	192.78	56.19	78.04
2	358074	Transcript	0	0.80	7.71	1.50	0.58	0.96	0.11	1.61
3	334856	Transcript	0	0	0	0	0	0	0	0
4	371400	Transcript	0	0.85	0.85	0.47	0.12	0.32	0.12	0.07
5	298728	Transcript	0	78.11	72.00	75.46	73.20	172.15	69.64	80.14
6	371394	Transcript	0	2.73	5.96	4.03	3.61	8.04	4.75	4.85
7	IG44	Intergenic	0	4.48	1.50	2.90	0.60	3.88	0.38	8.11
8	IG44_AR1	ActiveIntergenicRegion	0	3.84	1.62	2.57	2.37	5.05	0.00	9.89
9	IG44_SR1	SilentIntergenicRegion	0	2.73	0.84	2.42	2.58	3.23	0.00	8.01
10	IG44_AR2	ActiveIntergenicRegion	0	11.64	2.50	4.05	2.38	8.37	0.36	10.72
11	IG44_SR2	SilentIntergenicRegion	0	3.64	1.70	2.26	0.40	4.94	0.39	8.18
12	IG44_SR3	SilentIntergenicRegion	0	4.59	1.63	3.12	0.51	4.51	0.32	8.68
13	IG44_AR4	ActiveIntergenicRegion	0	6.92	1.49	5.47	0.19	3.89	0.00	8.22
14	IG44_SR4	SilentIntergenicRegion	0	8.70	2.03	3.90	0.73	5.68	0.16	7.36
15	IG44_AR7	ActiveIntergenicRegion	0	7.76	2.49	4.03	0.43	7.56	0.00	7.26
16	IG44_SR5	SilentIntergenicRegion	0	4.97	2.38	2.79	0.60	3.70	0.82	9.04
17	IG44_AR8	ActiveIntergenicRegion	0	7.35	0.94	5.34	0.95	4.72	0.28	12.14
18	IG44_SR6	SilentIntergenicRegion	0	3.52	2.99	3.73	0.64	4.27	0.91	9.72
19	IG44_AR9	ActiveIntergenicRegion	0	4.08	1.99	3.26	0.98	3.12	0.43	8.84
20	IG44_AR11	ActiveIntergenicRegion	0	4.54	1.56	3.01	0.00	2.65	0.32	7.81
21	ER1a	ExonRegion	0	0.00	0.20	0.11	0.21	1.35	0.00	0.67
22	ER2a	ExonRegion	0	0.26	0.40	0.68	0.42	4.86	0.00	1.35
23	ER2b	ExonRegion	0	5.73	12.17	8.16	6.97	35.50	9.55	11.82
24	E2a_E3b	KnownJunction	0	13.25	25.48	16.37	16.28	39.56	17.45	20.61
25	ER3a	ExonRegion	0	3.33	10.12	4.29	5.40	14.58	6.95	6.07
26	ER3b	ExonRegion	0	90.73	111.85	109.39	94.59	186.39	79.18	74.29
27	E3a_E4a	KnownJunction	0	69.16	102.83	79.48	90.46	130.55	55.66	67.56
28	ER4a	ExonRegion	0	78.32	111.24	124.12	86.09	200.11	67.82	88.87
29	E4a_E5a	KnownJunction	0	23.92	30.53	55.93	27.82	94.54	38.62	46.82
30	ER5a	ExonRegion	0	75.73	73.14	115.35	72.88	203.48	53.64	81.92
31	E5a_E6a	KnownJunction	0	55.88	75.37	97.96	68.81	186.59	64.29	75.50
32	ER6a	ExonRegion	0	60.02	78.50	70.51	63.60	166.16	42.62	72.32
33	E6a_E7a	KnownJunction	0	46.01	52.70	58.99	41.72	150.54	37.47	51.23
34	E6a_E8a	NovelJunction	1	31.39	15.66	40.02	30.56	48.62	14.23	14.72
35	ER7a	ExonRegion	0	54.20	64.12	59.57	51.25	159.09	45.00	54.81
36	E7a_E8a	KnownJunction	0	75.94	66.68	58.56	59.22	182.60	47.52	59.73
37	ER8a	ExonRegion	0	86.87	88.06	96.09	83.36	197.62	52.78	75.47
38	E8a_E9a	KnownJunction	0	116.45	97.05	126.32	88.91	224.67	73.54	95.55
39	ER9a	ExonRegion	0	91.96	97.97	99.87	89.52	252.10	54.71	107.15
40	E9a_E10a	KnownJunction	0	71.93	108.13	87.52	80.73	236.31	50.44	107.82
41	ER10a	ExonRegion	0	74.53	105.76	94.18	86.19	261.41	55.43	120.35
42	E10a_E11a	KnownJunction	0	78.81	107.69	88.29	79.51	267.74	72.28	117.30
43	E10a_E12a	NovelJunction	0	1.79	4.26	8.61	10.70	17.96	13.08	9.85
44	ER11a	ExonRegion	0	63.89	104.19	82.57	92.27	247.49	61.05	123.83
45	E11a_E12a	KnownJunction	0	69.31	111.71	93.15	103.19	195.86	50.09	110.37
46	ER12a	ExonRegion	0	53.62	78.43	78.83	79.84	219.72	54.99	101.44
47	E12_Da	NovelBoundary	1	36.33	14.13	20.72	11.35	5.46	1.66	2.44
48	E12a_E13a	KnownJunction	0	39.99	71.75	60.28	65.10	206.05	36.37	100.43
49	Ix	Intron	0	24.87	7.63	21.31	5.48	7.44	2.80	2.70
50	Ix_SR1	SilentIntronRegion	0	25.15	7.71	21.54	5.55	7.53	2.83	2.73
51	E13_Aa	NovelBoundary	1	24.10	6.15	19.31	7.61	3.04	1.66	3.57
52	ER13a	ExonRegion	0	60.57	76.03	88.20	57.94	198.07	57.15	83.09
53	E13_Da	NovelBoundary	1	16.82	1.63	21.44	0.00	8.78	1.07	1.52
54	E13a_E14a	KnownJunction	0	48.15	86.77	81.59	52.18	202.61	48.91	76.34
55	Ix	Intron	0	16.82	5.42	11.52	6.58	5.78	2.79	2.14
56	Ix_SR1	SilentIntronRegion	0	21.59	6.11	14.34	8.54	6.80	3.50	2.45
57	ER14a	ExonRegion	0	70.42	87.85	119.92	69.97	227.30	83.15	117.39
58	E14a_E15a	KnownJunction	0	84.03	109.08	138.36	75.10	349.00	87.55	125.49
59	ER15a	ExonRegion	0	67.41	98.70	86.10	88.91	220.23	72.55	90.85
60	E15a_E16a	KnownJunction	1	1.70	16.08	3.61	1.27	1.15	0.00	3.35
61	E15a_E17a	KnownJunction	0	58.83	79.02	93.12	81.30	258.35	60.49	99.45
62	E15a_E19a	NovelJunction	0	3.52	8.59	0.55	3.82	6.36	0.00	2.35
63	E16_Aa	NovelBoundary	0	28.52	20.12	25.06	18.83	1.06	21.84	24.71
64	ER16a	ExonRegion	0	0.69	6.85	0.77	0.26	0.37	0.33	0.82
65	ER17a	ExonRegion	0	67.65	85.57	117.01	97.42	289.68	73.42	118.55
66	E17a_E18a	KnownJunction	0	0.00	2.84	3.58	2.68	0.00	1.31	1.48
67	E17a_E19a	KnownJunction	0	75.04	74.37	101.81	90.65	304.21	78.90	114.55
68	ER18a	ExonRegion	0	1.33	3.90	2.17	2.99	0.71	2.25	2.95
69	E18_Da	KnownBoundary	0	4.31	4.26	1.39	2.74	0.90	3.97	4.94
70	ER18b	ExonRegion	0	2.12	1.80	3.76	1.81	1.50	2.55	3.62
71	ER19a	ExonRegion	0	92.18	108.62	112.01	128.13	380.30	79.99	146.98
72	E19a_E20a	KnownJunction	0	89.26	99.36	136.92	131.12	419.08	83.94	164.44
73	ER20a	ExonRegion	0	75.29	103.19	122.13	132.02	340.58	80.85	151.37
74	E20a_E21a	KnownJunction	0	67.46	91.50	86.71	95.50	313.86	59.17	120.44
75	E20a_E22a	NovelJunction	0	4.29	8.17	5.99	8.07	5.35	2.65	7.72
76	ER21a	ExonRegion	0	58.67	78.25	70.93	79.44	298.32	53.30	118.29
77	E21a_E22a	KnownJunction	0	55.53	62.29	77.93	66.64	267.48	49.87	108.86
78	ER22a	ExonRegion	0	61.96	82.10	83.44	82.40	237.54	57.01	109.50
79	E22a_E23a	KnownJunction	0	70.26	78.08	66.18	98.91	318.71	61.05	151.90
80	E23_Aa	NovelBoundary	1	28.24	0.00	25.59	1.49	0.00	0.00	2.21
81	ER23a	ExonRegion	0	71.41	97.57	110.32	106.24	340.37	70.40	157.94
82	E23a_E24a	KnownJunction	0	63.61	94.16	103.74	99.26	413.18	49.87	132.41
83	ER24a	ExonRegion	0	69.15	83.08	79.44	107.03	348.59	61.74	147.99
84	E24a_E25a	KnownJunction	0	56.11	65.70	61.66	89.10	293.07	59.12	109.23
85	E25_Aa	NovelBoundary	1	17.02	8.43	21.97	11.65	6.66	0.00	3.68
86	ER25a	ExonRegion	0	81.75	77.10	97.88	86.38	365.88	65.92	123.01
87	E25a_E26a	KnownJunction	0	115.74	83.81	128.50	101.16	482.98	62.07	147.80
88	E26_Aa	NovelBoundary	1	54.83	0.00	49.43	1.22	5.07	0.00	2.89
89	ER26a	ExonRegion	0	107.20	79.61	115.63	93.72	377.14	73.50	123.99
90	E26a_E27a	KnownJunction	0	116.20	87.25	109.89	102.84	346.76	71.42	120.47
91	ER27a	ExonRegion	0	127.50	103.05	124.30	94.31	267.36	78.59	129.46
92	E27a_E29a	KnownJunction	0	117.98	110.39	106.04	109.77	163.10	86.67	117.78
93	ER27b	ExonRegion	0	1.69	1.70	0.95	0.25	0.65	0.25	0.13
94	ER28a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
95	ER29a	ExonRegion	0	92.52	70.43	87.97	81.19	267.99	72.42	94.18
96	E29a_E30a	KnownJunction	0	39.76	62.53	49.22	48.76	124.28	63.25	64.08
97	ER30a	ExonRegion	0	62.18	44.65	58.61	53.09	133.23	56.22	44.53