Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SEC16A	Gene	0	124.31	325.71	137.27	315.11	70.15	197.99	143.61
2	371706	Transcript	0	42.09	80.36	22.99	112.86	10.26	87.21	37.96
3	398348	Transcript	0	0.76	1.26	1.21	6.22	0.00	7.79	0.77
4	313050	Transcript	0	0	0	0	0	0	0	0
5	290037	Transcript	0	0	0	0	0	0	0	0
6	404925	Transcript	0	51.66	151.90	63.46	100.02	3.41	85.73	36.96
7	277537	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	398335	Transcript	0	15.93	15.17	10.26	13.24	2.95	10.07	5.10
9	313084	Transcript	1	4.31	11.03	2.44	60.17	0.00	60.89	0.00
10	IG31_AR2	ActiveIntergenicRegion	0	4.92	100.34	4.59	101.00	6.69	56.78	6.73
11	IG31_SR2	SilentIntergenicRegion	0	5.45	4.40	9.04	4.68	2.61	3.19	1.43
12	ER1a	ExonRegion	0	121.90	514.71	149.57	387.13	55.33	235.01	165.11
13	E1_Ab	KnownBoundary	0	229.74	435.48	211.68	415.33	59.18	197.76	150.38
14	ER1b	ExonRegion	0	173.27	416.39	182.73	388.63	66.42	204.01	164.81
15	E1_Da	KnownBoundary	0	176.43	292.35	148.17	319.24	83.66	160.02	104.19
16	E1a_E1c	KnownJunction	0	51.66	151.90	63.46	100.02	3.41	85.73	36.96
17	ER1c	ExonRegion	0	133.35	362.37	178.42	362.26	97.18	179.95	184.41
18	E1_Ac	KnownBoundary	0	104.23	314.68	105.45	253.95	35.69	115.13	132.64
19	ER1d	ExonRegion	0	121.06	433.88	138.22	390.14	65.03	221.88	173.61
20	E1b_E2a	KnownJunction	0	99.46	484.10	131.04	412.76	65.38	238.17	147.46
21	ER2a	ExonRegion	0	91.60	422.14	116.31	422.27	67.75	236.98	160.33
22	E2a_E3a	KnownJunction	0	73.40	421.00	114.14	422.16	74.23	230.59	165.28
23	E2a_E4a	NovelJunction	0	1.03	11.30	0.70	9.21	0.00	11.18	0.00
24	ER3a	ExonRegion	0	104.11	500.84	138.37	492.37	86.75	269.68	191.41
25	E3a_E4a	KnownJunction	0	125.44	563.50	168.97	513.48	88.11	276.57	266.34
26	ER4a	ExonRegion	0	106.48	534.54	152.60	501.10	91.67	283.98	222.06
27	E4a_E5a	KnownJunction	0	123.29	504.67	143.82	496.07	81.72	227.80	244.88
28	ER5a	ExonRegion	0	110.63	394.15	111.86	398.09	76.74	217.76	171.60
29	E5a_E6a	KnownJunction	0	59.28	280.29	81.58	277.63	36.08	154.58	119.64
30	E5a_E7a	NovelJunction	0	3.84	19.73	6.75	18.83	0.00	20.53	15.11
31	ER6a	ExonRegion	0	68.36	280.11	66.18	268.33	54.65	139.04	98.25
32	E6_Da	KnownBoundary	1	53.46	260.69	72.21	245.28	22.80	150.05	110.72
33	E6a_E19b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER6b	ExonRegion	1	43.66	272.90	71.39	262.58	43.46	147.97	121.18
35	E6b_E7a	KnownJunction	0	64.52	289.30	96.24	280.85	66.53	153.80	150.97
36	ER7a	ExonRegion	0	94.16	299.93	133.02	281.48	61.32	147.16	148.77
37	E7a_E8a	KnownJunction	0	94.30	326.34	151.95	282.40	80.39	163.32	157.69
38	E7a_E11a	NovelJunction	0	5.86	20.20	4.67	26.74	0.00	20.45	8.99
39	ER8a	ExonRegion	0	100.98	301.56	144.27	262.77	63.65	153.05	170.45
40	E8a_E9a	KnownJunction	0	89.24	266.26	141.66	256.69	55.88	133.68	177.47
41	ER9a	ExonRegion	0	125.08	360.34	201.56	302.54	78.68	183.17	203.33
42	E9a_E10a	KnownJunction	0	96.28	333.12	154.19	290.96	62.57	168.65	167.86
43	ER10a	ExonRegion	0	114.02	382.68	168.34	317.68	90.64	187.72	192.27
44	ER10b	ExonRegion	0	135.59	399.02	188.89	351.02	92.81	199.35	199.38
45	ER10c	ExonRegion	0	99.67	393.08	134.56	325.15	84.13	174.93	176.90
46	E10b_E11a	KnownJunction	0	117.06	418.85	138.01	332.14	110.63	166.88	202.50
47	I10	Intron	0	26.87	20.48	17.74	14.83	5.21	9.02	5.16
48	I10_SR1	SilentIntronRegion	0	26.91	20.50	17.76	14.85	5.22	9.03	5.17
49	E11_Aa	NovelBoundary	1	40.56	23.15	22.79	18.58	10.81	8.74	7.74
50	ER11a	ExonRegion	0	157.62	517.34	176.60	458.27	137.72	241.00	260.56
51	E11a_E12a	KnownJunction	0	153.40	595.00	192.25	514.87	164.32	262.64	286.03
52	ER12a	ExonRegion	0	164.68	598.18	188.07	510.14	132.11	276.76	270.96
53	E12a_E13a	KnownJunction	0	218.24	594.65	197.66	508.31	124.23	262.32	254.02
54	ER13a	ExonRegion	0	171.02	564.25	192.61	521.45	145.68	300.68	246.82
55	E13a_E14a	KnownJunction	0	178.17	523.48	230.62	537.38	122.32	292.20	265.63
56	ER14a	ExonRegion	0	247.59	526.11	255.70	535.82	155.11	315.44	258.54
57	E14a_E15a	KnownJunction	0	267.36	495.61	281.28	580.81	209.90	312.57	273.73
58	E15_Aa	NovelBoundary	1	108.33	10.98	120.88	6.94	0.00	3.89	0.00
59	ER15a	ExonRegion	0	278.62	524.63	262.86	590.65	153.76	336.11	274.40
60	E15a_E16a	KnownJunction	0	243.67	454.29	233.81	474.50	126.26	281.26	219.30
61	E15a_E17a	NovelJunction	0	6.86	19.91	11.12	36.84	1.13	28.35	8.28
62	ER16a	ExonRegion	0	206.46	496.26	213.99	457.40	132.06	268.19	238.32
63	E16a_E17a	KnownJunction	0	204.33	472.75	195.61	386.35	166.40	229.73	233.42
64	I16	Intron	0	28.64	16.08	14.82	12.17	2.06	10.32	5.35
65	I16_SR1	SilentIntronRegion	0	28.73	16.13	14.87	12.20	2.07	10.35	5.36
66	ER17a	ExonRegion	0	143.81	459.61	156.46	427.85	112.06	230.61	209.16
67	E17a_E18a	KnownJunction	0	114.14	428.04	154.52	408.83	118.77	221.88	222.48
68	ER18a	ExonRegion	0	124.83	426.79	147.36	394.66	87.41	219.73	202.74
69	E18a_E19a	KnownJunction	0	80.33	281.03	100.49	260.45	62.06	159.78	173.60
70	E18a_E20a	NovelJunction	1	3.17	3.99	1.35	3.14	0.00	2.49	12.50
71	ER19a	ExonRegion	0	134.78	289.94	156.83	280.67	82.06	189.29	141.99
72	E19_Ab	KnownBoundary	0	278.64	237.44	272.76	292.88	74.83	182.53	153.12
73	ER19b	ExonRegion	0	222.34	336.22	222.17	343.21	73.15	258.64	169.52
74	E19a_E20a	KnownJunction	0	273.23	449.16	293.36	453.51	66.23	339.96	188.89
75	E19a_E21a	NovelJunction	0	0.00	2.71	0.68	10.00	0.00	12.62	0.00
76	ER20a	ExonRegion	0	364.29	547.67	411.25	512.44	83.14	438.54	225.30
77	E20_Da	NovelBoundary	1	44.66	17.05	12.17	11.59	5.88	13.32	3.67
78	E20a_E21a	KnownJunction	0	334.95	522.67	340.79	492.06	90.25	402.16	209.75
79	I20	Intron	1	36.93	18.10	17.39	14.11	5.15	9.40	5.31
80	I20_AR1	ActiveIntronRegion	1	53.16	11.27	21.04	8.16	6.63	8.43	4.20
81	I20_SR1	SilentIntronRegion	1	45.54	19.94	20.89	16.27	6.83	8.22	6.44
82	ER21a	ExonRegion	0	247.28	417.15	291.59	393.89	87.63	330.76	209.31
83	E21a_E23c	KnownJunction	0	172.56	499.39	236.45	375.54	65.29	328.32	191.98
84	ER22a	ExonRegion	0	9.16	8.91	4.56	6.48	2.81	3.76	3.19
85	E22_Da	NovelBoundary	0	1197.77	869.06	909.40	731.00	300.49	730.05	800.51
86	E22a_E23a	KnownJunction	0	2.74	2.97	3.36	3.06	3.14	2.87	7.01
87	E23_Aa	NovelBoundary	1	51.44	41.96	24.47	30.45	82.23	14.90	15.48
88	ER23a	ExonRegion	0	21.24	25.66	12.20	47.28	5.95	30.79	5.05
89	E23_Ab	KnownBoundary	1	57.23	92.42	35.38	240.14	8.18	209.06	18.93
90	ER23b	ExonRegion	1	11.41	24.25	5.94	63.70	2.49	56.23	3.58
91	E23_Da	KnownBoundary	0	10.20	2.78	6.48	2.93	3.16	7.05	0.82
92	E23a_E23c	KnownJunction	1	4.31	11.03	2.44	60.17	0.00	60.89	0.00
93	ER23c	ExonRegion	0	20.50	11.81	12.73	5.86	2.49	13.60	4.37
94	E23_Ac	KnownBoundary	0	17.39	6.52	11.65	0.00	1.01	10.32	0.60
95	ER23d	ExonRegion	0	167.00	499.12	228.24	446.85	59.91	339.89	183.44
96	E23_Db	KnownBoundary	0	25.67	19.15	17.66	6.10	3.18	11.20	2.91
97	E23b_E23d	KnownJunction	0	100.84	419.90	164.83	389.76	61.46	291.31	144.86
98	ER23e	ExonRegion	1	34.09	22.03	19.95	10.47	3.13	11.32	5.08
99	E23_Ad	KnownBoundary	0	31.28	17.68	16.21	8.10	4.91	0.00	6.56
100	ER23f	ExonRegion	0	214.97	568.16	286.05	546.53	116.30	418.70	234.53
101	E23_Dc	KnownBoundary	1	49.24	11.35	23.15	11.24	1.84	8.71	7.95
102	E23c_E23e	KnownJunction	0	189.16	499.55	274.44	505.36	107.63	372.49	230.49
103	ER23g	ExonRegion	1	30.69	37.20	18.04	14.46	2.77	14.03	8.38
104	E23_Ae	KnownBoundary	1	34.77	35.73	14.64	11.24	4.45	9.97	7.65
105	ER23h	ExonRegion	0	151.80	428.95	181.94	427.36	60.00	299.53	167.15
106	E23_Dd	KnownBoundary	0	8.71	3.13	5.40	3.20	1.18	0.00	0.00
107	E23d_E23f	KnownJunction	0	96.53	332.10	129.98	349.15	64.06	203.84	113.68
108	ER23i	ExonRegion	0	7.14	4.59	4.74	5.41	0.71	2.68	2.64
109	E23_Af	KnownBoundary	1	34.66	1.47	37.65	2.47	1.08	2.52	0.63
110	ER23j	ExonRegion	0	133.02	377.38	138.57	395.66	79.81	290.13	152.42
111	E23_De	KnownBoundary	0	12.80	20.57	8.29	4.23	4.38	5.20	3.57
112	E23e_E23g	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
113	E23e_E23h	KnownJunction	0	21.08	96.02	36.18	116.65	10.88	81.79	23.47
114	E23e_E23i	KnownJunction	1	1.52	2.52	2.41	12.43	0.00	15.57	1.53
115	E23e_E23j	KnownJunction	0	106.57	299.18	124.25	271.70	51.48	225.41	148.23
116	ER23k	ExonRegion	0	9.28	14.20	8.92	15.55	1.30	6.80	3.65
117	E23_Ag	KnownBoundary	0	6.44	6.02	4.58	25.90	0.00	7.93	4.73
118	E23_Ah	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
119	E23_Ai	KnownBoundary	0	12.60	59.08	27.06	93.74	10.10	58.88	15.64
120	ER23l	ExonRegion	0	16.39	53.05	23.03	82.30	5.40	44.14	13.94
121	ER23m	ExonRegion	0	31.34	117.30	51.71	161.83	15.66	114.70	32.08
122	ER23n	ExonRegion	0	36.26	119.57	54.62	186.76	22.36	148.15	37.33
123	E23_Aj	KnownBoundary	0	65.06	104.69	82.97	165.63	13.95	135.34	36.30
124	ER23o	ExonRegion	0	99.14	394.36	114.51	416.15	53.35	303.25	152.39
125	E23_Df	KnownBoundary	0	8.40	5.65	4.70	11.16	1.11	7.29	2.38
126	E23f_E24a	KnownJunction	0	85.05	278.45	110.46	262.40	61.90	182.00	142.87
127	E23f_E25a	NovelJunction	1	1.00	6.41	5.40	97.15	10.07	69.97	17.13
128	E23f_E26a	KnownJunction	0	42.09	80.36	22.99	112.86	10.26	87.21	37.96
129	ER23p	ExonRegion	0	8.52	9.13	7.83	10.62	4.27	4.79	6.53
130	ER24a	ExonRegion	0	81.21	297.69	103.69	264.36	74.10	181.82	138.81
131	E24a_E25a	KnownJunction	1	23.48	122.74	52.21	202.15	37.23	124.67	90.10
132	E24a_E26a	KnownJunction	1	63.87	157.42	51.99	59.11	37.78	77.77	73.05
133	E25_Aa	NovelBoundary	1	53.94	46.92	18.38	32.46	12.82	28.19	12.44
134	ER25a	ExonRegion	1	33.26	161.05	104.83	249.91	53.53	172.46	126.61
135	E25a_E26a	KnownJunction	1	42.56	175.49	133.97	284.19	59.61	211.45	141.32
136	I25	Intron	1	27.12	45.55	12.10	17.35	10.32	13.01	9.37
137	I25_AR1	ActiveIntronRegion	0	30.74	55.19	14.26	20.74	10.99	15.55	10.59
138	E26_Aa	NovelBoundary	1	46.87	58.03	51.83	24.60	5.65	10.93	9.29
139	ER26a	ExonRegion	0	140.02	467.83	168.34	562.56	104.59	391.94	250.18
140	E26a_E27a	KnownJunction	0	127.13	556.69	134.28	604.02	60.63	404.17	231.93
141	I26	Intron	1	27.05	31.86	12.05	20.82	6.94	14.69	5.53
142	I26_AR1	ActiveIntronRegion	1	27.09	31.91	12.06	20.85	6.95	14.71	5.54
143	ER27a	ExonRegion	0	169.76	594.28	158.31	579.18	109.62	381.40	239.11
144	E27_Da	KnownBoundary	0	206.14	404.92	182.03	460.06	129.17	321.95	234.19
145	ER27b	ExonRegion	0	238.55	417.03	235.77	490.58	153.41	373.53	234.16