Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RPL7A	Gene	0	38.12	54.65	35.73	50.97	284.57	35.47	48.04
2	323345	Transcript	0	379.06	566.59	367.80	509.21	3870.01	361.29	479.30
3	277425	Transcript	0	0.98	2.71	2.64	1.13	1.51	1.09	1.19
4	315731	Transcript	0	11.53	0.58	6.44	0.72	125.12	0.83	0.00
5	ER1a	ExonRegion	0	212.62	307.65	201.98	290.62	1758.73	198.43	270.06
6	E1a_E3a	KnownJunction	0	545.49	825.53	533.61	727.80	5981.29	524.15	688.54
7	I1	Intron	0	4.80	8.32	6.56	11.11	17.21	7.10	7.37
8	I1_AR1	ActiveIntronRegion	0	4.82	8.37	6.59	11.16	17.29	7.14	7.40
9	E2_Aa	NovelBoundary	0	12.65	9.67	14.11	25.33	2.90	8.50	16.41
10	ER2a	ExonRegion	0	1.32	5.42	4.48	2.26	3.02	2.19	2.39
11	E2_Da	NovelBoundary	0	13.97	18.57	16.09	26.03	6.82	13.43	14.90
12	E2a_E3a	KnownJunction	0	0.63	0.00	0.79	0.00	0.00	0.00	0.00
13	I2	Intron	0	6.33	5.29	2.91	8.97	5.11	9.78	4.39
14	I2_AR1	ActiveIntronRegion	0	6.45	5.37	2.96	9.10	5.21	9.93	4.46
15	E3_Aa	NovelBoundary	0	10.90	20.83	18.88	30.23	8.88	9.22	16.42
16	ER3a	ExonRegion	0	239.33	351.98	224.45	329.07	1713.31	229.41	311.80
17	E3_Da	NovelBoundary	0	4.74	7.54	10.20	2.82	4.17	10.77	7.27
18	E3a_E4a	KnownJunction	0	33.65	106.85	31.99	92.57	38.45	58.29	51.87
19	E3a_E5a	NovelJunction	0	0.00	10.25	0.00	6.88	0.00	6.54	0.00
20	I3	Intron	0	18.78	16.96	17.33	6.44	10.04	9.77	20.14
21	I3_AR1	ActiveIntronRegion	0	18.88	17.05	17.42	6.48	10.09	9.82	20.26
22	I3	Intron	0	3.12	11.33	3.60	4.64	6.65	8.00	3.13
23	I3_AR1	ActiveIntronRegion	0	3.18	11.53	3.66	4.70	6.78	8.14	3.17
24	E4_Aa	NovelBoundary	0	13.34	56.46	17.12	54.24	9.80	60.41	19.86
25	ER4a	ExonRegion	0	0.00	1.21	0.48	0.45	0.64	0.70	0.00
26	E4_Da	KnownBoundary	0	76.97	74.14	133.27	119.36	24.07	115.75	133.48
27	E4a_E5b	KnownJunction	0	0.00	1.16	0.00	1.44	0.00	1.66	0.00
28	ER4b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E4_Db	NovelBoundary	0	7.39	27.27	13.68	19.05	10.24	13.24	22.06
30	E4b_E5a	KnownJunction	0	40.96	195.59	72.30	178.67	412.78	130.09	171.25
31	I4	Intron	0	8.84	20.09	10.92	11.65	5.80	7.07	19.38
32	I4_AR1	ActiveIntronRegion	0	8.91	20.26	11.02	11.75	5.85	7.13	19.53
33	E5_Aa	NovelBoundary	0	9.80	19.83	10.19	19.32	9.73	11.39	18.62
34	ER5a	ExonRegion	0	0.00	0.01	0.01	0.01	0.02	0.01	0.00
35	E5_Ab	KnownBoundary	0	47.67	153.22	83.16	209.90	238.02	163.61	203.72
36	ER5b	ExonRegion	0	0.00	0.29	0.05	1.25	0.73	0.96	0.00
37	E5_Da	NovelBoundary	0	9.55	26.11	19.33	31.51	17.94	16.64	27.79
38	E5a_E6a	KnownJunction	0	84.30	213.48	84.15	306.13	244.08	211.24	225.02
39	E5a_E7a	NovelJunction	0	3.71	16.26	0.00	14.28	4.20	18.87	1.48
40	E6_Aa	NovelBoundary	0	15.05	49.78	28.24	33.86	31.97	21.60	49.41
41	ER6a	ExonRegion	0	0.00	0.00	0.00	0.03	0.00	0.00	0.00
42	E6_Da	NovelBoundary	0	98.69	337.22	120.93	186.85	150.10	186.98	123.98
43	E6a_E7a	KnownJunction	0	103.63	295.55	98.97	325.72	148.16	273.28	283.82
44	Ix	Intron	0	86.81	219.02	91.84	131.00	154.88	135.22	92.96
45	Ix_AR1	ActiveIntronRegion	0	87.97	221.93	93.04	132.66	156.83	137.06	94.20
46	Ix	Intron	0	19.86	0.00	16.01	0.00	152.57	0.00	0.00
47	Ix_AR1	ActiveIntronRegion	0	20.34	0.00	16.37	0.00	156.01	0.00	0.00
48	E7_Aa	NovelBoundary	0	333.60	439.76	303.43	416.50	338.21	328.54	196.01
49	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	E7_Da	NovelBoundary	0	208.61	113.60	220.70	138.57	118.33	76.27	134.08
51	E7a_E8a	KnownJunction	0	45.26	222.26	66.71	299.00	185.55	233.59	199.52
52	E8_Aa	NovelBoundary	0	175.13	96.86	156.29	135.24	41.43	100.39	75.76
53	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	E8_Da	NovelBoundary	0	84.90	52.07	71.35	33.73	40.99	36.93	48.00
55	E8a_E9a	KnownJunction	0	109.52	154.90	100.79	228.89	302.57	167.15	152.73
56	E9_Aa	NovelBoundary	0	33.65	27.93	27.85	8.64	11.94	18.44	19.65
57	ER9a	ExonRegion	0	6.47	0.00	3.61	0.00	70.26	0.00	0.00
58	ER9b	ExonRegion	0	23.05	0.00	12.87	0.00	250.24	0.00	0.00