Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	COQ4	Gene	0	75.47	47.14	28.35	29.62	84.95	26.06	67.72
2	300452	Transcript	0	98.07	63.00	49.80	45.74	115.74	39.57	113.02
3	372875	Transcript	1	16.95	12.77	6.24	0.84	26.08	1.20	18.33
4	ER1a	ExonRegion	1	240.49	55.91	33.20	33.50	185.81	41.97	70.89
5	E1_Ab	KnownBoundary	1	40.06	40.01	15.95	7.83	102.22	13.88	23.03
6	ER1b	ExonRegion	0	58.66	54.97	20.20	34.14	81.89	22.10	46.45
7	E1a_E2a	KnownJunction	0	54.44	66.55	18.94	32.89	45.81	24.01	47.28
8	ER2a	ExonRegion	0	30.35	58.17	14.34	27.24	42.06	22.61	33.05
9	E2_Da	NovelBoundary	0	8.13	19.81	4.96	9.45	8.41	11.34	10.16
10	E2a_E3a	KnownJunction	0	56.81	47.13	28.18	23.33	38.13	25.46	57.41
11	E2a_E4a	NovelJunction	0	6.79	6.99	0.70	13.84	8.37	10.61	2.04
12	ER3a	ExonRegion	0	38.92	42.78	24.32	23.86	69.72	30.99	79.67
13	E3_Da	NovelBoundary	1	6.43	8.33	4.08	9.54	8.05	0.00	7.31
14	E3a_E4a	KnownJunction	0	43.38	38.17	22.71	31.24	81.93	29.91	73.94
15	I3	Intron	1	6.76	9.49	2.82	1.74	7.08	0.85	7.13
16	I3_AR1	ActiveIntronRegion	1	5.96	9.81	2.76	1.38	6.94	0.42	6.19
17	I3_SR1	SilentIntronRegion	1	8.31	9.73	3.14	2.41	7.68	1.57	9.05
18	ER4a	ExonRegion	0	56.35	58.53	37.92	34.62	91.18	39.40	88.86
19	E4_Da	KnownBoundary	1	26.75	15.61	6.70	2.76	50.42	2.87	20.25
20	E4a_E5a	KnownJunction	0	43.46	36.78	42.52	26.58	73.19	26.16	109.00
21	E4a_E6a	NovelJunction	1	5.44	8.38	4.25	24.52	2.05	10.93	2.32
22	ER4b	ExonRegion	1	16.95	12.77	6.24	0.84	26.08	1.20	18.33
23	I4	Intron	0	15.79	7.40	5.43	2.91	19.30	1.54	13.52
24	I4_AR2	ActiveIntronRegion	1	18.35	9.62	7.39	4.03	22.54	0.92	19.27
25	I4_SR2	SilentIntronRegion	0	16.68	6.96	4.90	2.23	20.33	2.50	10.85
26	E5_Aa	NovelBoundary	0	24.82	8.72	10.12	6.45	40.27	2.22	20.18
27	ER5a	ExonRegion	0	82.64	67.08	50.58	42.08	109.37	34.44	136.52
28	E5a_E6a	KnownJunction	0	81.56	68.94	41.01	48.93	95.78	23.05	91.75
29	I5	Intron	1	10.24	10.24	3.32	0.84	18.20	2.62	16.82
30	I5_AR1	ActiveIntronRegion	1	10.27	10.28	3.33	0.84	18.26	2.63	16.87
31	E6_Aa	NovelBoundary	1	6.31	16.73	0.00	1.35	16.14	1.61	9.70
32	ER6a	ExonRegion	0	87.65	77.09	67.34	60.08	140.33	53.77	139.53
33	E6a_E7a	KnownJunction	0	94.05	76.61	76.78	63.96	125.87	66.44	156.01
34	ER7a	ExonRegion	0	56.65	58.58	37.13	45.04	79.81	31.17	87.42