Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AKAP2	Gene	0	108.91	11.97	651.68	371.68	71.37	509.57	98.25
2	374531	Transcript	0	0.00	0.00	20.41	16.46	2.03	13.40	0.79
3	302798	Transcript	0	0.00	0.00	3.39	5.28	1.62	4.24	0.31
4	374530	Transcript	0	0	0	0	0	0	0	0
5	314527	Transcript	0	0	0	0	0	0	0	0
6	374532	Transcript	0	0.13	0.20	26.10	33.49	4.25	19.62	3.04
7	259318	Transcript	0	0.00	0.00	97.75	56.90	3.53	31.15	7.62
8	374525	Transcript	1	26.09	5.38	74.01	45.03	6.12	234.13	22.62
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.02	0.00	0.00	0.01
10	E1a_E2d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	0	0.00	0.00	3.39	5.28	1.62	4.24	0.31
12	ER2b	ExonRegion	0	0.60	0.58	55.65	55.37	1.68	35.37	3.60
13	E2_Ac	KnownBoundary	0	0.92	1.21	120.41	105.76	2.12	70.24	7.84
14	ER2c	ExonRegion	1	0.77	0.77	130.18	127.22	5.31	102.88	10.31
15	E2_Ad	KnownBoundary	0	0.00	1.23	102.43	122.29	2.81	112.51	12.01
16	ER2d	ExonRegion	1	0.70	1.21	132.93	168.40	4.54	118.24	16.39
17	E2a_E5b	KnownJunction	1	1.03	1.08	158.61	184.19	5.21	110.12	19.13
18	E3_Aa	NovelBoundary	0	5987.26	5214.88	4867.71	4359.39	1298.98	4381.20	3033.46
19	ER3a	ExonRegion	0	0.00	0.00	0.07	0.08	4.65	0.00	0.00
20	E3_Da	NovelBoundary	0	3082.45	1847.17	2115.99	1638.01	1916.96	1543.67	1583.45
21	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER5a	ExonRegion	1	0.38	0.61	78.24	100.38	8.10	58.85	9.11
24	ER5b	ExonRegion	1	0.35	0.14	213.32	194.84	7.34	150.83	22.39
25	E5a_E6a	KnownJunction	1	0.00	0.00	250.16	188.26	1.91	153.19	19.98
26	ER6a	ExonRegion	1	0.79	0.23	257.18	193.25	10.76	179.50	24.40
27	E6a_E7a	KnownJunction	1	1.60	1.47	370.25	221.25	4.70	212.07	38.37
28	ER7a	ExonRegion	1	0.72	0.89	366.47	218.53	14.39	178.29	32.10
29	E8a_E9a	KnownJunction	1	1.03	1.37	278.27	172.60	8.41	142.55	35.14
30	E8a_E10a	KnownJunction	1	0.00	0.00	61.23	49.36	6.09	40.20	2.35
31	ER8a	ExonRegion	1	1.43	1.21	360.09	226.32	12.48	171.19	35.66
32	ER9a	ExonRegion	1	0.88	0.75	251.17	176.18	12.04	104.40	27.66
33	E9a_E10a	KnownJunction	1	0.00	1.63	169.18	108.64	12.56	57.75	18.79
34	E9a_E11a	KnownJunction	1	0.00	0.00	57.42	58.49	0.00	27.04	7.68
35	ER10a	ExonRegion	1	1.59	1.25	233.32	170.60	18.48	101.50	23.70
36	E10_Da	KnownBoundary	0	0.00	0.00	32.51	41.48	4.33	28.76	5.17
37	E10a_E11a	KnownJunction	1	0.00	0.00	195.51	113.81	7.05	62.31	15.23
38	ER10b	ExonRegion	0	0.00	0.00	41.09	40.82	2.22	32.84	6.21
39	E10_Db	KnownBoundary	0	0.00	0.00	36.18	39.39	3.04	29.32	8.74
40	ER10c	ExonRegion	0	0.78	0.28	63.07	28.45	5.73	32.03	6.25
41	ER11a	ExonRegion	1	0.67	1.09	344.28	216.06	24.19	114.00	38.78
42	E11a_E13a	KnownJunction	1	0.58	0.00	394.55	233.88	15.38	115.00	45.96
43	ER12a	ExonRegion	1	29.28	3.31	41.04	28.61	3.52	186.11	15.54
44	E12a_E13a	KnownJunction	1	29.47	11.85	105.94	75.07	6.25	444.45	40.73
45	I12_AR9	ActiveIntronRegion	0	26.33	1.74	20.69	2.67	4.75	10.46	8.43
46	I12_AR35	ActiveIntronRegion	1	8.60	2.85	153.89	113.85	6.17	9.02	4.88
47	ER13a	ExonRegion	0	192.23	35.19	1141.21	1004.06	109.99	1141.18	225.99
48	E13a_E14a	KnownJunction	0	105.16	16.89	700.44	573.98	96.13	717.97	169.66
49	E13a_E16a	NovelJunction	0	97.80	11.01	563.27	351.53	72.71	385.60	92.87
50	ER14a	ExonRegion	0	113.34	13.37	607.16	480.14	79.97	589.67	107.81
51	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	E14a_E16a	KnownJunction	0	152.10	13.03	704.58	442.26	86.91	503.09	105.09
53	ER15a	ExonRegion	0	0.53	0.06	2.71	1.50	0.64	1.73	0.55
54	E15a_E16a	KnownJunction	0	0.00	0.00	0.59	0.00	0.00	0.00	0.00
55	ER16a	ExonRegion	0	319.45	26.15	1730.54	774.52	204.02	1253.61	238.68
56	ER16b	ExonRegion	0	19.52	0.97	75.05	31.42	8.58	71.84	11.60
57	IG19	Intergenic	0	3.79	0.18	18.69	4.09	0.25	9.07	0.93
58	IG19_SR1	SilentIntergenicRegion	0	6.23	0.00	22.58	6.41	1.45	10.13	1.64
59	IG19_SR2	SilentIntergenicRegion	0	3.91	0.20	20.70	4.18	0.24	9.73	1.06