Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DENND1A	Gene	0	33.11	26.16	69.42	40.67	70.52	31.00	50.69
2	373618	Transcript	0	1.54	1.26	2.85	2.51	0.99	1.41	0.53
3	394215	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	373620	Transcript	1	6.90	12.33	15.55	20.27	16.07	13.09	27.90
5	373624	Transcript	0	0	0	0	0	0	0	0
6	297922	Transcript	0	0.53	1.45	6.29	5.77	1.28	4.04	1.06
7	394219	Transcript	0	0.00	0.07	0.12	0.00	0.10	0.00	0.04
8	ER1a	ExonRegion	0	0.00	0.16	0.00	0.00	0.00	0.00	0.04
9	ER1b	ExonRegion	0	3.86	6.11	5.75	5.34	5.49	8.79	6.14
10	E1a_E3a	KnownJunction	0	15.61	35.60	27.89	27.39	24.87	33.74	21.77
11	ER2a	ExonRegion	0	0.00	0.07	0.12	0.00	0.10	0.00	0.04
12	ER3a	ExonRegion	0	14.23	32.22	56.52	30.91	36.00	34.38	40.70
13	E3a_E4a	KnownJunction	1	13.47	24.59	64.18	27.61	51.57	33.50	57.07
14	E3a_E6a	NovelJunction	0	0.67	8.04	2.05	1.68	1.04	2.97	0.69
15	ER4a	ExonRegion	0	32.78	43.29	92.88	38.12	64.07	43.80	73.76
16	E4a_E5a	KnownJunction	0	33.10	49.84	79.45	30.02	75.13	29.40	51.92
17	E4a_E6a	KnownJunction	0	5.09	4.31	9.44	9.48	3.39	4.88	1.63
18	ER5a	ExonRegion	0	52.19	54.04	125.17	40.35	114.14	35.21	87.41
19	E5a_E6a	KnownJunction	0	48.85	48.05	119.76	39.96	129.35	35.24	91.91
20	ER6a	ExonRegion	0	83.68	84.83	208.69	71.36	169.99	71.33	140.12
21	E6a_E7a	KnownJunction	0	93.26	95.58	254.41	106.50	162.43	86.83	168.15
22	E6a_E8a	KnownJunction	0	0.00	0.00	0.86	0.00	2.24	0.00	0.00
23	ER7a	ExonRegion	0	133.42	108.83	304.15	114.01	230.67	106.66	191.55
24	E7a_E8a	KnownJunction	0	188.80	113.97	350.39	118.36	268.50	124.99	209.24
25	ER8a	ExonRegion	0	149.67	99.86	329.95	115.17	277.17	100.97	206.19
26	E8a_E9a	KnownJunction	0	120.87	70.54	258.84	99.18	264.85	84.71	192.14
27	ER9a	ExonRegion	0	123.22	75.37	277.01	106.73	265.50	80.46	199.13
28	E9a_E10a	KnownJunction	0	126.06	69.28	242.34	98.96	265.36	77.61	164.80
29	ER10a	ExonRegion	0	135.29	86.63	268.59	115.28	279.00	85.91	232.67
30	E10a_E11a	KnownJunction	0	162.63	79.94	289.02	122.24	294.32	69.25	240.38
31	ER11a	ExonRegion	0	88.08	79.36	147.73	94.37	158.87	59.67	122.80
32	E11a_E12a	KnownJunction	0	80.66	61.69	136.68	77.10	257.13	52.85	131.96
33	ER12a	ExonRegion	0	123.58	66.95	174.32	97.07	241.71	60.05	165.70
34	E12a_E13a	KnownJunction	0	148.74	61.48	205.05	94.79	260.64	60.46	199.58
35	ER13a	ExonRegion	0	158.95	83.77	262.38	126.14	304.24	73.91	217.03
36	E13a_E14a	KnownJunction	0	120.95	51.39	207.44	102.57	184.03	79.97	154.18
37	I13_SR2	SilentIntronRegion	0	9.99	8.22	9.16	7.70	5.76	9.59	5.12
38	ER14a	ExonRegion	0	97.24	52.21	172.81	91.21	189.69	65.59	133.84
39	E14a_E15a	KnownJunction	0	65.27	38.99	141.53	65.78	148.51	53.33	84.34
40	E14a_E18a	KnownJunction	0	0.00	0.00	12.47	3.60	3.20	5.36	1.40
41	ER15a	ExonRegion	0	63.11	51.52	131.55	66.41	171.57	51.38	108.81
42	E15a_E16a	KnownJunction	0	79.21	50.73	157.53	72.96	146.94	62.04	105.34
43	ER16a	ExonRegion	0	95.51	63.30	192.35	74.49	210.37	54.56	109.51
44	E16a_E17a	KnownJunction	0	113.22	51.39	176.09	63.99	316.42	31.60	98.08
45	E16a_E18a	NovelJunction	1	14.74	1.10	10.42	10.38	0.00	10.93	0.00
46	ER17a	ExonRegion	0	119.89	52.48	224.21	79.87	242.42	41.50	151.75
47	E17a_E18a	KnownJunction	0	99.49	46.53	202.48	74.72	181.47	54.00	164.77
48	ER18a	ExonRegion	0	136.40	56.81	259.52	109.44	241.50	75.26	180.95
49	E18a_E19a	KnownJunction	0	119.60	59.43	213.40	121.07	185.16	87.10	142.08
50	E18a_E20a	NovelJunction	1	9.85	2.44	19.16	5.58	2.12	2.41	0.63
51	E19_Aa	NovelBoundary	0	5.46	1.29	7.16	0.00	7.05	8.98	1.45
52	ER19a	ExonRegion	0	148.39	68.01	277.88	136.97	199.83	82.61	172.96
53	E19a_E20a	KnownJunction	0	167.03	61.76	277.88	126.05	307.46	69.01	189.92
54	ER20a	ExonRegion	0	88.12	53.00	149.10	86.91	203.95	45.87	114.22
55	E20a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	E20a_E23a	KnownJunction	0	43.94	47.24	65.54	49.22	95.48	41.06	54.27
57	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	ER22a	ExonRegion	0	1.06	0.56	1.95	0.58	0.56	0.78	0.43
59	ER23a	ExonRegion	0	31.74	47.87	52.49	54.39	72.59	35.37	60.97
60	E23a_E24a	KnownJunction	1	8.71	15.37	15.45	26.22	17.50	12.38	36.60
61	E23a_E25a	KnownJunction	0	0.00	1.42	4.79	5.80	0.00	2.89	0.75
62	E23a_E26a	KnownJunction	1	8.95	24.09	16.64	25.79	23.74	11.12	33.32
63	ER24a	ExonRegion	1	5.08	9.28	15.65	14.31	14.65	13.80	19.19
64	ER25a	ExonRegion	1	1.23	2.59	8.30	12.08	0.96	6.22	1.79
65	E25a_E26a	KnownJunction	0	1.44	3.23	5.02	7.37	0.00	5.71	1.33
66	ER26a	ExonRegion	0	13.38	28.41	39.68	44.86	48.43	38.93	43.22
67	E26a_E27a	KnownJunction	0	16.07	26.43	47.19	44.32	56.32	35.05	49.27
68	ER27a	ExonRegion	0	21.91	20.58	51.30	40.75	52.90	31.51	34.89
69	IG38	Intergenic	0	0.99	0.62	11.07	8.61	20.45	2.67	0.60
70	IG38_AR2	ActiveIntergenicRegion	0	1.09	0.71	12.51	9.81	23.30	3.04	0.68