Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CTNNAL1	Gene	0	79.24	108.85	410.29	1340.00	309.55	599.34	101.72
2	374593	Transcript	0	0.00	0.00	0.00	0.66	0.00	0.00	0.00
3	374595	Transcript	0	0.77	0.40	1.32	18.70	3.24	16.35	1.09
4	325551	Transcript	0	0	0	0	0	0	0	0
5	325580	Transcript	1	4.02	1.21	16.74	27.01	3.41	4.37	0.00
6	374594	Transcript	0	0.03	0.00	0.05	0.19	0.77	0.11	0.02
7	IG12	Intergenic	0	1.06	1.31	10.33	20.09	0.13	1.61	1.35
8	IG12_SR2	SilentIntergenicRegion	0	1.25	1.50	11.74	23.22	0.16	1.77	1.56
9	ER1a	ExonRegion	0	8.58	30.24	44.16	281.61	13.58	136.06	13.38
10	E1a_E2a	KnownJunction	0	25.80	83.86	190.67	699.49	58.55	327.98	46.09
11	E1a_E3a	NovelJunction	0	2.35	3.94	11.55	68.62	2.03	40.15	1.71
12	ER2a	ExonRegion	0	49.03	96.89	319.34	1014.50	167.75	587.32	68.67
13	E2a_E3a	KnownJunction	0	55.69	106.92	435.85	1379.59	246.07	733.40	112.62
14	ER3a	ExonRegion	0	121.67	131.82	607.26	1590.67	366.70	761.04	127.51
15	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	1.33	0.00	0.00	0.00
16	E3a_E5a	KnownJunction	0	153.96	153.11	677.52	1909.87	459.49	812.54	138.11
17	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER5a	ExonRegion	0	187.07	170.17	751.65	2027.21	517.99	864.73	160.23
19	E5a_E6a	KnownJunction	0	168.13	134.33	648.10	1894.89	409.05	776.98	131.63
20	ER6a	ExonRegion	0	149.18	152.71	645.16	1812.39	480.17	650.23	142.15
21	E6a_E7a	KnownJunction	0	163.19	142.34	650.82	1697.07	508.18	626.95	134.08
22	ER7a	ExonRegion	0	121.42	147.45	608.38	1699.32	479.44	599.18	144.76
23	E7a_E8a	KnownJunction	0	121.44	122.37	570.63	1706.77	552.81	577.03	125.10
24	ER8a	ExonRegion	0	114.32	131.28	555.65	1752.60	441.26	588.58	132.14
25	E8a_E9a	KnownJunction	0	117.86	107.50	541.86	1654.83	368.78	549.56	114.12
26	ER9a	ExonRegion	0	110.72	105.62	574.34	1594.78	462.41	555.74	130.14
27	E9a_E10a	KnownJunction	0	86.42	101.64	539.20	1553.67	471.36	531.92	132.88
28	E9a_E12a	KnownJunction	0	4.02	1.21	16.74	27.01	3.41	4.37	0.00
29	ER10a	ExonRegion	0	121.54	117.95	605.35	1714.57	487.78	668.26	130.06
30	E10a_E11a	KnownJunction	0	79.56	122.56	568.13	1804.51	546.95	743.43	132.08
31	E10a_E12a	NovelJunction	1	1.70	2.78	9.93	89.89	3.16	57.89	0.00
32	ER11a	ExonRegion	0	105.32	126.68	570.39	1735.99	517.52	707.07	131.40
33	E11a_E12a	KnownJunction	0	109.60	124.95	511.24	1676.67	514.95	687.55	129.26
34	E12_Aa	NovelBoundary	1	27.54	7.07	17.49	13.63	1.18	7.13	0.54
35	ER12a	ExonRegion	0	98.76	136.18	480.13	1754.54	429.70	709.03	130.73
36	E12_Da	NovelBoundary	1	58.06	2.65	65.92	39.58	1.04	13.13	0.66
37	E12a_E14a	KnownJunction	1	36.15	74.82	262.52	1186.37	372.95	484.83	105.15
38	E12a_E15a	NovelJunction	0	1.03	4.18	10.30	107.39	0.00	44.51	0.60
39	I12	Intron	1	20.26	7.22	31.67	22.93	1.80	12.49	2.01
40	I12_AR1	ActiveIntronRegion	1	32.33	8.93	34.70	19.14	1.82	8.94	0.97
41	I12_SR1	SilentIntronRegion	0	18.21	7.06	32.12	23.71	1.59	13.16	1.96
42	I12_AR3	ActiveIntronRegion	0	18.99	6.33	25.67	24.55	3.60	13.76	4.22
43	ER13a	ExonRegion	0	0.07	0.00	0.09	0.39	1.55	0.21	0.03
44	E13a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	I13	Intron	0	18.57	8.49	24.09	18.40	3.04	17.60	3.38
46	I13_SR1	SilentIntronRegion	0	20.51	10.40	28.90	22.78	3.89	18.76	4.20
47	I13_AR2	ActiveIntronRegion	0	22.51	11.57	24.60	25.99	3.23	19.98	4.11
48	I13_SR3	SilentIntronRegion	0	21.42	8.08	22.51	14.52	3.09	21.00	3.27
49	ER14a	ExonRegion	1	42.61	120.65	328.25	1507.54	336.60	640.91	133.82
50	E14a_E15a	KnownJunction	1	35.20	108.55	257.89	1193.93	319.67	523.67	102.94
51	I14	Intron	0	21.84	7.38	26.84	22.07	3.51	24.60	3.48
52	I14_AR1	ActiveIntronRegion	0	19.85	4.06	20.86	14.83	3.07	13.50	2.62
53	I14_SR2	SilentIntronRegion	0	29.07	9.91	33.15	32.56	4.50	35.35	4.89
54	I14_AR3	ActiveIntronRegion	0	28.63	12.22	35.61	34.51	5.21	40.30	4.72
55	E15_Aa	NovelBoundary	1	27.52	15.63	25.92	34.30	5.42	33.26	5.20
56	ER15a	ExonRegion	1	42.93	114.46	317.35	1500.73	293.53	634.32	125.67
57	E15a_E16a	KnownJunction	0	43.39	89.24	304.52	1382.19	282.67	557.86	101.54
58	E15a_E17a	NovelJunction	1	2.60	1.52	3.84	87.02	0.00	21.63	0.80
59	ER16a	ExonRegion	0	52.54	109.81	356.28	1403.93	347.02	673.10	127.61
60	E16a_E17a	KnownJunction	0	39.67	76.24	348.58	1188.49	210.86	594.12	108.10
61	ER17a	ExonRegion	0	43.39	96.52	345.11	1283.48	300.01	663.14	101.81
62	E17a_E18a	KnownJunction	0	43.46	95.21	257.23	1092.91	322.37	592.14	69.87
63	ER18a	ExonRegion	0	59.87	113.45	318.93	1437.07	315.17	751.60	102.54
64	E18a_E19a	KnownJunction	0	67.64	131.96	354.65	1612.49	274.65	825.73	122.15
65	ER19a	ExonRegion	0	61.79	143.26	410.20	1706.02	265.60	889.87	113.58
66	E19a_E20a	KnownJunction	0	50.37	131.38	341.27	1687.61	170.52	845.26	87.36
67	ER20a	ExonRegion	0	55.67	129.30	294.85	1552.78	175.73	845.89	91.15
68	E20a_E22a	KnownJunction	0	36.85	94.47	225.74	1196.26	128.63	685.83	71.51
69	ER21a	ExonRegion	0	0.77	0.40	1.32	18.70	3.24	16.35	1.09
70	ER22a	ExonRegion	0	25.80	69.52	161.31	691.32	91.00	524.20	42.58
71	ER22b	ExonRegion	0	2.31	3.64	20.32	42.40	17.01	49.04	3.37