Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DFNB31	Gene	0	22.84	46.62	31.29	86.89	11.56	35.99	25.82
2	362057	Transcript	0	0.00	0.35	0.68	6.77	1.62	0.00	0.00
3	374057	Transcript	0	5.08	9.78	9.33	14.36	0.46	6.46	1.25
4	265134	Transcript	0	0.65	0.81	0.80	0.00	0.27	0.00	0.00
5	374059	Transcript	1	20.92	21.42	25.66	25.32	6.35	14.35	6.29
6	ER1a	ExonRegion	0	0.00	0.35	0.68	6.77	1.62	0.00	0.00
7	ER1b	ExonRegion	0	11.97	37.15	18.61	74.31	4.75	30.61	11.59
8	E1a_E3a	KnownJunction	0	28.09	62.21	46.70	118.93	5.09	67.32	26.03
9	ER2a	ExonRegion	0	1.17	0.00	1.03	0.00	0.00	0.00	0.00
10	E2_Da	NovelBoundary	1	6.64	2.76	23.09	8.51	0.00	1.66	0.00
11	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	I2	Intron	1	7.58	2.16	14.42	5.88	0.17	0.93	0.67
13	I2_SR1	SilentIntronRegion	1	8.00	2.19	15.00	6.08	0.17	0.90	0.71
14	I2_SR2	SilentIntronRegion	1	4.90	1.98	11.55	4.53	0.21	1.18	0.46
15	ER3a	ExonRegion	0	21.23	63.82	39.94	122.59	13.16	49.82	28.84
16	E3_Da	KnownBoundary	1	12.52	12.53	19.54	18.15	1.18	6.73	3.48
17	E3a_E4a	KnownJunction	0	16.57	49.29	26.36	89.62	18.51	36.18	29.09
18	E3a_E5a	NovelJunction	0	1.02	3.94	3.88	12.00	0.00	5.95	3.94
19	ER3b	ExonRegion	0	5.08	9.78	9.33	14.36	0.46	6.46	1.25
20	ER4a	ExonRegion	0	13.47	50.69	27.10	97.79	13.69	34.25	32.16
21	E4a_E5a	KnownJunction	1	11.17	51.44	20.58	96.39	8.83	49.34	33.68
22	E4a_E9a	NovelJunction	0	0.00	5.86	1.71	15.55	1.11	6.99	2.42
23	ER5a	ExonRegion	0	25.78	54.29	37.29	108.95	14.79	40.81	42.74
24	E5_Da	NovelBoundary	1	21.43	23.93	20.13	29.37	5.23	16.64	7.78
25	E5a_E6b	KnownJunction	1	9.48	28.32	21.54	63.10	9.80	31.46	30.37
26	I5	Intron	0	16.16	13.88	14.06	18.38	5.03	13.99	6.19
27	I5_AR1	ActiveIntronRegion	0	16.38	14.05	14.23	18.62	5.10	14.18	6.26
28	E6_Aa	NovelBoundary	1	9.23	33.34	18.35	40.15	6.45	29.00	5.39
29	ER6a	ExonRegion	1	20.92	21.42	25.66	25.32	6.35	14.35	6.29
30	E6_Ab	KnownBoundary	1	18.28	15.55	31.66	32.89	12.36	11.55	9.09
31	ER6b	ExonRegion	0	34.77	50.32	69.47	132.39	25.49	48.73	55.09
32	E6a_E7a	KnownJunction	0	31.83	47.58	62.44	133.45	23.47	51.67	53.76
33	ER7a	ExonRegion	0	35.07	71.35	59.66	147.29	18.46	56.22	54.81
34	E7a_E8a	KnownJunction	1	24.65	85.57	61.68	144.40	33.22	58.72	68.46
35	E7a_E9a	NovelJunction	1	3.96	6.99	8.18	38.63	4.08	8.25	3.44
36	ER8a	ExonRegion	0	22.56	61.60	43.84	123.16	20.10	44.92	45.43
37	E8_Da	NovelBoundary	0	5.26	13.00	3.02	6.80	3.30	8.12	2.01
38	E8a_E9a	KnownJunction	1	13.97	45.00	32.56	117.17	19.02	50.09	45.27
39	I8	Intron	1	18.88	12.32	11.91	7.83	1.62	1.97	2.87
40	I8_SR1	SilentIntronRegion	1	18.83	11.17	12.65	8.04	1.88	1.75	3.52
41	I8_AR1	ActiveIntronRegion	0	11.08	8.13	6.09	6.76	1.03	1.50	0.95
42	I8_AR3	ActiveIntronRegion	1	9.19	12.82	11.21	5.89	1.23	1.62	0.89
43	I8_SR3	SilentIntronRegion	1	15.77	13.52	9.30	7.55	1.19	2.09	2.12
44	I8_AR5	ActiveIntronRegion	1	43.67	16.30	22.65	9.60	2.51	3.38	4.16
45	E9_Aa	NovelBoundary	1	36.30	25.56	17.99	5.63	5.60	1.42	3.75
46	ER9a	ExonRegion	0	36.33	71.88	59.14	166.76	35.40	69.10	69.35
47	E9_Da	NovelBoundary	1	9.68	26.17	13.32	12.46	1.08	0.00	1.53
48	E9a_E10a	KnownJunction	0	47.17	92.19	70.17	207.68	32.09	71.39	86.46
49	I9	Intron	1	19.30	18.58	15.84	11.38	1.99	5.25	1.91
50	I9_AR1	ActiveIntronRegion	1	19.35	18.63	15.88	11.41	2.00	5.27	1.91
51	E10_Aa	NovelBoundary	1	8.60	23.88	11.38	15.20	0.00	1.45	1.09
52	ER10a	ExonRegion	0	34.91	75.36	42.08	142.16	19.40	51.21	48.06
53	E10a_E11a	KnownJunction	0	14.65	55.20	17.73	97.37	14.09	37.92	20.79
54	I10_AR1	ActiveIntronRegion	1	12.96	6.70	5.31	5.39	3.40	2.41	0.80
55	ER11a	ExonRegion	0	17.67	55.76	18.03	103.36	10.10	40.35	26.82
56	E11a_E12a	KnownJunction	0	29.32	46.08	28.60	110.80	9.82	44.62	32.16
57	ER12a	ExonRegion	0	17.52	62.76	16.59	104.39	13.48	48.01	23.88
58	E12a_E13a	KnownJunction	0	19.31	49.76	16.60	98.18	11.13	41.73	20.12
59	ER13a	ExonRegion	0	38.74	64.31	46.57	118.81	19.21	54.44	43.13
60	ER13b	ExonRegion	0	0.77	2.43	1.35	0.00	0.81	0.00	0.00