Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PTCH1	Gene	0	15.95	1.02	7.98	3.11	26.98	5.54	3.79
2	375284	Transcript	0	0.12	0.00	0.05	0.00	0.00	0.00	0.00
3	375274	Transcript	0	0	0	0	0	0	0	0
4	331920	Transcript	0	0	0	0	0	0	0	0
5	375290	Transcript	0	0.49	0.00	0.75	0.13	0.22	0.27	0.14
6	375276	Transcript	0	0.48	0.18	0.65	0.00	1.31	0.18	0.10
7	375271	Transcript	0	0.00	0.00	0.00	0.00	0.22	0.49	0.00
8	375275	Transcript	0	3.18	0.85	0.53	0.86	0.67	1.48	0.52
9	ER1a	ExonRegion	0	0.23	0.00	0.10	0.00	0.00	0.00	0.00
10	E1a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	0	1.18	0.39	0.06	0.93	1.40	0.09	0.00
12	E2a_E5a	KnownJunction	0	5.22	2.86	0.69	0.00	4.13	1.23	0.00
13	ER3a	ExonRegion	0	1.38	0.00	1.26	0.50	0.86	0.05	0.54
14	E3a_E5a	KnownJunction	0	0.58	0.00	1.72	0.00	0.00	1.02	0.00
15	ER4a	ExonRegion	0	0.96	0.35	0.79	0.00	1.47	0.35	0.19
16	E4a_E5a	KnownJunction	0	0.00	0.00	0.50	0.00	1.15	0.00	0.00
17	ER5a	ExonRegion	0	8.30	2.55	5.11	2.04	8.92	5.99	1.18
18	E5a_E6a	KnownJunction	0	9.90	5.15	9.40	4.31	16.94	5.12	1.50
19	ER6a	ExonRegion	0	27.22	2.54	12.67	5.92	27.13	7.25	2.95
20	E6a_E7a	KnownJunction	0	45.25	1.63	22.00	4.61	32.02	5.63	2.57
21	ER7a	ExonRegion	0	50.62	4.04	21.91	9.73	46.20	10.68	4.62
22	E7a_E8a	KnownJunction	0	42.48	4.78	17.07	12.65	54.57	17.98	5.04
23	ER8a	ExonRegion	0	45.69	2.80	25.62	8.21	51.92	10.95	5.01
24	E8a_E9a	KnownJunction	0	52.57	2.15	25.10	3.06	56.46	8.74	4.66
25	ER9a	ExonRegion	0	23.81	1.39	13.96	2.71	30.19	6.88	3.06
26	E9_Ab	KnownBoundary	0	9.73	0.00	7.56	4.17	29.81	12.06	2.49
27	ER9b	ExonRegion	0	10.45	0.00	4.07	1.89	17.33	5.60	1.85
28	E9a_E10a	KnownJunction	0	24.20	0.00	12.14	5.74	37.69	5.04	3.12
29	ER10a	ExonRegion	0	15.05	0.25	8.03	3.74	30.67	13.23	4.89
30	E10a_E11a	KnownJunction	0	24.07	2.29	10.30	3.55	47.35	8.87	4.60
31	ER11a	ExonRegion	0	24.67	3.47	10.60	5.45	37.11	9.01	5.49
32	E11a_E12a	KnownJunction	0	25.50	2.94	16.61	1.68	39.26	5.68	10.38
33	ER12a	ExonRegion	0	26.54	2.85	13.60	3.96	40.59	6.70	7.88
34	E12a_E13a	KnownJunction	0	11.43	0.00	7.24	4.77	33.29	2.14	2.11
35	E12a_E14a	KnownJunction	0	7.28	0.00	3.41	4.63	6.36	3.03	2.21
36	ER13a	ExonRegion	0	10.76	0.23	6.10	2.35	27.64	5.41	3.63
37	E13a_E14a	KnownJunction	0	20.08	2.39	8.09	4.20	24.92	5.82	5.72
38	ER14a	ExonRegion	0	31.81	2.32	16.05	5.25	37.38	4.87	5.96
39	E14a_E15a	KnownJunction	0	28.32	3.21	14.31	5.39	47.90	2.65	3.21
40	ER15a	ExonRegion	0	45.05	1.54	16.12	6.82	52.15	7.27	9.28
41	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	E15a_E17a	KnownJunction	0	54.59	1.63	31.08	12.03	43.82	6.41	6.71
43	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	0.43	0.97	0.00
44	E17_Aa	NovelBoundary	0	22.78	0.00	17.37	0.00	1.18	0.00	0.70
45	ER17a	ExonRegion	0	62.02	1.04	33.28	11.17	53.90	11.55	10.85
46	E17a_E18a	KnownJunction	0	44.78	1.50	21.10	16.42	33.15	11.95	9.80
47	ER18a	ExonRegion	0	20.97	0.60	11.37	6.72	30.96	7.82	5.47
48	E18a_E19a	KnownJunction	0	18.69	0.00	14.33	7.96	26.46	8.50	6.41
49	ER19a	ExonRegion	0	34.36	1.40	20.54	5.17	51.79	8.15	6.63
50	E19a_E20a	KnownJunction	0	29.02	1.42	31.03	4.61	53.39	6.78	8.41
51	ER20a	ExonRegion	0	35.06	0.82	23.23	2.20	69.13	10.33	9.22
52	E20a_E21a	KnownJunction	0	32.35	3.13	20.12	6.12	59.66	9.51	8.41
53	ER21a	ExonRegion	0	40.65	2.57	17.64	2.85	63.02	8.85	8.54
54	E21a_E22a	KnownJunction	0	57.45	1.10	14.21	2.38	49.15	1.63	6.74
55	ER22a	ExonRegion	0	27.79	5.13	10.34	4.49	34.37	6.61	4.98
56	E22a_E23a	KnownJunction	0	12.00	1.37	5.99	4.58	17.84	3.22	3.78
57	ER23a	ExonRegion	0	15.18	0.85	6.29	6.12	39.22	13.59	6.57
58	E23a_E24a	KnownJunction	0	18.39	0.00	10.92	4.69	52.45	13.61	5.37
59	ER24a	ExonRegion	0	20.21	1.85	12.72	5.13	50.91	18.12	11.32
60	E24a_E25a	KnownJunction	0	17.46	2.55	5.09	2.79	32.53	15.20	5.86
61	E25_Ab	NovelBoundary	0	8.81	1.00	3.54	1.03	15.08	5.09	1.09
62	ER25a	ExonRegion	0	19.67	3.64	7.18	4.49	31.10	15.94	5.53
63	ER25b	ExonRegion	0	23.17	2.71	12.93	7.18	35.86	19.58	7.95
64	E25_Da	KnownBoundary	0	1.55	0.00	0.80	1.68	0.00	1.29	0.00
65	E25a_E25c	KnownJunction	0	22.98	1.10	12.90	6.12	39.12	23.29	16.83
66	ER25c	ExonRegion	0	1.72	0.35	1.07	0.09	1.35	1.30	0.14
67	E25_Ac	KnownBoundary	0	3.74	0.00	1.67	0.00	2.19	1.18	1.68
68	ER25d	ExonRegion	0	16.35	0.55	7.17	4.77	25.66	11.47	7.22
69	E25b_E26a	KnownJunction	0	17.02	3.02	11.01	7.10	45.05	13.16	8.20
70	ER26a	ExonRegion	0	10.82	1.77	4.49	4.38	14.36	6.67	2.98
71	E26_Da	KnownBoundary	0	5.46	1.44	2.10	7.88	5.05	2.84	0.00
72	E26a_E26b	KnownJunction	0	4.64	1.34	0.00	1.63	0.00	1.66	0.89
73	E26_Ab	KnownBoundary	0	3.86	0.00	0.00	1.22	6.69	1.02	0.87
74	ER26b	ExonRegion	0	12.45	1.21	1.35	11.22	12.63	4.90	1.35
75	ER26c	ExonRegion	0	12.09	1.37	2.66	4.90	13.07	6.95	0.67
76	E26b_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
77	E26c_E27a	KnownJunction	0	22.23	2.60	9.59	6.80	26.23	9.73	1.40
78	ER26d	ExonRegion	0	19.21	1.21	6.10	4.99	36.44	7.36	1.35
79	ER27a	ExonRegion	0	15.05	0.52	7.63	2.67	34.64	4.69	3.99
80	E27_Da	KnownBoundary	0	0.00	0.00	0.72	0.00	4.15	1.10	0.00
81	ER27b	ExonRegion	0	0.41	0.00	0.21	0.00	2.54	0.40	0.00
82	ER27c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00