Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C9orf97	Gene	0	35.49	22.86	33.78	17.51	50.20	32.23	25.83
2	354801	Transcript	0	0	0	0	0	0	0	0
3	341170	Transcript	0	0	0	0	0	0	0	0
4	375171	Transcript	0	0	0	0	0	0	0	0
5	375172	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	375165	Transcript	0	17.39	10.99	8.11	3.83	8.07	14.94	6.02
7	375163	Transcript	0	6.15	3.83	3.97	1.68	4.87	6.72	0.48
8	375173	Transcript	0	6.46	4.47	3.44	1.58	4.77	8.81	2.01
9	ER1a	ExonRegion	0	4.60	2.23	4.85	3.76	7.17	1.96	2.84
10	E1_Ab	KnownBoundary	0	30.71	17.68	40.81	20.10	83.94	12.11	24.08
11	ER1b	ExonRegion	0	17.94	16.92	31.28	23.43	38.38	22.45	22.30
12	E1a_E2a	KnownJunction	0	11.35	15.82	21.27	21.00	2.35	25.83	15.66
13	I1_AR3	ActiveIntronRegion	1	12.70	4.54	4.71	4.28	2.28	3.12	2.54
14	ER2a	ExonRegion	0	37.16	20.80	48.14	22.71	56.37	41.53	29.34
15	E2_Ab	KnownBoundary	0	20.46	12.30	25.25	15.82	24.04	22.94	15.16
16	E2_Da	KnownBoundary	0	3.47	3.26	1.84	4.14	4.33	2.81	3.32
17	E2a_E3a	KnownJunction	1	44.60	7.43	46.49	17.15	47.21	30.04	25.91
18	ER2b	ExonRegion	0	51.36	19.03	53.29	29.72	60.47	40.46	31.48
19	ER2c	ExonRegion	0	10.86	2.68	3.00	5.65	5.74	4.58	3.64
20	E2_Db	NovelBoundary	0	7.34	13.19	2.67	9.43	3.20	4.07	3.84
21	E2b_E3a	KnownJunction	0	1.39	0.00	0.78	1.41	1.18	0.00	0.00
22	E3_Aa	NovelBoundary	1	18.84	2.89	7.20	0.00	6.02	7.29	4.37
23	ER3a	ExonRegion	0	74.77	28.98	73.73	31.25	69.50	51.66	35.02
24	E3_Ab	KnownBoundary	0	62.15	55.20	64.70	34.19	63.00	39.69	40.20
25	ER3b	ExonRegion	0	46.83	38.95	56.84	19.96	79.71	30.69	34.23
26	E3a_E4a	KnownJunction	0	25.65	21.17	35.95	18.96	59.31	13.64	32.65
27	E3a_E5a	NovelJunction	0	4.14	7.28	6.71	6.04	3.25	10.99	3.67
28	I3_SR1	SilentIntronRegion	1	2.74	0.00	0.69	1.07	1.02	9.87	0.14
29	E4_Aa	NovelBoundary	1	2.77	4.65	1.38	1.60	1.11	19.75	3.74
30	ER4a	ExonRegion	0	25.62	33.56	38.86	23.62	62.85	26.93	39.85
31	E4a_E5a	KnownJunction	0	30.64	24.09	33.18	13.55	40.43	40.76	35.43
32	E4a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER5a	ExonRegion	0	31.34	35.32	45.09	23.99	56.32	51.32	38.13
34	E5a_E6a	KnownJunction	0	36.00	31.76	57.27	20.16	60.31	40.60	44.50
35	I5_SR2	SilentIntronRegion	1	7.85	0.87	0.97	0.94	1.32	9.66	0.14
36	ER6a	ExonRegion	0	51.46	31.75	52.61	25.85	74.11	49.71	35.26
37	E6_Da	KnownBoundary	0	8.78	9.12	4.87	6.34	9.11	9.89	2.91
38	E6a_E7a	KnownJunction	0	46.88	20.54	49.68	29.77	69.11	42.88	20.55
39	ER6b	ExonRegion	0	6.15	3.83	3.97	1.68	4.87	6.72	0.48
40	E6_Db	NovelBoundary	0	11.22	13.92	4.22	2.79	3.14	5.95	3.01
41	I6	Intron	0	10.18	4.63	4.26	1.60	5.02	7.90	2.97
42	I6_SR1	SilentIntronRegion	0	8.10	5.07	3.87	1.59	4.70	8.23	3.26
43	I6_AR1	ActiveIntronRegion	1	14.88	3.92	5.24	1.72	5.81	7.54	2.43
44	E7_Aa	NovelBoundary	1	7.36	1.60	6.14	2.28	5.16	12.89	0.69
45	ER7a	ExonRegion	0	77.77	31.82	68.08	31.70	100.44	58.91	35.35
46	E7_Da	NovelBoundary	1	5.12	1.31	0.00	0.00	0.00	10.93	0.00
47	E7a_E8a	KnownJunction	0	105.25	45.48	98.85	44.32	117.64	74.77	45.34
48	I7	Intron	1	7.28	0.92	0.72	0.00	0.41	14.08	0.00
49	I7_AR1	ActiveIntronRegion	1	6.71	1.60	0.55	0.00	0.43	15.58	0.00
50	I7_SR1	SilentIntronRegion	1	8.10	0.00	0.95	0.00	0.39	12.11	0.00
51	E8_Aa	NovelBoundary	1	7.98	0.00	0.00	0.00	0.00	12.25	0.87
52	ER8a	ExonRegion	0	103.17	46.23	89.74	40.95	99.41	67.78	40.16
53	E8a_E9a	KnownJunction	0	65.36	18.73	81.25	29.56	106.41	26.26	44.54
54	I8	Intron	1	6.67	1.35	1.00	1.68	1.73	17.48	0.66
55	I8_SR1	SilentIntronRegion	1	4.81	1.21	0.92	1.27	1.56	10.24	0.09
56	I8_AR1	ActiveIntronRegion	1	7.28	1.40	1.03	1.82	1.79	19.83	0.85
57	E9_Aa	NovelBoundary	1	9.35	5.57	1.52	1.68	0.88	40.47	0.75
58	ER9a	ExonRegion	0	75.25	32.52	67.36	28.36	115.19	71.84	46.23
59	E9_Da	KnownBoundary	1	14.75	8.88	6.39	0.00	6.45	26.00	2.48
60	E9a_E10b	KnownJunction	0	46.38	25.56	58.73	32.32	72.32	53.52	59.62
61	ER9b	ExonRegion	1	18.01	8.09	8.98	4.52	10.83	23.75	2.70
62	E9_Db	KnownBoundary	1	14.22	3.23	5.83	7.88	12.08	12.52	1.78
63	ER9c	ExonRegion	0	17.39	10.99	8.11	3.83	8.07	14.94	6.02
64	I9	Intron	1	10.04	4.60	3.98	2.94	9.21	15.02	4.56
65	I9_AR1	ActiveIntronRegion	1	10.05	4.61	3.99	2.95	9.22	15.05	4.57
66	E10_Aa	NovelBoundary	1	28.32	13.63	5.68	2.68	8.88	24.15	6.25
67	ER10a	ExonRegion	1	12.93	8.94	6.89	3.16	9.54	17.61	4.01
68	E10_Ab	KnownBoundary	1	11.67	20.49	5.42	5.17	5.14	27.01	7.25
69	ER10b	ExonRegion	0	47.79	55.12	49.81	36.50	69.44	64.76	60.00
70	E10_Da	KnownBoundary	0	35.85	56.46	33.86	29.37	53.76	50.87	41.55
71	E10a_E10c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	ER10c	ExonRegion	0	62.10	44.81	60.31	33.31	100.66	57.34	54.25
73	E10_Ac	KnownBoundary	1	26.55	11.56	15.85	4.23	56.64	25.81	18.36
74	ER10d	ExonRegion	0	1.60	0.38	1.08	0.68	4.72	2.08	1.32
75	ER10e	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00