Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AL591385.7	Gene	0	3.97	1.72	3.71	1.43	6.54	1.69	5.49
2	377476	Transcript	0	1.18	0.63	1.17	0.74	1.65	1.21	3.59
3	ER1a	ExonRegion	0	0.00	0.41	0.12	0.43	0.00	0.63	1.60
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	1.14	1.99
6	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER3a	ExonRegion	0	0.00	0.00	0.00	0.92	0.00	0.56	0.00
8	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	1.68	0.00	2.97	0.00
9	ER4a	ExonRegion	0	1.39	1.45	0.41	0.44	0.00	2.45	0.00
10	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	3.00	0.00
11	ER5a	ExonRegion	0	0.12	0.00	0.00	0.00	0.00	0.88	1.57
12	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER6a	ExonRegion	0	0.74	0.00	0.33	0.84	0.00	0.37	5.02
14	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	2.98	0.00	2.68	14.59
15	I6_SR2	SilentIntronRegion	0	5.76	1.06	7.99	0.00	7.79	1.50	7.83
16	I6_AR2	ActiveIntronRegion	0	4.85	0.69	6.86	0.00	4.17	2.09	7.98
17	I6_AR3	ActiveIntronRegion	0	16.51	0.45	11.81	2.16	12.02	1.07	8.82
18	I6_SR4	SilentIntronRegion	0	4.42	2.03	9.52	1.85	9.51	1.14	8.79
19	I6_AR4	ActiveIntronRegion	0	12.53	1.62	15.05	1.08	9.36	0.96	13.68
20	I6_AR6	ActiveIntronRegion	0	15.02	4.41	18.55	4.14	9.11	2.01	13.01
21	ER7a	ExonRegion	0	2.20	1.98	4.57	1.09	0.00	0.91	17.95
22	E7_Da	NovelBoundary	0	0.93	1.02	0.89	0.00	0.00	1.29	7.85
23	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.62
24	I7_AR2	ActiveIntronRegion	0	2.03	0.95	2.40	0.00	0.09	0.40	9.31
25	I7_AR3	ActiveIntronRegion	0	3.36	1.18	6.47	0.53	0.87	2.74	14.21
26	I7_SR3	SilentIntronRegion	0	3.15	0.91	3.90	1.16	0.32	2.53	13.71
27	I7_AR4	ActiveIntronRegion	0	2.66	1.44	5.47	1.25	1.00	1.23	10.37
28	E8_Aa	NovelBoundary	0	5.47	2.94	15.71	1.35	0.00	1.05	13.90
29	ER8a	ExonRegion	0	2.05	1.94	2.28	0.06	3.72	1.06	7.02
30	E8_Da	NovelBoundary	0	1.03	1.63	1.19	0.00	1.18	1.13	23.56
31	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	I8	Intron	0	4.64	1.95	7.61	1.42	1.50	0.70	11.36
33	I8_SR1	SilentIntronRegion	0	2.85	0.78	5.50	0.88	0.57	0.46	8.23
34	I8_AR1	ActiveIntronRegion	0	5.76	2.50	12.10	1.42	0.56	0.69	14.83
35	I8_SR2	SilentIntronRegion	0	8.01	0.70	17.68	2.49	0.81	0.00	16.62
36	I8_AR2	ActiveIntronRegion	0	8.02	1.27	13.88	0.97	0.33	1.10	13.60
37	I8_SR3	SilentIntronRegion	0	3.07	1.44	3.90	1.66	0.23	0.71	8.27
38	I8_AR3	ActiveIntronRegion	0	1.62	2.43	10.91	0.69	0.00	1.23	13.94
39	I8_AR4	ActiveIntronRegion	0	10.50	1.14	13.48	2.02	0.88	0.96	9.82
40	I8_AR6	ActiveIntronRegion	0	5.57	0.00	6.88	1.11	0.87	0.00	9.83
41	I8_SR5	SilentIntronRegion	0	4.79	2.28	8.56	1.11	0.47	0.82	11.50
42	I8_AR12	ActiveIntronRegion	0	9.34	5.46	13.96	2.61	2.89	2.94	14.82
43	I8_SR6	SilentIntronRegion	0	1.92	0.95	1.15	0.74	0.43	0.25	13.93
44	I8_AR13	ActiveIntronRegion	0	6.20	4.29	9.48	2.17	5.41	1.06	14.06
45	I8_SR7	SilentIntronRegion	0	5.80	3.72	8.59	1.07	3.16	0.50	14.79
46	I8_AR14	ActiveIntronRegion	0	2.02	1.94	4.20	1.19	1.42	0.00	8.05
47	E9_Aa	NovelBoundary	0	112.12	70.75	135.64	61.69	61.50	44.30	64.46
48	ER9a	ExonRegion	0	13.56	4.98	12.19	4.14	24.28	3.93	10.70