Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DDX58	Gene	0	66.06	20.63	52.19	22.16	56.07	43.88	46.41
2	379883	Transcript	0	0	0	0	0	0	0	0
3	379882	Transcript	0	0.82	1.23	0.00	0.00	0.00	0.00	0.00
4	379868	Transcript	0	7.38	5.88	2.77	7.67	0.92	7.91	1.61
5	ER1a	ExonRegion	0	6.63	0.00	2.74	4.74	2.54	7.15	1.22
6	E1_Ab	KnownBoundary	1	6.96	0.00	3.59	4.39	9.31	12.38	1.58
7	ER1b	ExonRegion	0	22.47	8.98	11.55	7.45	23.04	20.51	17.75
8	E1a_E2a	KnownJunction	0	2.22	7.36	3.81	2.87	7.17	11.58	8.40
9	E1a_E3a	KnownJunction	0	0.82	1.23	0.00	0.00	0.00	0.00	0.00
10	I1_AR1	ActiveIntronRegion	1	2.27	0.98	4.06	6.51	0.87	8.86	0.81
11	I1_AR2	ActiveIntronRegion	1	8.40	0.88	2.70	5.29	1.52	10.23	4.19
12	I1_SR3	SilentIntronRegion	1	3.58	0.68	2.02	3.46	0.08	11.01	1.54
13	E2_Aa	NovelBoundary	1	3.91	2.78	0.56	9.70	0.00	21.57	1.85
14	ER2a	ExonRegion	0	32.14	15.13	24.19	12.13	26.56	28.39	26.26
15	E2_Da	NovelBoundary	0	11.88	7.22	9.56	10.24	0.00	13.83	3.50
16	E2a_E3a	KnownJunction	0	33.30	17.97	31.70	8.37	77.55	17.10	25.12
17	I2_SR2	SilentIntronRegion	1	8.58	1.33	6.53	1.77	0.59	10.94	2.35
18	E3_Aa	NovelBoundary	1	11.98	1.02	6.50	6.04	0.00	21.57	1.18
19	ER3a	ExonRegion	0	93.06	22.89	64.25	25.58	48.70	47.79	40.92
20	E3_Da	NovelBoundary	0	18.54	2.68	6.84	11.27	4.31	9.49	5.22
21	E3a_E4a	KnownJunction	0	85.80	15.66	46.59	20.91	66.05	43.07	45.87
22	E3a_E5a	KnownJunction	0	7.38	5.88	2.77	7.67	0.92	7.91	1.61
23	I3	Intron	0	11.69	3.35	6.77	3.59	2.11	10.46	4.78
24	I3_AR1	ActiveIntronRegion	1	13.13	0.85	10.06	8.36	0.38	17.10	1.39
25	I3_AR2	ActiveIntronRegion	0	14.42	4.33	7.59	3.04	2.86	9.46	6.72
26	E4_Aa	NovelBoundary	1	17.69	5.88	12.66	7.04	2.24	31.19	6.26
27	ER4a	ExonRegion	0	102.94	17.31	62.83	20.09	71.16	46.57	52.37
28	E4_Da	NovelBoundary	1	5.17	1.63	5.02	3.22	0.00	24.90	4.80
29	E4a_E5a	KnownJunction	0	84.15	21.96	61.59	19.94	79.23	25.41	54.00
30	I4	Intron	1	9.52	2.50	6.10	5.45	0.49	19.17	3.02
31	I4_SR1	SilentIntronRegion	1	9.58	2.51	6.14	5.46	0.49	19.28	3.03
32	E5_Aa	NovelBoundary	1	53.06	4.20	37.85	11.22	0.00	42.88	6.59
33	ER5a	ExonRegion	0	144.18	29.17	79.85	32.94	102.39	54.88	56.11
34	E5_Da	NovelBoundary	1	19.18	4.81	3.97	7.07	0.85	26.18	2.39
35	E5a_E6a	KnownJunction	0	149.06	35.49	79.90	37.01	140.53	43.01	66.10
36	I5	Intron	0	5.82	1.99	4.47	2.60	0.32	11.37	2.16
37	I5_SR1	SilentIntronRegion	0	5.83	1.99	4.47	2.61	0.32	11.39	2.16
38	E6_Aa	NovelBoundary	1	15.57	2.86	12.65	6.10	0.00	29.43	7.27
39	ER6a	ExonRegion	0	184.28	32.97	100.32	42.99	115.50	54.26	72.77
40	E6_Da	NovelBoundary	1	15.15	1.34	9.28	8.53	0.00	14.47	2.89
41	E6a_E7a	KnownJunction	0	131.28	17.42	90.95	37.49	139.47	43.71	65.77
42	I6	Intron	1	5.15	0.43	5.26	4.67	0.19	10.27	2.17
43	I6_SR1	SilentIntronRegion	1	5.18	0.44	5.28	4.69	0.19	10.31	2.18
44	ER7a	ExonRegion	0	116.45	21.31	71.29	31.24	109.68	38.12	68.76
45	E7a_E8a	KnownJunction	0	104.18	29.74	74.37	34.78	69.48	21.73	66.97
46	E8_Aa	NovelBoundary	1	6.31	1.63	12.89	9.78	0.00	25.43	2.42
47	ER8a	ExonRegion	0	106.57	44.21	71.54	36.44	105.06	52.26	77.17
48	E8_Da	NovelBoundary	1	7.71	2.92	2.33	6.56	1.01	20.15	3.08
49	E8a_E9a	KnownJunction	0	67.89	23.54	46.37	18.53	94.17	23.07	60.09
50	I8	Intron	0	3.53	1.50	1.67	3.45	0.34	9.44	0.62
51	I8_AR1	ActiveIntronRegion	1	3.56	1.51	1.68	3.48	0.34	9.51	0.62
52	E9_Aa	NovelBoundary	1	4.64	1.58	6.18	13.76	0.00	17.18	3.78
53	ER9a	ExonRegion	0	53.67	23.67	50.29	22.61	71.45	34.47	61.45
54	E9_Da	NovelBoundary	1	2.75	1.63	6.68	8.94	1.13	14.45	4.43
55	E9a_E10a	KnownJunction	0	45.15	15.82	45.57	13.55	77.87	25.94	56.65
56	I9	Intron	1	4.24	2.59	5.70	5.81	0.59	17.98	3.71
57	I9_SR1	SilentIntronRegion	1	4.28	2.60	5.74	5.85	0.60	18.12	3.74
58	E10_Aa	NovelBoundary	1	0.67	1.37	3.85	2.74	0.00	24.52	0.56
59	ER10a	ExonRegion	0	54.07	18.25	51.45	15.31	65.68	33.99	51.92
60	E10_Da	NovelBoundary	1	17.92	4.52	5.17	9.94	1.18	36.90	1.49
61	E10a_E11a	KnownJunction	0	30.81	7.20	43.31	11.46	56.83	23.93	52.15
62	I10	Intron	0	11.94	3.50	6.50	6.61	1.49	18.42	6.00
63	I10_AR1	ActiveIntronRegion	1	14.39	2.73	5.61	8.78	2.65	25.24	6.76
64	I10_SR1	SilentIntronRegion	0	11.99	3.56	6.34	5.62	1.29	15.35	6.37
65	I10_AR2	ActiveIntronRegion	1	17.06	4.37	8.30	9.08	1.66	29.34	7.33
66	I10_SR2	SilentIntronRegion	0	6.02	2.91	5.58	5.60	1.30	12.10	3.62
67	E11_Aa	NovelBoundary	0	3.30	5.70	5.26	2.55	0.00	12.03	1.66
68	ER11a	ExonRegion	0	64.08	23.66	48.93	15.64	75.97	31.29	57.95
69	E11_Da	NovelBoundary	0	2.64	5.20	8.62	2.57	0.00	14.15	4.84
70	E11a_E12a	KnownJunction	1	61.30	37.99	55.33	18.75	94.63	41.22	56.67
71	I11	Intron	1	17.07	2.43	13.60	10.09	1.38	19.18	5.92
72	I11_SR1	SilentIntronRegion	1	17.11	2.44	13.63	10.11	1.38	19.22	5.93
73	E12_Aa	NovelBoundary	1	19.51	1.10	15.12	7.23	0.00	22.81	6.41
74	ER12a	ExonRegion	0	105.83	35.64	77.82	23.72	99.01	41.01	73.69
75	E12_Da	NovelBoundary	1	7.73	3.73	10.89	17.26	0.00	41.06	4.89
76	E12a_E13a	KnownJunction	0	97.30	33.76	65.59	21.94	58.99	26.83	59.12
77	E13_Aa	NovelBoundary	1	37.54	1.42	28.24	2.71	15.28	6.14	5.14
78	ER13a	ExonRegion	0	83.13	26.47	63.89	18.78	89.52	27.34	64.92
79	E13a_E14a	KnownJunction	0	76.76	16.34	51.16	14.71	66.71	11.39	50.68
80	ER14a	ExonRegion	0	63.21	19.65	49.77	12.68	71.73	26.51	60.77
81	E14a_E15a	KnownJunction	0	44.83	13.48	39.92	12.03	66.44	25.62	69.92
82	I14	Intron	0	10.15	2.61	7.89	4.02	0.88	11.89	4.27
83	I14_AR2	ActiveIntronRegion	0	7.07	4.70	5.07	2.80	0.40	14.22	5.73
84	I14_SR2	SilentIntronRegion	0	12.90	1.84	8.80	3.70	1.02	10.20	3.65
85	I14_AR3	ActiveIntronRegion	0	11.58	3.05	10.81	4.84	1.06	14.80	5.56
86	I14_SR3	SilentIntronRegion	0	6.31	2.33	4.92	5.24	0.86	10.99	2.83
87	E15_Aa	NovelBoundary	0	20.58	7.33	17.95	10.40	0.00	24.71	7.38
88	ER15a	ExonRegion	0	64.30	25.04	53.24	31.18	81.88	39.00	77.64
89	E15_Da	NovelBoundary	0	10.01	6.57	12.56	10.02	1.01	25.81	7.51
90	E15a_E16a	KnownJunction	0	69.90	20.89	46.47	28.07	99.98	22.89	80.50
91	I15	Intron	0	5.68	3.16	9.08	4.98	1.88	16.36	4.68
92	I15_SR1	SilentIntronRegion	1	6.27	3.05	9.94	5.42	2.10	18.52	5.26
93	I15_AR1	ActiveIntronRegion	1	3.01	1.21	6.77	2.49	1.89	11.14	3.71
94	I15_AR2	ActiveIntronRegion	0	4.80	4.77	7.04	4.33	1.08	10.89	3.02
95	E16_Aa	NovelBoundary	0	10.95	6.78	5.22	7.40	0.00	24.36	4.34
96	ER16a	ExonRegion	0	84.90	24.61	61.70	33.70	90.53	45.59	80.50
97	E16_Da	NovelBoundary	0	8.24	4.15	10.96	8.80	2.97	13.29	6.72
98	E16a_E17a	KnownJunction	0	86.89	22.38	45.38	18.04	90.85	32.51	74.12
99	I16	Intron	1	7.35	2.64	11.07	5.37	1.81	17.13	5.60
100	I16_AR1	ActiveIntronRegion	1	6.23	1.13	10.08	3.95	1.17	17.74	5.80
101	I16_SR1	SilentIntronRegion	1	10.51	3.39	11.34	7.33	1.92	19.21	6.43
102	I16_AR2	ActiveIntronRegion	1	5.15	4.68	9.42	9.71	2.44	28.36	8.41
103	I16_SR2	SilentIntronRegion	1	4.76	4.25	7.18	6.42	3.44	22.50	5.26
104	I16_AR3	ActiveIntronRegion	0	7.50	3.84	15.06	4.83	1.99	14.77	7.35
105	I16_SR3	SilentIntronRegion	1	4.63	1.03	7.05	1.68	1.16	10.13	1.98
106	I16_AR6	ActiveIntronRegion	1	13.38	4.96	24.06	10.15	4.14	26.63	8.56
107	E17_Aa	NovelBoundary	1	9.03	1.16	15.18	13.00	3.07	33.12	7.54
108	ER17a	ExonRegion	0	72.02	22.99	46.82	21.43	76.19	34.72	60.41
109	E17_Da	NovelBoundary	1	14.17	6.96	19.85	13.92	0.97	26.16	6.26
110	E17a_E18a	KnownJunction	0	52.94	16.66	31.31	13.00	56.43	6.81	43.45
111	I17	Intron	1	20.38	4.79	23.14	13.31	3.02	40.36	6.06
112	I17_AR1	ActiveIntronRegion	1	7.10	0.75	8.65	3.03	1.01	13.60	1.25
113	I17_SR1	SilentIntronRegion	1	10.04	1.55	15.66	4.12	1.30	10.79	3.29
114	I17_AR2	ActiveIntronRegion	1	22.25	4.47	23.25	11.56	3.49	30.83	6.33
115	I17_SR2	SilentIntronRegion	1	23.12	6.19	26.96	17.59	3.33	55.32	7.20
116	E18_Aa	NovelBoundary	1	23.60	12.16	26.66	13.87	2.26	69.01	5.66
117	ER18a	ExonRegion	0	54.40	18.76	54.84	23.25	37.25	57.28	37.36
118	E18_Da	KnownBoundary	0	24.88	10.96	27.94	10.13	4.98	31.49	12.50
119	ER18b	ExonRegion	0	15.56	6.63	16.90	8.23	11.67	26.27	14.81
120	IG11	Intergenic	0	10.07	2.94	14.33	5.43	8.92	13.25	7.20
121	IG11_AR5	ActiveIntergenicRegion	0	9.19	4.03	15.82	6.57	7.59	16.03	9.40
122	IG11_SR2	SilentIntergenicRegion	0	6.46	2.04	10.31	3.40	7.27	11.10	4.34
123	IG11_AR1	ActiveIntergenicRegion	0	24.67	2.29	22.33	8.21	22.00	10.97	8.87