Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RFX3	Gene	0	15.95	9.91	15.92	14.84	17.59	11.90	2.48
2	381985	Transcript	0	0.51	0.00	0.23	0.00	0.00	0.00	0.22
3	381986	Transcript	0	0	0	0	0	0	0	0
4	302303	Transcript	0	0	0	0	0	0	0	0
5	381992	Transcript	1	5.04	8.12	4.48	0.00	4.63	9.73	0.00
6	382004	Transcript	0	0	0	0	0	0	0	0
7	397849	Transcript	1	8.06	15.03	9.37	26.68	9.54	9.25	0.89
8	358730	Transcript	0	0	0	0	0	0	0	0
9	381984	Transcript	0	0.54	0.00	0.09	0.00	0.00	0.00	0.45
10	IG28_AR28	ActiveIntergenicRegion	0	13.59	2.98	13.21	2.73	1.19	2.85	2.95
11	IG28_AR18	ActiveIntergenicRegion	0	14.18	3.31	11.67	2.04	2.91	2.25	3.01
12	IG28_AR6	ActiveIntergenicRegion	0	1.67	4.71	2.56	2.57	8.69	0.63	1.27
13	IG28_AR5	ActiveIntergenicRegion	0	2.02	1.73	1.72	0.57	16.69	0.00	1.08
14	IG28_AR4	ActiveIntergenicRegion	0	5.78	5.04	6.29	3.16	28.89	2.28	2.96
15	IG28_SR3	SilentIntergenicRegion	0	2.82	3.76	5.85	3.58	17.44	2.08	3.78
16	IG28_AR3	ActiveIntergenicRegion	0	4.79	5.32	6.88	2.33	23.09	1.22	2.87
17	IG28_AR2	ActiveIntergenicRegion	0	3.74	9.34	5.05	8.80	14.36	3.47	2.61
18	ER1a	ExonRegion	0	1.90	7.77	2.76	10.45	3.78	6.41	1.26
19	E1_Ab	KnownBoundary	0	1.79	8.56	1.97	13.03	2.33	11.66	1.45
20	ER1b	ExonRegion	0	5.81	9.44	6.27	17.24	8.16	7.29	2.34
21	E1_Da	NovelBoundary	0	3.66	7.22	5.16	8.67	0.00	4.45	0.86
22	E1a_E2a	KnownJunction	0	0.00	3.13	1.88	1.49	0.00	0.00	0.89
23	E1a_E3a	KnownJunction	0	8.06	15.03	9.37	26.68	9.54	9.25	0.89
24	I1_AR2	ActiveIntronRegion	0	8.05	3.41	9.19	3.07	1.74	1.48	0.56
25	I1_SR3	SilentIntronRegion	0	10.77	3.63	12.37	2.97	1.96	0.91	0.73
26	I1_AR3	ActiveIntronRegion	0	23.06	6.48	18.21	9.67	4.57	6.03	0.65
27	I1_SR4	SilentIntronRegion	0	33.83	11.75	28.62	19.72	8.21	7.76	2.50
28	I1_AR4	ActiveIntronRegion	0	15.34	2.10	17.50	5.98	2.20	1.33	0.29
29	I1_SR5	SilentIntronRegion	0	10.00	2.32	10.06	3.21	1.89	2.35	0.89
30	I1_AR6	ActiveIntronRegion	0	12.04	2.49	10.07	3.54	2.24	2.35	0.80
31	I1_SR7	SilentIntronRegion	0	7.62	2.60	9.71	3.99	2.43	1.47	0.28
32	I1_AR7	ActiveIntronRegion	0	9.65	1.27	8.72	4.89	0.99	0.22	0.25
33	I1_SR9	SilentIntronRegion	0	10.22	3.05	12.18	3.68	1.68	2.06	0.42
34	I1_AR9	ActiveIntronRegion	0	11.81	7.20	10.45	4.65	1.88	2.23	0.00
35	I1_AR16	ActiveIntronRegion	1	7.86	1.21	6.40	9.56	0.81	1.23	0.00
36	ER2a	ExonRegion	0	1.16	1.70	2.16	0.45	0.85	0.00	0.34
37	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.97	0.00	0.00
38	Ix	Intron	0	12.84	4.18	7.79	5.07	3.12	3.67	0.41
39	Ix_AR2	ActiveIntronRegion	0	10.37	2.58	7.25	5.63	2.79	4.20	0.25
40	Ix_SR1	SilentIntronRegion	0	13.10	5.96	6.95	4.68	3.20	2.98	0.54
41	Ix_AR1	ActiveIntronRegion	0	23.68	3.29	15.11	6.40	4.54	4.12	0.66
42	Ix_AR4	ActiveIntronRegion	0	12.91	5.99	8.30	4.80	4.42	5.80	0.29
43	I2_AR3	ActiveIntronRegion	0	15.87	7.37	16.26	11.76	3.75	14.54	0.23
44	I2_SR3	SilentIntronRegion	0	7.86	4.34	9.67	5.92	2.14	6.08	0.33
45	I2_AR4	ActiveIntronRegion	0	7.15	6.17	7.32	9.42	1.51	7.97	0.34
46	I2_AR5	ActiveIntronRegion	0	5.69	8.65	6.98	7.82	2.46	4.43	0.31
47	I2_AR6	ActiveIntronRegion	0	9.24	3.27	10.33	3.86	2.09	3.49	0.35
48	ER3a	ExonRegion	1	7.00	18.63	9.41	24.25	12.24	5.99	0.67
49	ER3b	ExonRegion	0	6.74	22.93	8.75	27.48	10.71	12.11	1.14
50	E3a_E4a	KnownJunction	0	14.90	18.76	9.92	24.60	8.23	9.06	0.63
51	ER4a	ExonRegion	0	14.90	23.32	15.81	33.25	17.40	23.94	2.71
52	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	E4a_E6a	KnownJunction	0	12.85	20.86	14.40	29.66	27.87	30.10	5.27
54	ER5a	ExonRegion	0	1.36	0.00	0.61	0.00	0.00	0.00	0.08
55	E5_Da	KnownBoundary	0	2.92	0.00	0.65	0.00	0.00	0.00	0.00
56	ER5b	ExonRegion	0	0.54	0.00	0.09	0.00	0.00	0.00	0.45
57	ER6a	ExonRegion	0	15.60	17.92	20.80	24.69	22.99	28.07	3.83
58	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	E6a_E8a	KnownJunction	0	13.44	15.58	17.16	11.65	19.09	16.21	2.01
60	E6a_E9a	KnownJunction	1	5.04	8.12	4.48	0.00	4.63	9.73	0.00
61	ER7a	ExonRegion	0	1.02	0.00	0.45	0.00	0.00	0.00	0.45
62	ER8a	ExonRegion	0	8.26	11.06	14.91	9.21	18.60	8.84	2.02
63	E8a_E9a	KnownJunction	0	9.71	8.64	14.34	10.51	6.75	5.90	1.29
64	ER9a	ExonRegion	0	21.32	19.32	24.82	25.01	17.95	12.93	2.26
65	E9a_E10a	KnownJunction	1	25.60	7.33	30.78	28.36	21.16	10.93	1.45
66	ER10a	ExonRegion	0	23.69	13.42	23.56	29.86	24.21	16.41	3.16
67	E10a_E11a	KnownJunction	0	12.12	17.29	15.69	18.72	17.27	22.14	4.74
68	ER11a	ExonRegion	0	29.50	15.11	24.37	19.83	35.05	17.83	3.31
69	E11a_E12a	KnownJunction	0	37.65	20.49	18.51	23.22	27.99	26.10	2.71
70	ER12a	ExonRegion	0	26.36	18.02	28.18	22.59	27.00	29.46	4.72
71	E12a_E13a	KnownJunction	0	22.71	17.16	30.51	21.89	44.12	27.79	5.95
72	ER13a	ExonRegion	1	28.86	13.67	28.96	26.54	39.15	32.67	4.79
73	E13a_E14a	KnownJunction	0	15.15	14.40	29.37	21.46	15.93	23.50	3.98
74	ER14a	ExonRegion	0	17.65	13.74	27.89	19.24	34.03	17.33	3.14
75	E14a_E15a	KnownJunction	0	13.49	18.07	27.79	9.94	28.12	5.63	5.03
76	ER15a	ExonRegion	0	23.05	14.42	27.36	17.16	26.44	16.54	3.25
77	E15a_E16a	KnownJunction	0	27.71	18.55	20.38	27.12	36.35	10.29	0.00
78	ER16a	ExonRegion	0	27.26	17.12	26.68	27.48	40.21	18.14	4.63
79	E16a_E17a	KnownJunction	0	29.44	13.95	30.62	26.85	41.75	14.47	5.46
80	ER17a	ExonRegion	0	46.60	20.84	30.41	29.10	40.83	21.46	5.68
81	E17_Da	NovelBoundary	0	7.34	8.35	1.77	3.52	7.84	1.66	0.00
82	E17a_E18a	KnownJunction	0	44.90	9.48	33.90	16.88	46.94	16.78	4.70
83	E18_Aa	NovelBoundary	0	15.77	2.47	10.25	0.00	0.00	0.00	0.00
84	ER18a	ExonRegion	0	33.54	14.89	29.22	22.33	31.98	19.64	4.33
85	E18_Da	KnownBoundary	0	8.83	7.78	9.31	1.46	5.33	3.06	3.27
86	E18a_E19a	KnownJunction	1	21.40	4.57	18.26	13.63	21.16	26.02	0.00
87	ER18b	ExonRegion	0	6.41	5.35	7.76	4.38	5.80	1.98	0.64
88	ER18c	ExonRegion	0	1.26	5.30	5.54	2.49	6.33	0.00	0.00
89	ER18d	ExonRegion	0	2.54	2.37	4.20	2.03	3.84	0.25	1.25
90	I18_AR3	ActiveIntronRegion	1	2.65	3.95	9.31	1.25	0.20	1.23	1.05
91	ER19a	ExonRegion	1	29.45	6.78	22.53	13.46	22.15	20.50	2.51
92	E19a_E20a	KnownJunction	0	30.49	5.41	20.28	12.19	20.01	12.65	3.48
93	ER20a	ExonRegion	0	21.97	3.72	19.14	13.04	18.74	11.24	2.51
94	IG27_AR27	ActiveIntergenicRegion	0	13.65	4.21	10.65	8.30	21.61	6.50	2.95
95	IG27_AR26	ActiveIntergenicRegion	0	10.70	1.57	9.98	4.36	17.27	5.03	1.85
96	IG27_SR20	SilentIntergenicRegion	0	15.90	2.57	12.41	4.08	12.10	4.43	2.51
97	IG27_AR25	ActiveIntergenicRegion	0	6.74	0.68	5.57	3.84	14.31	4.63	1.38