Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PLEC1	Gene	0	155.25	902.57	139.48	304.76	76.63	138.26	1391.88
2	357316	Transcript	1	10.28	23.86	9.16	9.86	4.75	7.64	83.72
3	356346	Transcript	1	0.02	92.65	2.00	7.53	0.00	11.97	0.47
4	354958	Transcript	0	0.89	1.35	0.92	1.34	12.25	0.48	13.79
5	322810	Transcript	0	4.70	26.00	6.35	10.95	6.07	10.55	17.55
6	398774	Transcript	0	0.31	0.04	0.01	0.02	0.00	0.00	0.02
7	354589	Transcript	0	1.07	2.94	0.03	0.68	2.22	0.39	7.75
8	357649	Transcript	0	6.34	12.95	4.91	4.42	1.47	4.19	16.03
9	345136	Transcript	1	53.68	258.51	63.47	151.27	5.63	29.60	701.88
10	ER1a	ExonRegion	0	6.40	13.05	5.20	5.60	2.95	5.68	38.26
11	E1a_E9a	KnownJunction	1	14.17	34.68	13.12	14.11	6.55	9.59	129.18
12	E2_Aa	NovelBoundary	1	50.75	213.53	11.83	21.19	0.00	25.30	0.87
13	ER2a	ExonRegion	0	0.04	48.06	0.96	4.63	0.00	6.25	0.93
14	E2a_E9a	KnownJunction	1	0.00	137.24	3.03	10.43	0.00	17.69	0.00
15	ER3a	ExonRegion	0	1.78	1.57	1.83	1.33	16.04	0.96	16.80
16	E3a_E9a	KnownJunction	0	0.00	1.13	0.00	1.35	8.46	0.00	10.78
17	ER4a	ExonRegion	0	4.85	19.13	3.30	6.28	3.40	9.33	15.10
18	E4a_E9a	KnownJunction	1	4.54	32.87	9.40	15.63	8.74	11.77	20.01
19	ER5a	ExonRegion	0	0.62	0.08	0.03	0.04	0.01	0.00	0.05
20	E5a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER6a	ExonRegion	0	2.14	2.05	0.07	0.00	2.10	0.78	5.91
22	E6a_E9a	KnownJunction	0	0.00	3.84	0.00	1.35	2.35	0.00	9.59
23	ER7a	ExonRegion	0	2.79	7.76	2.99	3.12	0.76	3.70	5.65
24	E7a_E9a	KnownJunction	0	9.88	18.13	6.83	5.72	2.19	4.69	26.41
25	ER8a	ExonRegion	1	33.58	189.29	39.03	113.63	1.71	22.88	458.14
26	E8a_E9a	KnownJunction	1	73.79	327.74	87.90	188.91	9.54	36.31	945.62
27	ER9a	ExonRegion	0	136.50	801.77	154.57	293.88	49.98	120.40	1290.06
28	E9a_E10a	KnownJunction	0	165.71	958.07	176.76	347.85	42.88	145.31	1376.56
29	ER10a	ExonRegion	0	136.34	1033.51	159.40	311.78	56.57	153.51	1285.80
30	E10a_E11a	KnownJunction	0	89.76	1022.12	137.12	272.37	90.51	163.91	1110.34
31	ER11a	ExonRegion	0	149.70	1180.09	179.60	333.16	99.03	173.87	1474.15
32	E11a_E12a	KnownJunction	0	231.34	1273.40	228.86	389.60	72.71	196.71	1881.03
33	ER12a	ExonRegion	0	188.13	1294.35	219.97	438.68	84.09	198.60	1792.79
34	E12a_E13a	KnownJunction	0	164.18	1152.95	205.32	439.99	68.70	212.92	1599.11
35	ER13a	ExonRegion	0	147.35	1108.10	161.05	400.72	86.62	167.30	1483.60
36	E13a_E14a	KnownJunction	0	152.13	1072.56	160.76	440.96	88.52	150.32	1519.03
37	ER14a	ExonRegion	0	131.15	972.13	139.17	336.19	77.14	127.78	1327.17
38	E14a_E15a	KnownJunction	0	135.47	892.28	144.84	349.64	74.67	107.57	1418.84
39	ER15a	ExonRegion	0	111.38	856.16	112.86	268.34	80.67	111.47	1192.38
40	E15a_E16a	KnownJunction	0	97.15	674.70	99.33	209.71	59.25	104.95	969.96
41	ER16a	ExonRegion	0	105.54	904.49	108.57	309.26	78.73	92.84	1156.69
42	E16a_E17a	KnownJunction	0	146.15	917.03	129.03	342.13	85.83	124.91	1321.57
43	ER17a	ExonRegion	0	165.50	1002.76	165.93	373.74	83.79	124.71	1433.10
44	E17a_E18a	KnownJunction	0	167.03	926.65	164.68	355.46	105.03	132.12	1385.72
45	ER18a	ExonRegion	0	153.96	933.76	136.33	359.72	90.35	121.42	1243.67
46	E18a_E19a	KnownJunction	0	158.35	949.11	160.73	334.33	87.72	131.61	1383.10
47	ER19a	ExonRegion	0	138.48	887.32	110.03	331.86	73.36	106.40	1221.54
48	E19a_E20a	KnownJunction	0	154.88	831.67	127.77	315.80	87.19	103.39	1187.60
49	ER20a	ExonRegion	0	147.30	902.14	134.45	303.00	75.58	105.48	1196.46
50	E20a_E21a	KnownJunction	0	96.03	866.30	107.96	324.93	68.95	95.54	1137.30
51	ER21a	ExonRegion	0	107.21	771.79	116.78	264.59	53.52	96.13	923.22
52	E21a_E22a	KnownJunction	0	144.10	701.89	153.43	278.85	62.45	115.10	1099.89
53	ER22a	ExonRegion	0	130.55	717.75	136.32	266.29	52.30	118.32	1032.08
54	E22a_E23a	KnownJunction	0	133.29	750.13	150.79	259.83	57.40	90.64	1010.49
55	ER23a	ExonRegion	0	88.95	717.41	95.28	268.53	44.21	119.13	672.84
56	E23a_E24a	KnownJunction	0	160.19	818.83	164.97	267.12	45.62	139.06	1041.82
57	ER24a	ExonRegion	0	111.39	755.10	116.84	262.56	57.41	120.75	786.15
58	E24a_E25a	KnownJunction	0	92.70	658.20	105.35	208.14	44.33	109.85	782.22
59	E24a_E26a	NovelJunction	0	0.00	4.07	0.00	6.64	0.00	11.52	0.00
60	ER25a	ExonRegion	0	141.01	827.17	156.77	265.75	63.96	128.76	1212.43
61	E25a_E26a	KnownJunction	0	140.06	884.01	191.44	262.19	69.87	133.92	1265.21
62	ER26a	ExonRegion	0	140.24	900.79	169.16	278.37	67.58	134.30	1205.84
63	E26a_E27a	KnownJunction	0	138.11	724.93	153.62	254.79	69.11	106.53	1180.88
64	ER27a	ExonRegion	0	94.36	631.05	101.65	218.63	50.15	89.75	784.74
65	E27a_E28a	KnownJunction	0	113.46	558.19	130.51	230.84	54.82	85.92	826.82
66	ER28a	ExonRegion	0	92.68	538.12	84.03	212.42	43.68	78.31	579.40
67	E28a_E29a	KnownJunction	0	113.27	636.08	98.98	252.84	44.88	80.21	729.93
68	E29_Aa	NovelBoundary	1	51.99	12.82	44.58	2.93	1.01	0.00	18.65
69	ER29a	ExonRegion	0	140.48	823.18	137.30	297.17	57.42	86.67	967.92
70	E29a_E30a	KnownJunction	1	128.48	763.37	120.93	314.15	68.24	67.19	874.32
71	ER30a	ExonRegion	0	87.58	744.65	91.18	274.17	44.50	80.61	697.55
72	E30a_E31a	KnownJunction	0	107.98	754.04	96.42	248.51	52.65	76.78	620.52
73	ER31a	ExonRegion	0	79.14	653.01	80.96	224.41	39.14	75.41	493.91
74	E31a_E32a	KnownJunction	1	107.83	638.84	95.94	204.02	46.98	83.32	467.08
75	ER32a	ExonRegion	0	89.86	642.44	89.88	206.30	37.77	79.81	473.83
76	E32a_E33a	KnownJunction	0	76.92	687.92	101.60	223.37	46.17	100.42	536.94
77	I32_AR1	ActiveIntronRegion	1	40.79	30.83	11.28	5.75	1.45	0.64	18.34
78	ER33a	ExonRegion	0	98.35	616.06	88.29	212.48	32.31	76.63	506.44
79	E33a_E34a	KnownJunction	0	109.57	607.42	89.31	191.51	29.60	71.31	669.49
80	ER34a	ExonRegion	0	81.19	555.89	69.40	205.51	42.87	76.76	603.39
81	E34a_E35a	KnownJunction	0	121.32	724.88	132.87	291.77	82.51	112.24	1200.90
82	ER35a	ExonRegion	0	187.35	963.66	186.79	390.74	120.34	131.34	1937.18
83	E35a_E36a	KnownJunction	0	181.24	981.68	194.78	392.20	124.05	165.14	1790.67
84	ER36a	ExonRegion	0	170.25	1024.07	185.11	336.28	92.26	140.41	1617.77
85	E36a_E37a	KnownJunction	0	180.30	1176.96	180.87	369.41	131.70	134.86	1819.43
86	ER37a	ExonRegion	0	125.29	891.86	106.35	327.17	91.95	109.88	1268.02
87	E37a_E38a	KnownJunction	0	91.89	523.98	64.93	167.53	46.13	63.46	873.26
88	E37a_E39a	NovelJunction	0	15.02	218.89	21.10	71.49	42.65	45.00	155.24
89	ER38a	ExonRegion	0	91.30	588.31	62.96	188.78	35.44	70.39	813.23
90	E38a_E39a	KnownJunction	0	228.74	1062.00	174.14	373.86	73.45	112.99	2156.53
91	ER39a	ExonRegion	0	240.33	1308.02	216.74	439.55	121.29	217.40	2189.82
92	IG44	Intergenic	0	28.46	96.61	10.73	42.03	6.00	4.28	12.84
93	IG44_AR11	ActiveIntergenicRegion	0	5.54	4.23	1.75	4.81	0.33	6.49	18.61
94	IG44_SR10	SilentIntergenicRegion	0	5.51	4.33	1.41	3.41	0.53	4.60	14.69
95	IG44_AR10	ActiveIntergenicRegion	0	10.56	8.68	3.50	7.05	0.17	4.98	11.94
96	IG44_SR7	SilentIntergenicRegion	0	6.15	12.78	4.31	5.47	0.36	0.28	2.01
97	IG44_AR7	ActiveIntergenicRegion	0	31.13	193.20	13.89	70.58	4.74	5.78	16.97
98	IG44_SR6	SilentIntergenicRegion	0	30.81	227.40	12.38	56.57	2.06	4.90	10.73
99	IG44_AR6	ActiveIntergenicRegion	0	28.94	234.99	12.99	76.09	4.46	4.26	7.79
100	IG44_SR5	SilentIntergenicRegion	0	62.53	316.52	25.73	134.31	13.92	10.28	28.01
101	IG44_AR5	ActiveIntergenicRegion	0	68.42	354.19	32.39	151.57	20.07	12.56	33.33
102	IG44_SR4	SilentIntergenicRegion	0	51.20	360.32	23.78	147.73	19.94	15.98	32.86
103	IG44_AR4	ActiveIntergenicRegion	0	85.68	417.18	45.27	168.29	25.61	17.67	36.92
104	IG44_AR3	ActiveIntergenicRegion	0	87.22	398.15	44.33	163.73	24.39	17.11	43.52
105	IG44_SR3	SilentIntergenicRegion	0	173.96	453.62	68.33	199.53	38.17	16.44	59.38
106	IG44_AR2	ActiveIntergenicRegion	0	188.20	706.07	56.12	340.01	52.29	35.62	61.78
107	IG44_SR2	SilentIntergenicRegion	0	61.34	111.10	19.92	39.11	10.77	5.67	20.91
108	IG44_AR1	ActiveIntergenicRegion	0	21.48	58.09	9.36	23.45	3.57	2.30	12.51
109	IG44_SR1	SilentIntergenicRegion	0	17.77	27.25	5.48	10.59	0.80	1.45	8.88