Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FAM49B	Gene	0	179.48	149.36	254.30	173.02	454.75	61.50	233.48
2	401979	Transcript	0	9.49	19.80	11.46	9.01	7.08	3.56	17.03
3	358017	Transcript	0	4.54	4.96	6.22	7.11	10.83	1.94	6.05
4	311292	Transcript	0	91.80	94.48	140.42	96.89	168.77	38.71	115.94
5	ER1a	ExonRegion	0	10.28	24.74	7.02	8.03	6.62	1.20	10.88
6	E1a_E2a	KnownJunction	1	16.49	32.76	16.80	11.65	6.32	2.52	29.22
7	ER2a	ExonRegion	0	11.56	24.09	16.67	7.41	14.87	5.97	23.78
8	E2a_E4a	KnownJunction	0	8.26	16.05	14.00	11.73	6.59	8.12	19.73
9	E2a_E5a	NovelJunction	1	3.71	23.80	17.53	9.18	11.00	7.61	12.21
10	E3_Aa	NovelBoundary	0	17.39	30.47	19.62	49.20	28.22	11.98	24.95
11	ER3a	ExonRegion	0	2.68	6.30	4.59	18.68	11.22	4.77	4.74
12	E3a_E4a	KnownJunction	0	8.23	8.80	11.12	15.14	23.95	3.56	15.06
13	E3a_E5a	NovelJunction	0	10.68	33.21	8.29	68.32	40.67	21.31	8.97
14	ER4a	ExonRegion	1	23.77	40.30	42.56	43.06	80.90	15.04	75.43
15	E4a_E5a	KnownJunction	1	24.28	43.14	44.92	36.49	106.11	13.11	94.75
16	ER5a	ExonRegion	0	10.32	18.85	18.81	14.93	54.01	6.88	36.43
17	E5a_E6a	KnownJunction	0	0.00	1.42	3.61	1.19	2.01	0.00	0.67
18	E5a_E8a	NovelJunction	1	65.21	96.71	127.09	105.30	180.94	44.27	183.87
19	E5a_E9a	NovelJunction	0	12.57	43.64	7.33	32.46	138.69	10.21	13.00
20	ER6a	ExonRegion	0	13.82	5.50	17.85	11.62	6.87	3.65	12.14
21	E6_Da	KnownBoundary	0	20.93	9.77	15.18	9.59	6.22	2.84	16.57
22	E6a_E8a	KnownJunction	0	0.88	1.37	2.80	6.23	1.01	0.00	1.52
23	ER6b	ExonRegion	0	10.46	6.22	8.10	4.15	4.50	1.05	7.40
24	E6b_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER7a	ExonRegion	0	3.83	6.28	7.77	1.34	14.67	2.23	4.58
26	E7a_E8a	KnownJunction	0	2.07	2.15	5.75	3.36	10.65	0.00	4.53
27	ER8a	ExonRegion	0	66.51	93.98	129.10	89.92	140.04	44.27	155.21
28	E8a_E9a	KnownJunction	1	64.01	125.95	165.26	129.47	181.52	76.81	200.80
29	ER9a	ExonRegion	0	138.66	185.04	292.47	196.77	552.23	75.57	313.76
30	E9_Ab	KnownBoundary	0	248.40	233.29	463.47	249.16	664.66	74.72	438.71
31	ER9b	ExonRegion	0	250.51	287.54	470.43	291.50	494.25	113.52	518.71
32	E9a_E10a	KnownJunction	0	171.22	304.38	331.37	311.98	394.80	143.24	450.24
33	E9a_E11a	NovelJunction	0	8.50	3.42	10.35	10.48	6.11	4.98	5.17
34	E9b_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER9c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER10a	ExonRegion	0	202.52	318.90	322.37	283.68	515.03	125.65	331.70
37	E10_Da	KnownBoundary	0	82.05	120.09	125.98	96.55	210.98	34.28	79.07
38	E10a_E10b	KnownJunction	0	150.69	156.53	243.81	158.02	354.51	59.87	149.71
39	E10_Ab	KnownBoundary	0	121.72	62.92	138.69	86.31	222.30	29.99	100.58
40	ER10b	ExonRegion	0	324.28	313.03	478.23	294.28	557.45	130.77	444.56
41	E10b_E11a	KnownJunction	0	398.71	343.45	597.60	391.49	883.52	148.10	630.94
42	ER10c	ExonRegion	0	389.35	348.98	592.30	371.07	663.76	145.66	557.87
43	E11_Aa	NovelBoundary	1	154.65	1.47	264.34	1.14	2.17	0.00	0.89
44	ER11a	ExonRegion	0	340.81	319.12	518.00	363.28	1009.61	131.40	495.59
45	E11_Da	KnownBoundary	0	102.53	89.85	146.20	104.00	399.30	37.52	133.61
46	E11a_E11b	KnownJunction	0	170.47	134.75	222.65	142.50	0.00	72.31	159.15
47	E11_Ab	KnownBoundary	0	181.25	114.73	212.68	117.01	515.69	41.19	127.64
48	ER11b	ExonRegion	0	329.51	253.18	407.78	277.82	967.45	98.32	321.65
49	ER11c	ExonRegion	0	420.28	278.16	481.21	307.87	956.93	98.33	352.49
50	E11b_E12a	KnownJunction	0	411.56	289.70	469.98	350.07	694.42	94.01	359.03
51	ER12a	ExonRegion	0	342.92	275.59	477.39	334.31	704.81	116.06	374.17
52	E12a_E13a	KnownJunction	0	331.76	232.29	469.06	270.50	812.15	66.60	329.38
53	ER13a	ExonRegion	0	304.31	219.06	433.89	259.67	896.12	76.15	370.03
54	E13a_E14a	KnownJunction	0	196.94	200.53	352.19	203.35	658.60	68.98	278.70
55	ER14a	ExonRegion	0	261.44	228.85	380.81	244.75	914.27	68.06	361.30
56	E14a_E15a	KnownJunction	0	239.65	199.51	326.35	254.14	902.03	63.35	357.98
57	ER15a	ExonRegion	0	245.60	244.75	364.26	279.00	882.44	79.12	404.43
58	E15_Da	KnownBoundary	0	92.26	91.58	133.41	111.26	325.64	36.42	146.41
59	E15a_E15b	KnownJunction	0	137.83	181.12	235.66	183.92	489.37	61.37	270.86
60	E15_Ab	KnownBoundary	1	68.03	92.71	125.38	122.37	281.06	39.90	160.11
61	ER15b	ExonRegion	0	222.59	245.81	344.56	294.70	792.30	92.77	402.96
62	ER15c	ExonRegion	0	204.44	228.26	329.28	295.05	766.02	80.93	376.21
63	E15b_E16a	KnownJunction	0	251.30	196.80	303.19	299.98	827.23	64.27	360.54
64	ER16a	ExonRegion	0	284.11	236.57	354.77	306.84	986.74	98.65	439.07
65	E16a_E17a	KnownJunction	0	244.79	252.44	372.51	322.22	927.12	130.89	426.40
66	ER17a	ExonRegion	0	244.53	161.49	322.44	202.77	525.00	77.12	261.71
67	E17_Da	KnownBoundary	0	51.54	37.46	92.03	52.58	137.21	21.49	90.04
68	ER17b	ExonRegion	0	19.73	17.83	45.90	19.55	72.74	7.68	40.22
69	IG8_AR1	ActiveIntergenicRegion	0	7.92	2.35	15.87	6.96	42.68	0.74	4.33