Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SPAG1	Gene	0	78.06	205.43	63.89	109.10	5.81	42.16	42.00
2	251809	Transcript	0	1.52	6.76	0.42	3.09	0.00	1.59	0.00
3	388798	Transcript	0	0.76	2.44	0.54	1.00	0.00	0.49	0.00
4	ER1a	ExonRegion	0	1.08	7.98	0.84	3.31	0.00	2.07	0.00
5	E1a_E3a	KnownJunction	0	1.95	5.54	0.00	2.87	0.00	1.10	0.00
6	ER2a	ExonRegion	0	1.52	4.87	1.09	2.00	0.00	0.99	0.00
7	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER3a	ExonRegion	0	3.80	16.34	3.39	14.62	0.65	1.72	1.08
9	E3a_E4a	KnownJunction	0	7.79	19.20	5.65	20.54	1.06	4.07	0.00
10	ER4a	ExonRegion	1	17.05	48.27	15.72	25.54	1.46	10.61	3.27
11	E4a_E5a	KnownJunction	1	27.15	65.57	22.85	23.35	2.05	16.54	0.79
12	ER5a	ExonRegion	1	25.44	59.73	25.18	20.95	3.31	19.44	3.32
13	E5a_E6a	KnownJunction	1	30.83	35.60	23.45	16.12	0.00	14.82	3.93
14	ER6a	ExonRegion	1	21.28	55.08	30.67	21.42	2.39	20.68	2.92
15	E6a_E7a	KnownJunction	1	14.69	60.84	29.29	20.83	3.25	26.26	2.72
16	ER7a	ExonRegion	1	28.22	62.38	32.29	24.58	4.25	16.66	4.20
17	E7a_E8a	KnownJunction	1	20.31	67.54	27.30	23.81	1.01	11.10	3.91
18	ER8a	ExonRegion	1	25.77	61.63	26.12	23.45	1.93	14.95	4.82
19	E8a_E9a	KnownJunction	1	27.24	50.52	28.45	17.72	5.74	12.14	4.10
20	ER9a	ExonRegion	1	24.23	62.83	23.02	17.94	2.11	13.81	4.16
21	E9a_E10a	KnownJunction	1	15.37	64.58	24.26	15.90	0.99	10.05	3.77
22	ER10a	ExonRegion	1	21.02	54.67	23.63	14.07	1.75	8.83	2.35
23	E10a_E11a	KnownJunction	1	21.75	41.88	22.56	18.67	2.17	2.84	0.62
24	ER11a	ExonRegion	1	12.28	40.99	15.48	11.25	0.58	8.99	3.34
25	E11a_E12a	KnownJunction	0	1.03	14.21	4.47	3.82	0.00	1.42	0.86
26	ER12a	ExonRegion	0	4.93	56.56	7.25	31.71	0.97	9.09	6.06
27	E12a_E13a	KnownJunction	0	21.20	127.00	12.96	75.26	2.35	25.62	17.31
28	E12a_E14a	NovelJunction	0	5.49	99.57	3.59	42.53	0.00	9.78	6.43
29	E12a_E15a	NovelJunction	0	0.00	13.29	2.16	7.96	0.00	1.66	0.00
30	I12_AR1	ActiveIntronRegion	1	18.93	35.78	18.72	12.37	0.08	6.21	2.05
31	E13_Aa	NovelBoundary	1	43.71	43.37	36.37	31.89	0.00	15.49	2.85
32	ER13a	ExonRegion	0	48.22	188.80	42.76	119.68	4.97	34.30	30.44
33	E13_Da	NovelBoundary	1	72.65	38.78	45.18	24.25	0.99	5.95	2.65
34	E13a_E14a	KnownJunction	0	22.33	173.18	38.34	104.82	6.20	36.37	26.76
35	E13a_E15a	NovelJunction	1	2.52	22.49	3.94	15.82	1.18	1.66	5.95
36	I13	Intron	1	35.66	21.29	20.51	10.40	0.41	6.13	2.09
37	I13_AR1	ActiveIntronRegion	1	63.30	22.24	31.05	13.36	0.49	6.65	0.99
38	I13_SR1	SilentIntronRegion	1	34.27	21.66	19.76	10.37	0.43	6.64	2.08
39	I13_SR2	SilentIntronRegion	1	42.36	16.52	27.74	12.16	0.61	2.78	3.77
40	I13_AR3	ActiveIntronRegion	1	31.49	21.52	17.59	8.37	0.08	4.13	1.48
41	E14_Aa	NovelBoundary	1	20.96	12.72	21.76	9.43	0.00	11.98	1.59
42	ER14a	ExonRegion	0	77.37	322.41	57.37	180.57	7.46	59.88	47.57
43	E14_Da	NovelBoundary	1	45.75	13.11	28.74	9.83	0.00	14.15	2.25
44	E14a_E15a	KnownJunction	0	70.90	290.80	79.45	158.81	8.60	44.43	55.88
45	E14a_E16a	NovelJunction	0	4.59	12.43	1.49	12.06	0.00	8.17	0.69
46	I14_AR1	ActiveIntronRegion	1	22.20	4.81	9.71	4.46	0.22	3.90	0.54
47	ER15a	ExonRegion	0	113.78	428.60	76.13	205.03	10.81	60.87	62.30
48	E15a_E16a	KnownJunction	0	161.78	435.45	126.96	226.97	14.59	60.54	76.37
49	E15a_E18a	NovelJunction	0	3.91	6.33	1.52	12.38	0.00	2.73	0.85
50	E15a_E19a	NovelJunction	0	0.87	7.43	1.78	6.96	0.00	9.65	0.83
51	ER16a	ExonRegion	0	200.42	535.58	130.02	262.68	12.76	83.87	91.95
52	E16_Da	NovelBoundary	1	21.30	4.12	18.88	3.36	0.00	0.00	2.24
53	E16a_E17a	KnownJunction	0	87.27	284.60	78.78	118.14	13.88	34.76	70.71
54	E16a_E18a	NovelJunction	1	35.97	102.46	14.38	79.38	1.06	29.16	4.11
55	E16a_E19a	NovelJunction	0	3.45	26.64	2.11	14.95	0.00	14.02	0.86
56	I16	Intron	0	23.49	26.03	18.52	14.63	0.43	3.69	3.04
57	I16_SR1	SilentIntronRegion	0	24.72	28.39	19.39	15.13	0.41	3.90	3.38
58	ER17a	ExonRegion	0	111.71	333.52	79.73	141.19	11.27	48.62	88.01
59	E17_Da	NovelBoundary	1	29.99	20.12	19.16	7.50	1.06	3.32	0.73
60	E17a_E18a	KnownJunction	0	82.45	322.51	56.75	134.70	7.79	38.99	58.62
61	E17a_E19a	NovelJunction	1	7.88	53.51	8.45	22.35	0.00	3.08	5.75
62	I17	Intron	0	33.35	31.69	20.67	15.31	0.41	12.76	5.50
63	I17_SR1	SilentIntronRegion	1	33.37	31.71	20.68	15.31	0.41	12.76	5.50
64	E18_Aa	NovelBoundary	0	21.28	42.90	23.18	19.18	0.00	10.16	6.98
65	ER18a	ExonRegion	0	124.83	400.20	98.61	212.22	12.08	81.96	96.50
66	E18a_E19a	KnownJunction	0	131.42	331.89	84.08	178.10	6.41	69.81	57.88
67	ER19a	ExonRegion	0	139.63	419.60	108.89	250.13	9.50	81.41	86.03
68	E19_Da	NovelBoundary	0	50.29	14.71	19.13	4.01	0.95	5.71	9.65
69	E19a_E20a	KnownJunction	0	116.78	451.50	105.18	242.06	9.27	70.38	79.65
70	E20_Aa	NovelBoundary	1	22.46	17.29	11.04	1.54	0.97	5.65	2.34
71	ER20a	ExonRegion	0	134.08	255.81	115.45	141.44	8.28	64.88	67.09
72	IG47	Intergenic	0	12.99	9.58	8.74	6.04	0.37	6.58	3.92
73	IG47_SR1	SilentIntergenicRegion	0	11.94	11.80	5.67	6.61	0.57	5.02	3.86
74	IG47_AR1	ActiveIntergenicRegion	0	12.11	11.95	11.09	3.55	0.30	8.26	4.59
75	IG47_SR2	SilentIntergenicRegion	0	14.55	12.68	9.98	7.71	0.43	10.71	4.85
76	IG47_AR2	ActiveIntergenicRegion	0	11.35	10.45	6.75	11.41	0.63	7.72	4.58
77	IG47_AR3	ActiveIntergenicRegion	0	10.67	9.82	7.18	5.37	0.04	2.59	4.97
78	IG47_AR4	ActiveIntergenicRegion	0	20.21	11.37	13.17	9.85	0.44	8.89	5.30
79	IG47_SR4	SilentIntergenicRegion	0	13.13	7.80	8.57	4.59	0.24	2.46	3.10
80	IG47_AR5	ActiveIntergenicRegion	0	23.63	2.43	10.92	8.73	0.81	3.68	4.05
81	IG47_SR5	SilentIntergenicRegion	0	17.35	1.57	8.50	4.53	0.63	1.27	4.88