Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	LETM2	Gene	0	2.99	9.55	21.28	38.65	6.15	53.22	40.49
2	297720	Transcript	0	0.00	0.40	2.07	4.26	1.09	3.88	2.92
3	379957	Transcript	0	1.10	2.36	2.41	4.67	2.25	6.38	8.92
4	IG41	Intergenic	0	2.70	3.71	5.84	7.99	0.37	12.68	1.18
5	IG41_AR1	ActiveIntergenicRegion	0	3.45	4.65	5.90	8.02	0.71	10.42	1.95
6	IG41_SR2	SilentIntergenicRegion	0	1.46	2.05	4.43	5.02	0.17	10.77	0.65
7	IG41_AR3	ActiveIntergenicRegion	0	11.47	9.98	24.53	17.46	0.81	36.25	0.67
8	IG41_AR4	ActiveIntergenicRegion	0	6.23	8.87	11.85	22.75	0.34	30.69	1.25
9	ER1a	ExonRegion	0	0.00	0.00	0.45	0.00	0.63	0.00	0.00
10	ER1b	ExonRegion	0	0.01	0.04	1.16	0.09	2.37	2.07	2.20
11	E1_Da	NovelBoundary	0	0.80	1.02	1.31	11.95	0.00	20.74	0.85
12	E1a_E2a	KnownJunction	0	0.00	0.00	0.76	0.00	1.18	3.16	4.70
13	I1	Intron	0	1.94	4.41	7.97	8.35	0.45	18.47	0.67
14	I1_SR1	SilentIntronRegion	0	0.38	2.96	4.21	10.59	0.36	12.01	0.18
15	I1_AR1	ActiveIntronRegion	0	0.99	3.25	3.39	6.18	0.42	11.55	0.22
16	I1_SR2	SilentIntronRegion	0	3.24	5.84	13.04	9.58	0.49	26.39	1.20
17	E2_Aa	NovelBoundary	1	3.22	3.70	3.46	4.14	0.00	33.93	1.43
18	ER2a	ExonRegion	0	0.71	2.37	2.89	4.62	1.26	7.98	2.70
19	E2_Da	NovelBoundary	1	6.89	2.94	9.59	10.94	0.00	38.91	0.00
20	E2a_E3a	KnownJunction	0	1.24	5.96	0.53	5.01	0.00	3.03	4.74
21	E3_Aa	NovelBoundary	0	5.27	3.97	9.93	15.66	3.41	31.30	7.42
22	ER3a	ExonRegion	1	1.22	6.99	5.37	12.69	4.20	17.87	8.29
23	E3_Da	NovelBoundary	0	3.00	1.52	6.42	9.64	2.33	24.41	0.67
24	E3a_E4a	KnownJunction	1	0.00	1.21	0.00	1.68	0.00	1.23	8.58
25	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	I3	Intron	0	0.88	1.61	4.46	5.95	2.86	11.87	0.63
27	I3_AR1	ActiveIntronRegion	0	0.89	1.61	4.47	5.97	2.87	11.91	0.63
28	E4_Aa	NovelBoundary	1	3.54	4.99	13.49	13.68	3.32	26.75	3.15
29	ER4a	ExonRegion	0	1.23	3.79	6.33	4.50	3.93	13.52	7.17
30	E4a_E5a	KnownJunction	1	2.07	2.08	0.89	7.83	2.84	4.40	11.01
31	I4	Intron	0	0.41	2.99	8.34	10.46	0.06	23.53	0.29
32	I4_AR2	ActiveIntronRegion	0	0.00	1.36	3.74	5.14	0.00	16.80	0.31
33	I4_SR2	SilentIntronRegion	0	0.35	3.29	8.38	11.03	0.08	24.61	0.20
34	I4_AR3	ActiveIntronRegion	1	1.83	4.62	19.82	19.68	0.00	38.57	1.23
35	E5_Aa	NovelBoundary	1	0.00	7.15	31.30	32.86	0.00	109.85	0.00
36	ER5a	ExonRegion	1	5.42	6.95	23.36	32.74	2.42	105.45	10.72
37	E5_Da	NovelBoundary	1	1.80	1.10	29.00	31.10	0.00	152.36	0.60
38	E5a_E6a	KnownJunction	0	1.90	5.28	0.89	3.87	4.17	8.50	6.58
39	I5	Intron	1	1.95	2.31	27.68	24.12	0.31	100.59	0.77
40	I5_AR1	ActiveIntronRegion	1	2.00	2.14	28.64	25.25	0.25	104.18	0.63
41	I5_SR1	SilentIntronRegion	1	1.72	3.32	23.42	18.76	0.62	84.44	1.52
42	E6_Aa	NovelBoundary	1	2.55	3.02	40.60	47.11	0.00	159.59	1.98
43	ER6a	ExonRegion	1	1.92	9.60	22.39	30.69	3.22	83.90	11.23
44	E6_Da	NovelBoundary	1	4.21	1.31	32.09	40.28	1.18	106.07	0.00
45	E6a_E7a	KnownJunction	1	1.03	9.27	0.00	9.56	3.32	3.64	9.75
46	I6	Intron	1	2.32	5.34	39.31	36.83	0.28	128.30	2.10
47	I6_SR1	SilentIntronRegion	1	0.27	3.09	19.33	18.73	0.20	68.28	0.86
48	I6_AR1	ActiveIntronRegion	1	0.24	6.18	27.25	43.46	0.00	137.59	1.82
49	I6_SR2	SilentIntronRegion	1	3.14	5.78	46.09	40.40	0.34	141.99	2.44
50	E7_Aa	NovelBoundary	1	2.07	4.31	48.93	32.27	0.00	135.42	3.12
51	ER7a	ExonRegion	0	1.40	8.87	17.91	22.20	1.84	47.34	11.47
52	E7_Da	NovelBoundary	1	2.50	7.51	49.19	41.50	0.00	145.28	1.56
53	E7a_E8a	KnownJunction	1	0.95	7.57	0.00	6.29	3.94	0.00	12.84
54	I7	Intron	1	2.02	5.52	26.56	32.16	0.91	92.09	1.94
55	I7_SR1	SilentIntronRegion	1	1.25	8.04	19.20	26.90	0.00	82.16	1.79
56	I7_AR1	ActiveIntronRegion	1	2.42	4.74	35.34	39.94	1.49	115.78	1.94
57	I7_SR2	SilentIntronRegion	1	2.02	5.18	23.34	28.90	0.83	80.05	1.99
58	E8_Aa	NovelBoundary	0	1.67	21.88	31.37	76.94	0.00	114.03	80.69
59	ER8a	ExonRegion	1	3.61	14.71	9.96	53.82	3.69	58.44	60.89
60	E8_Da	NovelBoundary	1	2.89	12.01	26.13	33.78	1.18	98.30	0.00
61	E8a_E9a	KnownJunction	1	5.76	17.05	5.73	33.84	3.16	6.03	66.94
62	E8a_E10a	NovelJunction	1	0.00	1.00	2.80	15.31	0.00	1.47	12.77
63	I8	Intron	1	4.05	8.20	51.38	35.07	6.61	107.75	1.32
64	I8_AR1	ActiveIntronRegion	1	1.03	7.35	16.52	22.05	2.73	50.18	1.03
65	I8_AR3	ActiveIntronRegion	1	5.76	9.77	53.88	39.76	6.93	129.74	1.32
66	I8_SR2	SilentIntronRegion	1	3.79	7.96	56.04	35.78	7.03	109.78	1.39
67	I8_AR4	ActiveIntronRegion	1	3.90	1.09	22.21	12.47	5.86	23.11	0.50
68	E9_Aa	NovelBoundary	1	8.45	8.43	88.87	63.07	1.18	156.89	8.61
69	ER9a	ExonRegion	0	10.06	15.68	44.81	65.98	10.62	55.18	109.97
70	E9_Da	NovelBoundary	1	12.78	7.07	70.30	41.88	10.37	101.01	2.41
71	E9a_E10a	KnownJunction	1	1.90	9.72	7.36	61.39	4.36	20.21	148.01
72	I9	Intron	1	4.95	4.86	56.99	27.55	7.16	62.45	3.33
73	I9_SR1	SilentIntronRegion	1	4.98	4.89	57.31	27.72	7.20	62.82	3.35
74	E10_Aa	NovelBoundary	1	3.81	10.46	41.92	22.81	7.12	79.54	9.30
75	ER10a	ExonRegion	0	7.27	12.70	40.68	81.79	6.53	61.28	112.72
76	E10_Da	NovelBoundary	1	5.57	5.46	50.61	19.26	5.21	64.96	0.59
77	E10a_E11a	KnownJunction	1	6.16	7.62	9.10	69.00	3.30	16.70	92.77
78	I10	Intron	1	4.39	5.90	48.06	41.62	12.87	109.34	2.91
79	I10_SR1	SilentIntronRegion	0	0.00	1.85	5.43	8.55	5.77	21.15	1.03
80	I10_AR1	ActiveIntronRegion	1	5.14	6.61	55.42	47.35	14.12	124.61	3.24
81	E11_Aa	NovelBoundary	1	4.27	15.42	33.21	58.44	11.53	119.98	9.10
82	ER11a	ExonRegion	0	3.69	15.70	46.16	87.52	15.92	90.62	102.14
83	ER11b	ExonRegion	0	0.00	1.21	5.76	12.78	2.63	11.65	8.77
84	IG42	Intergenic	0	3.53	13.04	53.54	59.49	27.52	125.35	10.09
85	IG42_AR1	ActiveIntergenicRegion	0	3.53	13.05	53.58	59.54	27.54	125.45	10.10