Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DDHD2	Gene	0	52.84	20.42	63.58	32.90	64.79	22.86	119.11
2	397166	Transcript	0	3.96	8.01	3.94	6.54	3.39	7.32	11.76
3	319246	Transcript	0	9.38	4.58	13.28	8.47	16.97	6.99	29.83
4	ER1a	ExonRegion	0	2.44	2.86	2.59	4.47	2.38	5.05	6.18
5	E1a_E3a	KnownJunction	0	5.49	13.16	5.29	8.61	4.40	9.59	17.34
6	ER2a	ExonRegion	0	0.00	0.00	0.27	0.49	0.08	0.00	0.20
7	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.70
8	E3_Aa	NovelBoundary	1	0.72	4.26	4.22	10.57	0.00	18.41	1.49
9	ER3a	ExonRegion	0	33.29	31.23	53.78	40.77	37.21	43.47	102.80
10	E3_Da	NovelBoundary	0	0.00	1.63	2.67	4.39	0.00	7.96	0.00
11	E3a_E4a	KnownJunction	0	59.50	30.63	78.53	64.69	63.88	53.12	162.43
12	E4_Aa	NovelBoundary	0	1.03	1.29	12.82	5.39	0.00	10.53	2.77
13	ER4a	ExonRegion	0	63.70	38.53	83.09	54.61	65.65	35.68	173.59
14	E4_Da	NovelBoundary	1	0.97	0.00	5.33	7.45	0.85	9.30	0.00
15	E4a_E5a	KnownJunction	0	61.92	33.47	71.46	47.82	61.25	20.66	156.59
16	ER5a	ExonRegion	0	54.85	30.38	66.07	41.59	70.35	22.49	153.87
17	E5a_E6a	KnownJunction	0	50.64	26.17	74.34	34.22	74.07	19.43	141.80
18	ER6a	ExonRegion	0	49.07	23.55	77.18	31.24	74.91	19.43	138.72
19	E6a_E7a	KnownJunction	0	45.00	14.71	60.04	28.66	82.00	13.83	117.52
20	ER7a	ExonRegion	0	51.99	22.65	88.91	46.05	88.85	18.55	148.64
21	E7a_E8a	KnownJunction	0	53.67	22.83	90.98	44.40	94.29	20.72	154.18
22	E8_Aa	NovelBoundary	0	25.05	1.58	22.26	3.36	10.37	5.84	18.65
23	ER8a	ExonRegion	0	76.24	23.58	103.38	48.45	101.68	25.29	173.58
24	E8a_E9a	KnownJunction	0	89.47	22.15	95.13	55.27	145.99	33.29	175.89
25	I8	Intron	0	4.55	2.11	7.01	5.60	2.83	8.30	3.38
26	I8_SR1	SilentIntronRegion	0	4.87	2.22	7.55	6.04	3.03	9.09	3.46
27	ER9a	ExonRegion	0	77.21	25.31	98.06	46.98	78.35	25.02	154.05
28	E9_Da	NovelBoundary	1	18.84	8.49	36.21	17.47	16.69	7.32	13.64
29	E9a_E10a	KnownJunction	0	28.19	16.16	62.41	29.91	66.46	11.34	132.97
30	E9a_E11a	NovelJunction	1	6.56	4.68	9.76	20.83	2.72	5.74	9.56
31	I9	Intron	0	13.68	4.57	18.73	10.35	9.51	9.87	9.61
32	I9_AR1	ActiveIntronRegion	0	14.59	3.67	20.26	10.76	9.67	10.71	10.32
33	I9_SR1	SilentIntronRegion	0	16.94	11.07	23.73	13.96	12.83	11.98	12.77
34	E10_Aa	NovelBoundary	0	10.73	13.95	14.73	13.95	4.10	16.29	9.63
35	ER10a	ExonRegion	0	37.57	16.76	62.11	26.70	61.86	16.12	133.09
36	E10_Da	NovelBoundary	1	10.16	12.64	26.99	5.47	5.09	10.61	4.97
37	E10a_E11a	KnownJunction	0	48.78	11.45	63.53	25.25	61.21	12.65	121.32
38	I10	Intron	0	7.27	2.37	11.72	4.23	3.12	9.18	3.05
39	I10_SR1	SilentIntronRegion	0	7.23	2.85	11.61	4.19	3.30	10.13	2.61
40	E11_Aa	NovelBoundary	1	4.46	1.08	19.37	1.68	1.06	4.05	7.12
41	ER11a	ExonRegion	0	51.94	18.90	63.96	40.32	60.67	16.60	138.59
42	E11a_E12a	KnownJunction	0	53.89	24.77	63.14	47.84	89.19	15.87	137.83
43	E12_Aa	NovelBoundary	1	1.72	0.00	8.41	2.47	4.29	7.91	0.69
44	ER12a	ExonRegion	0	77.54	27.54	102.67	34.24	83.15	15.22	160.90
45	E12a_E13a	KnownJunction	0	73.62	23.17	91.02	21.40	78.73	21.20	133.64
46	ER13a	ExonRegion	0	103.50	29.42	115.28	35.28	88.82	26.87	161.44
47	E13a_E14a	KnownJunction	0	100.87	45.58	129.35	30.50	133.57	28.51	174.33
48	ER14a	ExonRegion	0	87.07	36.63	112.77	42.51	88.05	37.40	171.01
49	E14a_E15a	KnownJunction	0	68.23	34.47	82.21	32.29	72.89	32.86	148.01
50	ER15a	ExonRegion	0	58.68	31.15	86.67	43.45	80.61	35.67	182.61
51	E15a_E16a	KnownJunction	0	45.16	27.82	70.04	52.15	53.00	25.92	171.60
52	ER16a	ExonRegion	0	55.13	27.67	79.55	44.87	75.67	29.96	185.68
53	E16a_E17a	KnownJunction	0	63.59	41.46	90.52	32.43	108.97	19.54	198.91
54	E17_Aa	NovelBoundary	1	0.00	1.52	6.52	4.50	0.00	11.04	0.89
55	ER17a	ExonRegion	0	79.20	29.00	91.38	45.37	107.61	31.65	220.17
56	E17_Da	NovelBoundary	1	5.61	1.63	6.57	8.10	0.99	11.44	4.03
57	E17a_E18a	KnownJunction	0	124.17	31.16	122.51	49.22	167.27	26.37	263.53
58	ER18a	ExonRegion	0	113.90	37.47	109.50	53.60	119.19	31.32	259.97
59	E18a_E19a	KnownJunction	0	107.32	34.73	90.69	39.93	88.29	22.32	135.95
60	E19_Aa	NovelBoundary	1	1.44	0.00	6.84	5.63	5.97	10.43	13.94
61	ER19a	ExonRegion	0	82.56	19.35	74.41	34.82	87.19	21.62	111.44
62	E19_Da	KnownBoundary	0	30.44	7.64	49.45	13.95	49.49	16.13	73.82
63	ER19b	ExonRegion	0	28.15	13.73	39.58	24.91	49.64	20.96	88.58