Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MTMR7	Gene	0	8.70	4.94	10.49	3.77	27.33	3.78	8.51
2	180173	Transcript	0	0.39	3.09	0.57	0.00	19.03	0.00	0.00
3	398099	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	ER1a	ExonRegion	0	0.12	2.16	0.31	0.00	12.49	0.00	0.00
5	E1a_E3a	KnownJunction	0	0.67	4.02	0.83	0.00	25.57	0.00	0.00
6	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER3a	ExonRegion	0	1.50	2.62	0.27	0.00	10.30	0.76	0.00
8	E3a_E4a	KnownJunction	0	1.77	7.80	0.00	0.00	15.40	0.00	0.00
9	ER4a	ExonRegion	0	2.40	2.82	0.57	0.00	27.00	0.00	0.00
10	E4a_E5a	KnownJunction	0	1.75	1.02	1.78	0.00	19.59	0.00	0.00
11	ER5a	ExonRegion	0	1.47	0.68	0.63	0.00	18.57	0.00	0.00
12	E5a_E6a	KnownJunction	0	0.00	0.00	1.70	0.00	23.26	0.00	0.00
13	ER6a	ExonRegion	0	0.60	1.04	1.16	0.00	21.70	0.72	0.00
14	E6a_E7a	KnownJunction	0	0.00	1.63	0.85	0.00	7.68	0.00	0.00
15	ER7a	ExonRegion	0	0.00	1.02	0.34	0.70	15.75	0.69	0.00
16	E7a_E8a	KnownJunction	0	0.00	0.00	1.42	0.00	11.04	0.00	0.00
17	I7	Intron	0	2.80	2.99	6.56	5.25	1.42	8.62	0.25
18	I7_SR3	SilentIntronRegion	0	4.96	5.11	13.24	9.89	1.74	16.22	0.52
19	E8_Aa	NovelBoundary	1	8.75	11.69	37.20	19.99	1.01	30.39	1.52
20	ER8a	ExonRegion	1	10.56	6.29	20.60	15.54	17.07	11.16	0.41
21	E8_Da	NovelBoundary	1	13.07	7.72	43.05	26.41	0.97	24.41	0.86
22	E8a_E9a	KnownJunction	0	3.10	1.13	1.42	0.00	25.20	0.00	0.00
23	I8_SR1	SilentIntronRegion	0	5.31	5.33	9.03	7.35	1.35	9.32	0.63
24	I8_AR1	ActiveIntronRegion	0	2.98	4.05	10.12	5.30	2.67	4.38	1.93
25	I8_AR3	ActiveIntronRegion	0	7.78	4.80	13.37	5.64	1.30	9.66	1.85
26	E9_Aa	NovelBoundary	0	7.96	3.81	0.75	2.87	2.07	7.96	4.46
27	ER9a	ExonRegion	0	3.72	3.58	4.32	1.13	23.57	3.39	3.23
28	E9a_E10a	KnownJunction	0	1.47	2.60	0.68	1.49	22.59	0.00	0.00
29	I9	Intron	0	3.72	3.87	3.02	2.33	0.97	8.24	3.96
30	I9_AR1	ActiveIntronRegion	0	6.95	6.86	2.89	5.53	0.39	16.43	6.76
31	I9_SR2	SilentIntronRegion	1	9.50	8.03	2.31	5.35	1.54	11.72	7.68
32	E10_Aa	NovelBoundary	0	9.88	10.56	5.04	8.56	0.00	2.28	4.76
33	ER10a	ExonRegion	0	6.95	6.32	1.28	3.52	27.52	2.96	3.22
34	E10_Da	NovelBoundary	0	2.05	7.62	0.78	2.82	1.15	2.68	4.37
35	E10a_E11a	KnownJunction	0	1.65	3.10	0.00	0.00	15.54	0.00	0.00
36	ER11a	ExonRegion	0	0.71	1.68	0.00	0.02	24.17	0.00	0.05
37	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	30.89	0.00	0.00
38	I11_AR1	ActiveIntronRegion	1	11.83	2.85	7.34	1.43	1.69	1.14	8.10
39	E12_Aa	NovelBoundary	0	8.73	8.59	6.04	2.57	1.98	1.55	12.75
40	ER12a	ExonRegion	0	7.90	4.30	7.89	2.81	34.84	4.64	6.33
41	E12_Da	NovelBoundary	0	10.87	4.28	7.47	1.19	1.01	4.10	14.35
42	E12a_E13a	KnownJunction	0	0.93	1.63	0.89	0.00	35.89	0.00	0.00
43	I12	Intron	0	8.92	5.06	8.62	2.27	2.50	4.26	8.26
44	I12_SR1	SilentIntronRegion	0	9.02	3.46	10.45	2.14	1.94	8.45	8.41
45	I12_AR2	ActiveIntronRegion	1	9.52	4.86	8.76	0.84	1.68	2.53	9.00
46	I12_AR3	ActiveIntronRegion	1	8.76	7.74	7.82	6.28	5.48	5.34	7.90
47	E13_Aa	NovelBoundary	0	13.30	3.60	9.69	3.06	5.49	7.75	11.21
48	ER13a	ExonRegion	0	6.49	3.13	5.64	3.33	30.27	2.61	5.43
49	E13_Da	NovelBoundary	0	11.80	2.78	5.93	1.68	0.88	0.00	7.27
50	E13a_E14a	KnownJunction	0	1.75	1.18	1.32	0.00	30.01	0.00	0.00
51	I13	Intron	1	7.79	4.81	6.81	4.30	2.06	4.94	8.06
52	I13_SR1	SilentIntronRegion	1	8.62	5.48	8.04	5.00	2.18	6.05	9.41
53	E14_Aa	NovelBoundary	0	21.90	24.72	22.12	22.27	1.91	65.47	18.87
54	ER14a	ExonRegion	0	7.61	8.59	9.72	6.16	28.27	6.56	8.43
55	E14_Da	NovelBoundary	1	12.12	7.28	9.07	1.63	4.98	1.50	16.62
56	E14a_E15a	KnownJunction	0	1.70	0.00	0.68	1.57	12.33	0.00	0.00
57	I14	Intron	1	10.19	6.80	7.01	1.87	4.75	0.99	9.35
58	I14_AR1	ActiveIntronRegion	1	10.45	7.65	8.19	2.31	5.30	0.75	11.66
59	I14_SR1	SilentIntronRegion	1	10.58	6.54	6.10	1.78	4.15	1.18	8.72
60	E15_Aa	NovelBoundary	0	16.87	7.25	7.80	7.04	1.98	8.58	7.19
61	ER15a	ExonRegion	0	12.13	6.07	15.14	4.58	30.61	4.56	13.25
62	IG21	Intergenic	0	26.63	11.64	36.83	10.84	32.33	15.51	40.19
63	IG21_AR1	ActiveIntergenicRegion	0	26.65	11.65	36.86	10.85	32.36	15.52	40.22