Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ZNF783	Gene	0	9.13	24.81	10.24	31.52	14.39	49.05	29.08
2	378052	Transcript	0	7.10	21.45	9.43	23.12	10.20	41.13	22.73
3	ER1a	ExonRegion	1	1.93	4.80	1.64	3.94	1.46	14.80	1.44
4	E1a_E2a	KnownJunction	0	2.64	6.78	0.59	14.49	1.96	24.82	3.91
5	I1	Intron	0	10.13	11.73	21.55	12.11	4.92	17.95	23.68
6	I1_AR1	ActiveIntronRegion	0	8.38	11.58	19.63	8.94	3.38	17.50	20.76
7	I1_SR1	SilentIntronRegion	0	11.85	11.91	23.46	15.22	6.43	18.42	26.57
8	ER2a	ExonRegion	0	15.96	48.77	18.30	68.40	11.10	62.09	29.52
9	E2a_E3a	KnownJunction	0	10.92	63.92	31.14	71.52	12.77	111.17	39.74
10	ER3a	ExonRegion	0	15.19	64.08	32.31	59.67	18.92	97.76	58.29
11	E3a_E4a	KnownJunction	0	19.79	66.62	29.30	49.31	18.83	78.98	50.20
12	ER4a	ExonRegion	0	14.41	61.03	23.34	53.22	16.00	83.22	46.44
13	E4a_E5a	KnownJunction	0	9.43	43.32	19.93	25.01	10.70	47.54	28.53
14	I4_AR1	ActiveIntronRegion	0	6.00	12.21	8.99	17.61	10.13	16.47	13.52
15	ER5a	ExonRegion	0	12.30	47.29	21.66	36.07	9.96	58.52	49.71
16	E5a_E6a	KnownJunction	1	3.50	18.57	5.22	25.98	3.30	40.25	41.48
17	I5	Intron	0	8.58	15.41	12.80	10.76	9.74	13.81	8.50
18	I5_AR1	ActiveIntronRegion	0	3.76	18.71	6.57	11.41	4.01	10.71	7.06
19	I5_SR2	SilentIntronRegion	0	6.74	35.94	10.96	22.30	8.57	25.37	15.24
20	I5_AR2	ActiveIntronRegion	0	3.59	25.11	9.37	25.15	13.23	18.59	13.38
21	I5_SR3	SilentIntronRegion	0	2.96	18.97	6.72	19.47	8.16	13.86	8.51
22	I5_AR3	ActiveIntronRegion	0	3.46	16.40	5.84	17.38	6.93	11.34	5.61
23	I5_AR4	ActiveIntronRegion	0	26.23	37.05	39.39	28.35	28.39	38.51	22.24
24	ER6a	ExonRegion	0	7.44	20.44	6.07	25.99	13.01	43.81	31.33
25	E6_Da	NovelBoundary	0	54.81	92.79	77.79	185.98	54.15	133.86	99.73
26	E6a_E7a	KnownJunction	0	3.61	3.26	3.06	3.36	14.98	14.12	10.86
27	E6a_E9a	NovelJunction	0	0.00	3.70	0.00	4.52	3.25	15.14	5.33
28	I6	Intron	0	4.37	5.22	4.82	8.01	4.75	9.61	10.66
29	I6_SR1	SilentIntronRegion	0	4.30	4.65	3.99	7.76	4.57	11.66	8.88
30	I6_AR1	ActiveIntronRegion	0	4.41	5.54	5.30	8.16	4.86	8.48	11.68
31	ER7a	ExonRegion	0	2.62	4.50	3.63	5.09	7.26	14.13	16.12
32	E7a_E8a	KnownJunction	0	1.94	1.34	0.85	1.22	3.25	1.18	0.00
33	E7a_E9a	NovelJunction	1	1.84	4.31	2.34	1.06	3.23	15.17	16.31
34	ER8a	ExonRegion	0	2.27	4.35	4.03	9.46	5.10	7.11	4.65
35	E8a_E9a	KnownJunction	0	2.24	1.47	1.47	2.63	4.98	2.89	2.31
36	ER9a	ExonRegion	0	2.50	6.19	3.63	11.03	14.36	21.99	19.85
37	E9_Da	NovelBoundary	0	0.00	6.80	3.16	7.80	2.01	3.24	9.13
38	E9a_E10a	KnownJunction	1	7.33	6.70	5.22	13.76	15.08	36.74	22.33
39	I9	Intron	1	2.03	4.46	1.46	3.17	5.52	7.49	9.54
40	I9_SR1	SilentIntronRegion	1	2.21	4.68	1.39	3.09	5.89	5.83	9.91
41	I9_AR1	ActiveIntronRegion	0	1.40	3.68	1.73	3.47	4.24	13.72	8.29
42	E10_Aa	NovelBoundary	0	2.57	10.06	3.69	4.31	1.73	13.80	8.53
43	ER10a	ExonRegion	0	7.40	10.70	5.65	12.87	16.03	38.89	23.60
44	E10_Da	NovelBoundary	1	0.00	5.60	1.35	0.00	4.17	11.36	11.24
45	E10a_E11a	KnownJunction	1	4.34	13.87	4.70	10.21	5.07	42.56	11.24
46	E10a_E12a	NovelJunction	1	0.00	1.50	0.00	1.68	4.20	23.05	4.57
47	I10	Intron	0	2.40	2.49	2.46	4.74	6.38	11.88	10.31
48	I10_AR1	ActiveIntronRegion	0	2.42	2.51	2.48	4.76	6.43	11.98	10.39
49	E11_Aa	NovelBoundary	0	5.64	6.28	6.19	1.33	16.37	10.45	10.46
50	ER11a	ExonRegion	0	9.75	16.93	10.00	19.49	15.75	30.88	27.48
51	E11_Da	NovelBoundary	0	9.03	11.03	3.99	12.06	11.73	15.01	19.53
52	E11a_E12a	KnownJunction	0	1.59	2.73	0.83	6.07	0.00	6.99	2.24
53	I11	Intron	0	3.00	7.61	3.57	6.25	9.04	10.75	12.08
54	I11_AR1	ActiveIntronRegion	0	3.01	7.65	3.59	6.29	9.08	10.81	12.14
55	E12_Aa	NovelBoundary	0	0.92	7.20	2.07	4.44	2.17	17.82	9.90
56	ER12a	ExonRegion	0	0.58	1.73	0.55	2.65	1.18	3.75	2.74
57	E12_Da	NovelBoundary	0	3.99	15.97	5.42	8.18	10.88	26.24	25.22
58	E12a_E13a	KnownJunction	0	2.67	4.47	0.00	2.55	2.28	0.00	3.40
59	I12	Intron	1	2.15	6.46	2.54	2.98	7.99	18.24	5.63
60	I12_AR1	ActiveIntronRegion	1	2.18	6.55	2.58	3.03	8.09	18.50	5.71
61	E13_Aa	NovelBoundary	1	1.75	14.50	3.87	22.65	7.47	33.85	21.68
62	ER13a	ExonRegion	1	7.46	18.48	4.95	33.15	20.61	59.30	35.17
63	E13_Da	NovelBoundary	1	11.87	9.88	5.33	14.76	12.89	9.94	39.84
64	E13a_E14a	KnownJunction	1	8.14	15.74	5.59	29.66	8.48	95.27	18.85
65	I13	Intron	1	6.00	5.47	6.08	9.62	22.37	14.65	30.14
66	I13_AR1	ActiveIntronRegion	1	6.01	5.48	6.09	9.63	22.39	14.66	30.17
67	E14_Aa	NovelBoundary	0	9.80	10.56	12.59	11.87	35.57	22.51	40.07
68	ER14a	ExonRegion	0	13.74	21.02	11.06	27.39	23.03	71.69	32.31