Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ZNF767	Gene	0	16.71	32.53	32.92	52.30	23.15	41.99	20.24
2	335215	Transcript	0	10.60	23.51	21.41	29.53	13.72	27.11	8.87
3	255998	Transcript	0	0.00	0.08	0.03	0.09	0.00	0.00	0.00
4	378044	Transcript	0	11.82	23.72	28.01	33.79	14.33	33.80	16.01
5	ER1a	ExonRegion	0	0.00	0.37	1.62	1.92	2.34	0.19	0.10
6	ER1b	ExonRegion	0	1.38	16.32	2.03	20.67	2.64	13.19	3.34
7	E1a_E2a	KnownJunction	0	2.24	27.06	6.74	43.56	3.16	26.93	6.09
8	ER2a	ExonRegion	0	9.81	34.72	17.47	54.54	8.40	43.75	13.71
9	E2a_E3a	KnownJunction	0	10.40	33.50	18.67	40.37	9.45	49.85	12.07
10	E2a_E4a	KnownJunction	0	1.84	4.54	3.20	1.27	0.00	1.66	1.50
11	ER3a	ExonRegion	0	13.68	39.99	22.65	54.32	13.58	38.87	14.06
12	E3a_E4a	KnownJunction	0	15.89	43.16	39.66	60.30	11.60	39.32	15.12
13	ER4a	ExonRegion	0	16.47	44.24	35.95	59.07	17.75	56.90	18.50
14	E4a_E7a	KnownJunction	0	10.82	27.77	24.23	31.99	6.09	48.43	12.15
15	E4a_E8a	KnownJunction	0	0.95	5.57	7.54	12.25	0.00	13.11	0.00
16	ER5a	ExonRegion	0	0.00	0.17	0.06	0.17	0.00	0.00	0.00
17	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	I6_SR1	SilentIntronRegion	1	4.85	3.35	3.96	1.54	4.37	1.12	7.51
19	I6_AR1	ActiveIntronRegion	1	8.49	7.35	6.31	2.03	9.68	1.68	9.91
20	I6_SR2	SilentIntronRegion	1	8.45	7.29	6.10	1.43	9.49	0.00	10.89
21	I6_AR3	ActiveIntronRegion	1	7.78	6.59	4.89	1.83	4.78	0.89	8.02
22	I6_SR5	SilentIntronRegion	1	3.59	1.69	3.17	1.72	1.46	2.37	7.52
23	ER7a	ExonRegion	0	17.99	32.07	38.64	45.45	19.93	53.97	24.18
24	E7_Da	NovelBoundary	1	0.00	2.86	2.08	6.72	1.98	0.00	7.72
25	E7a_E8a	KnownJunction	0	12.88	28.40	36.53	48.47	18.51	40.33	21.65
26	I7_AR2	ActiveIntronRegion	0	4.57	5.41	3.82	2.69	8.63	2.55	6.37
27	I7_SR2	SilentIntronRegion	1	5.14	4.82	2.93	0.96	7.19	0.54	9.20
28	E8_Aa	NovelBoundary	0	3.44	5.18	4.20	0.00	12.63	0.00	9.13
29	ER8a	ExonRegion	0	18.76	46.82	48.29	62.93	31.57	76.47	28.59
30	E8_Da	NovelBoundary	1	0.65	3.73	1.35	1.11	18.14	0.00	7.80
31	E8a_E9a	KnownJunction	0	19.48	45.74	43.44	77.70	23.51	84.50	32.93
32	E9_Aa	NovelBoundary	1	2.67	6.07	2.87	0.00	12.29	2.36	8.76
33	ER9a	ExonRegion	0	20.40	51.61	58.48	66.99	31.73	71.76	30.72
34	E9_Da	KnownBoundary	0	15.56	26.06	45.81	30.59	24.64	24.01	12.94
35	E9a_E10a	KnownJunction	0	11.73	23.72	35.60	28.36	13.88	28.46	15.61
36	ER9b	ExonRegion	0	19.87	29.11	45.01	30.50	30.52	32.84	16.42
37	E9_Db	NovelBoundary	0	3.72	4.78	3.59	0.00	4.15	1.66	9.14
38	E9b_E10a	KnownJunction	0	13.80	24.33	26.10	22.76	33.40	34.92	13.17
39	ER10a	ExonRegion	0	23.88	40.72	46.22	56.62	35.30	47.92	24.88
40	E10a_E11a	KnownJunction	0	26.24	19.49	48.90	51.91	32.94	28.33	16.74
41	ER11a	ExonRegion	0	24.73	33.78	51.66	71.13	26.59	48.54	24.85
42	E11_Da	KnownBoundary	1	14.85	16.37	30.41	39.31	23.33	21.65	27.23
43	E11a_E11b	KnownJunction	1	10.23	12.06	10.06	13.84	8.90	7.77	0.00
44	ER11b	ExonRegion	0	16.86	27.95	30.05	45.43	26.42	28.08	20.74
45	E11_Ab	KnownBoundary	0	21.38	30.19	28.96	55.86	44.19	42.80	23.00
46	ER11c	ExonRegion	0	20.79	35.31	37.63	71.61	26.52	57.54	22.18
47	ER11d	ExonRegion	0	0.66	2.43	3.00	3.03	1.16	3.50	1.73