Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AGAP3	Gene	0	34.33	62.53	51.20	66.39	60.21	194.40	114.44
2	335355	Transcript	0	0.00	0.00	0.50	0.00	0.00	0.00	0.00
3	397238	Transcript	0	0	0	0	0	0	0	0
4	397232	Transcript	1	1.57	0.00	1.94	1.68	3.92	5.28	16.29
5	335367	Transcript	0	24.03	38.45	41.71	35.81	11.43	82.58	37.31
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E1_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	2.14	0.67
8	E1a_E1b	KnownJunction	0	0.00	0.00	0.50	0.00	0.00	0.00	0.00
9	ER1b	ExonRegion	0	0.69	5.49	0.41	2.97	2.00	17.39	2.71
10	E1_Ab	KnownBoundary	0	3.86	25.46	4.18	19.34	11.66	95.97	13.59
11	ER1c	ExonRegion	0	20.26	81.48	25.23	56.52	46.28	296.16	29.71
12	E1b_E3a	KnownJunction	1	38.00	114.57	68.49	70.84	50.67	415.85	46.15
13	E1b_E7a	NovelJunction	1	0.00	2.39	0.00	9.67	0.00	40.60	0.00
14	E1b_E11a	NovelJunction	1	0.00	0.00	0.70	2.28	0.00	10.72	0.00
15	ER2a	ExonRegion	0	0.34	1.73	1.10	3.30	0.12	0.24	2.90
16	E2a_E3a	KnownJunction	1	5.22	11.09	31.72	17.69	1.13	1.39	46.00
17	ER3a	ExonRegion	0	44.78	150.35	90.22	137.99	44.57	474.81	116.29
18	E3a_E4a	KnownJunction	0	53.52	144.13	97.43	172.57	69.32	514.96	153.00
19	ER4a	ExonRegion	0	87.15	159.80	140.56	153.08	107.80	512.56	192.12
20	E4a_E5a	KnownJunction	0	102.98	134.01	179.73	161.03	93.43	488.40	219.17
21	ER5a	ExonRegion	0	111.46	179.78	213.64	201.22	141.78	573.55	336.52
22	E5a_E6a	KnownJunction	0	110.60	175.76	209.40	186.63	150.00	559.31	356.87
23	E5a_E7a	NovelJunction	1	1.03	0.00	1.67	5.85	0.97	31.68	0.00
24	ER6a	ExonRegion	0	140.33	197.62	241.67	198.28	188.57	562.32	399.66
25	E6a_E7a	KnownJunction	0	124.07	190.86	221.96	199.42	198.51	579.68	426.76
26	ER7a	ExonRegion	0	129.94	185.27	204.81	202.65	216.42	546.80	429.80
27	E7a_E8a	KnownJunction	0	131.48	187.00	200.31	202.89	187.44	556.68	440.06
28	ER8a	ExonRegion	0	71.22	165.03	100.88	164.50	112.68	462.70	242.98
29	E8a_E9a	KnownJunction	0	52.91	111.36	56.25	135.97	61.92	364.69	210.99
30	E8a_E10a	NovelJunction	1	6.26	3.65	6.19	14.28	0.00	99.86	4.97
31	E8a_E11a	NovelJunction	0	0.00	2.13	1.42	4.04	0.00	18.20	3.81
32	ER9a	ExonRegion	0	77.48	136.03	104.23	145.38	154.99	347.47	246.01
33	E9a_E10a	KnownJunction	0	67.34	90.79	96.14	56.21	32.02	165.78	70.04
34	E9a_E11a	KnownJunction	1	35.35	37.65	31.33	36.87	89.08	131.61	191.44
35	ER10a	ExonRegion	0	23.20	50.19	37.88	66.05	12.43	162.92	30.30
36	ER11a	ExonRegion	0	32.39	66.88	45.71	50.75	94.80	147.11	196.39
37	E11a_E12a	KnownJunction	0	35.57	71.67	66.28	67.51	89.70	166.32	212.76
38	ER12a	ExonRegion	0	43.61	87.74	64.73	76.67	121.38	225.96	259.72
39	E12a_E13a	KnownJunction	0	33.88	70.91	52.87	72.14	86.75	179.45	171.45
40	E13_Aa	NovelBoundary	0	11.27	1.63	20.18	0.00	26.79	1.63	2.19
41	ER13a	ExonRegion	0	25.14	49.50	31.77	52.78	60.75	119.16	108.91
42	E13a_E14a	KnownJunction	0	19.74	27.01	24.95	18.80	28.72	43.87	62.60
43	E13a_E15a	KnownJunction	1	1.57	0.00	1.94	1.68	3.92	5.28	16.29
44	E13a_E16a	NovelJunction	1	3.55	11.61	8.74	17.77	22.73	64.00	48.37
45	I13_SR3	SilentIntronRegion	1	8.40	4.83	8.30	3.84	6.20	12.16	26.09
46	I13_AR3	ActiveIntronRegion	0	9.38	7.52	9.37	6.51	5.55	16.76	23.08
47	ER14a	ExonRegion	0	21.84	28.84	25.28	26.75	33.82	61.63	69.55
48	E14a_E15a	KnownJunction	0	27.00	27.22	30.52	20.43	26.14	95.89	77.28
49	ER15a	ExonRegion	0	28.67	34.04	33.01	30.44	47.36	94.64	98.60
50	E15a_E16a	KnownJunction	0	30.63	29.77	19.01	24.25	57.98	73.78	89.43
51	ER16a	ExonRegion	0	31.64	59.14	33.21	50.01	70.76	150.07	135.99
52	E16a_E17a	KnownJunction	0	39.91	68.04	47.75	67.40	63.23	166.02	163.26
53	ER17a	ExonRegion	0	38.39	57.71	45.38	51.76	81.24	183.48	178.38
54	E17a_E18a	KnownJunction	0	32.70	51.28	42.41	65.13	84.12	189.05	186.80
55	ER18a	ExonRegion	0	26.38	43.65	42.15	47.18	85.48	174.84	150.23
56	E18a_E19a	KnownJunction	0	33.61	52.57	44.09	56.62	92.30	211.93	140.92
57	E19_Aa	NovelBoundary	0	13.02	1.16	12.40	0.00	3.32	0.00	6.12
58	ER19a	ExonRegion	0	27.69	51.78	40.02	57.76	75.97	185.66	139.86
59	E19a_E20a	KnownJunction	0	28.57	50.94	26.25	53.80	56.18	179.05	105.72
60	ER20a	ExonRegion	0	39.30	66.42	50.36	75.66	88.77	249.45	150.29
61	ER20b	ExonRegion	0	2.31	3.95	2.37	2.49	9.11	11.03	8.26