Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DPP6	Gene	0	0.15	0.10	3.82	0.82	14.22	0.14	0.02
2	404039	Transcript	0	0.00	0.00	0.00	0.00	1.83	0.00	0.00
3	406326	Transcript	0	0.42	0.08	1.49	0.59	0.63	0.59	0.00
4	252510	Transcript	0	0	0	0	0	0	0	0
5	332007	Transcript	0	0.00	0.00	0.30	0.00	6.25	0.00	0.00
6	377770	Transcript	0	0.00	0.02	0.33	0.05	2.17	0.00	0.00
7	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.34	0.00	0.00
8	E1a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	1.08	0.00	0.00
9	E2_Aa	NovelBoundary	0	3.02	0.00	11.83	3.28	3.30	4.96	0.00
10	ER2a	ExonRegion	0	1.27	0.23	3.39	1.77	0.85	1.76	0.00
11	E2_Ab	KnownBoundary	0	0.00	0.00	3.05	2.63	1.08	2.30	0.00
12	ER2b	ExonRegion	0	0.00	0.00	1.15	0.58	0.69	0.52	0.00
13	E2a_E4a	KnownJunction	0	0.00	0.00	1.64	0.00	4.22	0.00	0.00
14	I2_SR3	SilentIntronRegion	0	5.10	1.11	9.74	1.71	1.50	0.34	0.00
15	I2_AR8	ActiveIntronRegion	0	8.33	1.21	11.78	0.29	0.19	1.41	0.00
16	ER3a	ExonRegion	0	0.00	0.00	0.59	0.00	4.07	0.00	0.00
17	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	8.44	0.00	0.00
18	ER4a	ExonRegion	0	0.51	0.00	3.60	1.94	12.75	0.00	0.00
19	E4a_E5a	KnownJunction	0	0.00	0.00	6.94	3.22	16.74	0.00	0.00
20	ER5a	ExonRegion	0	1.42	0.00	9.48	3.45	17.96	0.00	0.00
21	E5a_E6a	KnownJunction	0	1.03	0.00	11.11	0.00	12.01	0.00	0.00
22	ER6a	ExonRegion	0	1.17	0.00	13.43	2.13	24.34	0.00	0.00
23	E6a_E7a	KnownJunction	0	2.22	0.00	16.25	3.36	26.86	0.00	0.00
24	ER7a	ExonRegion	0	1.31	0.00	18.69	1.16	26.40	0.00	0.00
25	E7a_E8a	KnownJunction	0	0.00	0.00	0.89	0.00	0.00	0.00	0.00
26	E7a_E9a	KnownJunction	0	0.00	0.00	11.28	0.00	26.44	0.00	0.00
27	ER8a	ExonRegion	0	0.00	0.00	0.18	0.00	1.05	0.00	0.00
28	ER9a	ExonRegion	0	0.00	0.00	10.71	2.14	22.52	0.00	0.00
29	E9a_E10a	KnownJunction	0	0.00	0.00	9.24	3.12	17.68	0.00	0.00
30	ER10a	ExonRegion	0	0.03	0.00	14.14	2.63	27.96	0.00	0.00
31	E10a_E11a	KnownJunction	0	0.00	0.00	15.79	4.01	47.93	0.00	0.00
32	ER11a	ExonRegion	0	0.95	0.00	11.90	2.97	37.60	0.00	0.00
33	E11a_E12a	KnownJunction	0	0.00	0.00	6.62	2.93	25.08	0.00	0.00
34	ER12a	ExonRegion	0	0.36	0.00	7.77	2.89	30.13	0.00	0.00
35	E12a_E13a	KnownJunction	0	0.00	0.00	6.61	0.00	38.43	0.00	0.00
36	ER13a	ExonRegion	0	0.29	0.00	6.68	0.74	30.77	0.00	0.00
37	E13a_E14a	KnownJunction	0	1.03	0.00	7.65	1.41	27.36	0.00	0.00
38	ER14a	ExonRegion	0	0.24	1.13	6.62	2.61	37.63	0.00	0.00
39	E14a_E15a	KnownJunction	0	0.00	1.63	6.50	0.00	29.21	0.00	0.00
40	ER15a	ExonRegion	0	0.61	1.15	7.07	2.46	34.49	0.00	0.00
41	E15a_E16a	KnownJunction	0	1.03	0.00	4.45	3.14	32.16	0.00	0.00
42	ER16a	ExonRegion	0	0.32	2.56	5.98	0.70	44.32	0.00	0.00
43	E16a_E17a	KnownJunction	0	0.00	0.00	3.48	0.00	48.41	0.00	0.00
44	ER17a	ExonRegion	0	0.36	0.45	5.43	0.96	38.74	0.00	0.00
45	E17a_E18a	KnownJunction	0	1.03	1.63	3.58	3.06	48.57	0.00	0.00
46	ER18a	ExonRegion	0	0.53	1.06	6.35	1.97	38.00	0.00	0.00
47	E18a_E19a	KnownJunction	0	0.00	0.00	7.66	0.00	38.59	0.00	0.00
48	ER19a	ExonRegion	0	0.35	0.00	6.41	2.11	41.07	0.00	0.37
49	E19a_E20a	KnownJunction	0	0.88	0.00	8.21	1.68	46.15	0.00	0.60
50	ER20a	ExonRegion	0	0.35	0.00	9.31	1.90	42.84	0.00	0.15
51	E20a_E21a	KnownJunction	0	0.00	0.00	7.53	1.68	39.19	0.00	0.00
52	ER21a	ExonRegion	0	0.00	0.00	10.40	2.44	40.26	0.00	0.33
53	E21a_E22a	KnownJunction	0	0.00	0.00	6.50	1.03	28.17	0.00	0.83
54	ER22a	ExonRegion	0	0.00	0.00	4.44	2.14	20.78	0.00	0.26
55	E22a_E23a	KnownJunction	0	0.00	0.00	3.65	1.52	14.18	0.00	0.00
56	ER23a	ExonRegion	0	0.00	0.00	4.03	0.16	20.03	0.00	0.00
57	E23a_E24a	KnownJunction	0	0.00	0.00	5.82	0.00	33.80	0.00	0.00
58	ER24a	ExonRegion	0	0.00	1.10	5.79	0.00	36.90	0.00	0.00
59	E24a_E25b	KnownJunction	0	0.00	1.50	4.04	0.00	19.13	0.00	0.00
60	ER25a	ExonRegion	0	0.00	0.04	0.13	0.09	1.66	0.00	0.00
61	E25_Ab	KnownBoundary	0	0.00	0.00	0.69	0.00	1.01	0.00	0.00
62	ER25b	ExonRegion	0	0.00	1.03	10.35	0.78	28.88	0.00	0.00
63	E25a_E26a	KnownJunction	0	0.00	1.00	12.00	1.03	23.17	0.00	0.00
64	ER26a	ExonRegion	0	0.00	0.24	11.88	0.25	27.03	0.00	0.00
65	E26_Da	NovelBoundary	0	0.00	0.00	9.01	0.00	24.37	0.00	0.00
66	E26a_E29b	KnownJunction	0	0.00	0.00	0.53	0.00	2.67	0.00	0.00
67	E26b_E27a	KnownJunction	0	0.00	0.00	8.87	0.00	43.09	0.00	0.00
68	ER26b	ExonRegion	0	0.00	0.00	9.17	0.00	37.83	0.00	0.00
69	ER27a	ExonRegion	0	0.00	0.00	11.07	1.49	55.11	0.00	0.00
70	E27a_E28a	KnownJunction	0	0.00	0.00	15.36	2.84	47.40	0.00	0.00
71	ER28a	ExonRegion	0	0.00	0.00	17.07	3.64	42.15	0.00	0.00
72	E28a_E29a	KnownJunction	0	0.00	0.00	17.22	3.36	27.25	0.00	0.00
73	ER29a	ExonRegion	0	0.00	0.00	5.37	1.35	18.94	0.52	0.00
74	E29_Ab	KnownBoundary	0	0.00	0.00	1.25	1.03	11.69	0.00	0.00
75	ER29b	ExonRegion	0	0.00	0.00	5.64	2.61	23.71	0.58	0.00
76	E29_Da	KnownBoundary	0	0.00	0.00	5.48	3.93	34.93	0.00	0.00
77	ER29c	ExonRegion	0	0.00	0.00	6.60	0.70	26.71	0.00	0.04
78	ER29d	ExonRegion	0	0.00	0.00	0.00	0.00	4.05	0.00	0.00