Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FAM62B	Gene	0	322.27	251.38	128.54	154.97	208.14	196.45	277.06
2	251527	Transcript	0	475.28	486.04	204.67	269.09	274.32	328.97	457.74
3	275418	Transcript	1	46.92	13.69	12.18	6.19	23.10	3.89	4.46
4	377650	Transcript	0	135.19	137.69	39.89	113.86	0.00	119.93	148.20
5	ER1a	ExonRegion	0	34.23	112.58	12.04	44.93	11.69	69.51	41.75
6	E1a_E2a	KnownJunction	0	136.04	292.77	49.15	138.19	77.46	199.20	128.70
7	ER2a	ExonRegion	0	239.35	374.52	87.58	173.71	98.07	269.28	202.41
8	E2a_E3a	KnownJunction	0	260.66	337.59	100.62	170.78	119.74	272.34	196.70
9	ER3a	ExonRegion	0	450.58	435.09	133.84	211.85	196.08	317.76	277.00
10	E3a_E4a	KnownJunction	0	644.18	450.84	182.92	272.10	278.64	338.72	302.38
11	ER4a	ExonRegion	1	960.56	575.53	282.33	297.93	379.14	377.62	394.79
12	E4a_E5a	KnownJunction	1	1247.37	623.68	337.63	334.60	356.03	395.30	470.29
13	E5_Aa	NovelBoundary	1	544.83	15.58	144.03	6.50	0.99	7.21	0.66
14	ER5a	ExonRegion	0	1148.60	625.40	341.95	361.11	392.64	428.48	514.61
15	E5a_E6a	KnownJunction	0	924.34	550.60	314.58	272.10	458.20	419.58	460.20
16	ER6a	ExonRegion	0	774.13	447.85	280.31	243.20	377.60	311.58	467.69
17	E6a_E7a	KnownJunction	0	594.61	354.03	211.13	183.11	249.92	199.71	392.38
18	E6a_E8a	NovelJunction	0	14.15	14.71	1.81	12.81	0.00	16.24	0.00
19	E6a_E9a	NovelJunction	0	0.72	26.93	0.79	7.64	0.00	10.75	1.43
20	I6_AR3	ActiveIntronRegion	1	73.55	83.42	33.53	19.28	18.29	25.18	16.39
21	I6_AR4	ActiveIntronRegion	0	74.11	75.86	40.57	23.42	16.11	28.47	17.09
22	I6_AR5	ActiveIntronRegion	0	67.82	67.72	41.73	22.17	15.74	26.17	15.37
23	I6_SR2	SilentIntronRegion	1	57.34	59.16	30.41	10.69	16.89	22.86	9.58
24	ER7a	ExonRegion	0	573.90	375.72	236.60	238.57	298.13	244.19	476.03
25	E7a_E8a	KnownJunction	0	476.43	354.32	222.47	253.63	300.01	263.01	455.61
26	ER8a	ExonRegion	0	426.32	495.06	225.57	286.98	273.25	283.87	538.89
27	E8a_E9a	KnownJunction	0	399.54	518.41	206.77	275.81	260.01	280.92	487.44
28	ER9a	ExonRegion	0	386.61	595.13	214.22	300.05	246.31	335.70	553.52
29	E9a_E10a	KnownJunction	0	396.35	578.34	231.39	318.94	302.18	343.17	573.56
30	ER10a	ExonRegion	0	375.15	626.35	230.19	343.49	325.95	374.42	638.13
31	E10a_E11a	KnownJunction	0	335.15	581.99	210.11	297.81	372.30	354.83	582.40
32	ER11a	ExonRegion	0	444.09	661.73	250.56	346.02	333.03	427.45	664.91
33	E11a_E12a	KnownJunction	0	446.76	627.07	227.84	327.83	285.86	415.18	603.63
34	ER12a	ExonRegion	0	426.93	681.51	246.92	371.53	316.04	416.88	709.47
35	E12_Da	NovelBoundary	1	161.79	4.70	82.79	4.58	0.00	1.29	1.99
36	E12a_E13a	KnownJunction	0	388.12	639.74	209.71	309.90	316.54	393.74	670.51
37	ER13a	ExonRegion	0	334.60	581.95	224.19	340.25	326.39	431.59	579.64
38	E13a_E14a	KnownJunction	0	116.88	215.50	144.78	284.05	145.74	348.58	299.60
39	E13a_E15a	NovelJunction	1	2.90	48.08	10.79	33.89	3.30	54.89	29.48
40	I13_AR1	ActiveIntronRegion	0	77.88	49.55	15.36	9.10	37.23	15.28	13.82
41	I13_AR2	ActiveIntronRegion	0	62.40	40.66	11.24	8.31	42.44	9.73	7.65
42	I13_SR4	SilentIntronRegion	1	64.65	23.65	13.89	9.27	10.25	7.55	5.44
43	I13_AR5	ActiveIntronRegion	1	64.69	24.60	15.29	10.72	73.97	3.95	7.92
44	I13_SR6	SilentIntronRegion	1	66.44	21.80	15.76	4.31	13.53	5.37	4.76
45	ER14a	ExonRegion	0	252.59	351.81	164.06	257.46	251.32	331.00	459.60
46	E14a_E15a	KnownJunction	0	392.28	486.07	204.17	294.05	323.82	355.15	584.51
47	ER15a	ExonRegion	0	395.51	512.80	203.71	280.87	343.89	364.81	559.07
48	E15a_E16c	KnownJunction	0	276.44	517.34	152.76	241.79	213.68	305.57	446.88
49	E16_Aa	NovelBoundary	1	97.39	27.32	14.93	2.55	19.09	2.76	3.94
50	ER16a	ExonRegion	0	46.92	13.69	12.18	6.19	23.10	3.89	4.46
51	E16_Ab	KnownBoundary	0	15.20	10.80	7.33	4.82	11.76	6.89	2.36
52	E16_Ac	KnownBoundary	0	18.84	16.26	4.99	3.20	8.58	1.66	1.65
53	ER16b	ExonRegion	0	27.95	36.20	14.09	14.34	17.71	15.61	17.40
54	ER16c	ExonRegion	0	294.06	517.22	138.14	256.50	206.22	319.52	421.06
55	E16a_E17a	KnownJunction	0	374.61	574.61	161.57	296.02	312.39	386.00	478.21
56	ER17a	ExonRegion	0	297.70	419.47	112.96	204.72	185.32	254.02	350.62
57	E17a_E18a	KnownJunction	0	218.65	261.90	76.58	106.22	190.26	133.92	304.34
58	I17	Intron	0	59.67	55.45	17.98	40.29	14.03	37.27	7.33
59	I17_SR1	SilentIntronRegion	1	65.87	67.66	20.98	50.14	16.32	46.23	9.03
60	I17_SR4	SilentIntronRegion	1	65.52	22.89	13.59	7.06	10.61	9.84	3.19
61	ER18a	ExonRegion	0	317.63	332.30	102.35	176.80	266.56	228.86	383.60
62	E18_Da	KnownBoundary	0	418.95	381.80	121.89	240.76	315.18	309.43	403.80
63	E18a_E18b	KnownJunction	0	135.19	137.69	39.89	113.86	0.00	119.93	148.20
64	ER18b	ExonRegion	0	442.88	378.63	125.99	236.09	322.73	300.98	421.85
65	E18b_E19a	KnownJunction	0	437.64	370.14	111.56	205.30	332.17	258.91	381.42
66	E18b_E20a	NovelJunction	1	0.00	14.95	0.00	1.65	0.00	0.00	0.00
67	ER18c	ExonRegion	0	450.52	380.75	121.95	242.77	336.79	292.68	431.32
68	I18	Intron	0	40.17	57.97	10.89	23.23	8.30	30.28	4.43
69	I18_SR1	SilentIntronRegion	0	41.33	54.87	15.45	17.27	7.90	27.80	6.23
70	I18_AR2	ActiveIntronRegion	0	40.86	68.72	10.27	32.06	7.95	38.51	4.12
71	I18_SR2	SilentIntronRegion	1	65.19	40.90	16.14	17.87	18.63	22.89	4.05
72	ER19a	ExonRegion	0	523.22	460.79	166.26	293.45	301.53	395.68	515.44
73	E19a_E20a	KnownJunction	0	568.03	428.41	173.44	307.05	464.58	395.14	554.57
74	ER20a	ExonRegion	0	365.59	393.04	117.74	288.08	335.39	392.27	417.95
75	E20a_E21a	KnownJunction	0	210.46	345.50	75.92	195.54	225.69	281.56	258.51
76	ER21a	ExonRegion	0	324.79	337.03	93.48	211.93	225.71	269.82	314.68
77	E21a_E22a	KnownJunction	0	394.97	244.56	100.33	203.40	243.67	208.80	272.57
78	ER22a	ExonRegion	0	710.24	251.17	212.39	198.23	335.34	284.56	366.43
79	E22_Da	KnownBoundary	0	428.56	108.92	200.60	59.09	191.02	128.80	238.04
80	ER22b	ExonRegion	0	249.75	134.56	113.14	104.78	204.86	130.63	208.20
81	IG8	Intergenic	0	11.19	7.72	1.76	4.12	0.79	7.04	4.25
82	IG8_SR2	SilentIntergenicRegion	0	15.63	9.56	3.17	6.14	2.00	8.51	5.41
83	IG8_AR1	ActiveIntergenicRegion	0	12.58	22.05	2.46	9.28	1.21	22.14	8.50
84	IG8_SR1	SilentIntergenicRegion	0	9.75	5.50	1.27	2.93	0.38	4.84	3.42