Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RNF32	Gene	0	4.17	3.89	7.09	6.97	5.37	3.64	11.31
2	392747	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	317955	Transcript	0	0.91	0.40	0.49	0.01	0.25	0.93	2.77
4	405335	Transcript	0	0.21	0.48	0.89	0.73	0.27	0.63	1.39
5	311822	Transcript	0	1.04	2.60	3.28	2.68	1.63	0.83	3.31
6	392740	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	392741	Transcript	0	0.29	0.00	0.00	0.00	0.00	0.00	0.51
8	343665	Transcript	0	0.90	0.00	0.00	0.55	0.00	0.00	1.27
9	392743	Transcript	0	0	0	0	0	0	0	0
10	404282	Transcript	0	1.60	0.00	0.00	0.00	0.00	0.00	6.02
11	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E2a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	I2	Intron	0	4.21	2.09	5.50	2.05	10.38	0.67	3.40
15	I2_AR2	ActiveIntronRegion	0	6.33	3.43	8.19	3.09	20.39	0.84	5.72
16	ER3a	ExonRegion	0	0.23	0.81	0.25	0.02	0.50	0.33	1.80
17	E3a_E5a	KnownJunction	0	1.60	0.00	0.72	0.00	0.00	1.53	3.74
18	ER3b	ExonRegion	0	1.05	1.21	1.13	2.45	0.09	1.82	5.77
19	ER3c	ExonRegion	0	0.00	1.48	1.25	2.70	0.00	1.95	1.89
20	E3_Ac	KnownBoundary	0	1.03	2.15	1.51	1.54	0.00	2.92	1.61
21	ER3d	ExonRegion	0	0.00	2.89	1.76	1.53	0.00	0.89	3.05
22	E3_Db	KnownBoundary	0	0.00	2.60	1.68	1.35	0.00	1.47	1.59
23	E3b_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.89
24	ER3e	ExonRegion	0	0.00	0.92	0.53	0.13	0.00	1.23	0.69
25	E3c_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER4a	ExonRegion	0	1.05	0.01	2.10	0.82	0.43	0.00	2.24
27	E4a_E5a	KnownJunction	0	0.00	0.00	0.57	0.00	0.90	0.00	2.11
28	ER5a	ExonRegion	0	5.29	2.88	4.12	1.63	7.49	0.41	11.77
29	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER5b	ExonRegion	0	5.54	3.64	3.53	2.05	6.77	0.00	14.07
31	E6_Aa	NovelBoundary	0	3.10	7.51	7.79	6.39	0.00	2.57	3.47
32	ER6a	ExonRegion	0	5.50	4.44	6.77	2.68	8.79	1.07	24.33
33	E6a_E8a	KnownJunction	0	0.78	1.63	1.60	0.00	6.75	0.00	15.42
34	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER8a	ExonRegion	0	5.77	1.87	2.86	3.81	5.84	0.65	17.58
36	E8a_E9a	KnownJunction	0	1.95	1.60	0.00	0.00	6.66	0.00	8.13
37	E8b_E10b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER8b	ExonRegion	0	1.81	0.00	0.00	1.10	0.00	0.00	2.54
39	E9_Aa	NovelBoundary	0	4.37	6.17	11.04	18.99	0.90	15.54	0.82
40	ER9a	ExonRegion	0	2.10	1.21	1.38	0.04	4.61	0.00	10.12
41	E9_Da	NovelBoundary	0	5.66	1.63	15.45	23.19	0.95	11.90	3.14
42	E9a_E10a	KnownJunction	0	0.72	0.00	1.48	0.00	3.37	0.00	8.40
43	I9	Intron	0	6.95	2.66	13.73	7.86	1.34	6.71	3.60
44	I9_AR1	ActiveIntronRegion	0	6.98	2.67	13.78	7.89	1.34	6.74	3.61
45	E10_Aa	NovelBoundary	0	7.59	1.18	11.11	7.40	0.00	5.33	2.88
46	ER10a	ExonRegion	0	3.60	2.05	8.56	7.11	5.56	1.51	8.33
47	E10_Ab	KnownBoundary	0	3.86	3.18	12.85	13.22	6.41	3.06	6.02
48	ER10b	ExonRegion	0	4.69	2.04	5.90	6.45	1.97	1.48	5.99
49	E10a_E11a	KnownJunction	0	5.19	1.63	1.34	0.00	0.00	0.00	7.35
50	E11_Aa	NovelBoundary	0	2.70	3.26	7.93	8.37	0.00	7.93	6.31
51	ER11a	ExonRegion	0	6.46	2.18	6.03	5.99	4.57	7.33	10.90
52	E11_Da	NovelBoundary	0	6.36	3.07	2.37	7.42	1.11	1.66	14.40
53	E11a_E11b	KnownJunction	0	1.60	0.00	0.00	0.00	0.00	0.00	6.02
54	E11_Db	NovelBoundary	0	2.74	2.89	4.53	6.80	2.26	8.98	4.99
55	E11b_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	1.45
56	ER11b	ExonRegion	0	5.07	1.21	1.08	2.99	1.78	1.47	12.01
57	ER11c	ExonRegion	0	3.03	1.21	0.30	1.64	2.02	0.31	9.87
58	I11	Intron	0	3.33	2.84	14.20	9.73	1.13	9.25	4.17
59	I11_AR1	ActiveIntronRegion	0	3.35	2.86	14.28	9.79	1.13	9.31	4.18
60	ER12a	ExonRegion	0	0.29	0.00	0.00	0.00	0.00	0.00	0.51
61	I12	Intron	0	4.99	3.34	11.34	8.58	4.52	5.09	6.49
62	I12_AR1	ActiveIntronRegion	0	4.63	2.73	11.20	10.79	1.34	6.52	5.47
63	I12_AR2	ActiveIntronRegion	0	9.55	8.86	19.06	15.33	3.75	8.77	11.44
64	I12_SR2	SilentIntronRegion	0	4.63	2.40	10.30	5.09	4.06	5.31	4.44
65	I12_AR3	ActiveIntronRegion	0	8.28	2.42	13.02	8.80	7.70	6.90	4.62
66	I12_AR4	ActiveIntronRegion	0	3.00	1.85	12.60	4.68	7.62	3.73	5.11
67	I12_SR3	SilentIntronRegion	0	5.80	5.12	15.98	10.82	6.22	5.07	6.75
68	I12_AR5	ActiveIntronRegion	0	4.52	2.62	11.43	6.81	2.84	3.01	4.91
69	I12_SR4	SilentIntronRegion	0	2.57	2.10	12.75	7.20	2.90	3.10	4.91
70	I12_AR6	ActiveIntronRegion	0	4.97	3.93	10.06	9.23	4.06	4.89	5.35
71	I12_AR7	ActiveIntronRegion	0	2.96	8.50	8.52	10.51	3.47	4.20	6.07
72	I12_SR5	SilentIntronRegion	0	3.82	3.46	7.53	8.81	2.49	3.53	5.91
73	I12_AR8	ActiveIntronRegion	0	2.19	4.15	8.53	10.95	2.78	8.95	7.07
74	I12_AR9	ActiveIntronRegion	0	5.45	4.07	13.34	13.34	8.95	6.64	12.76
75	I12_AR10	ActiveIntronRegion	0	2.99	1.35	8.71	4.85	12.13	8.04	8.60
76	I12_SR7	SilentIntronRegion	0	7.05	2.52	11.69	10.22	6.50	1.78	8.88
77	I12_AR12	ActiveIntronRegion	0	8.58	5.68	14.15	16.64	7.10	4.12	17.54
78	E13_Aa	NovelBoundary	0	12.05	1.23	7.06	1.33	6.64	0.00	4.67
79	ER13a	ExonRegion	0	10.28	9.78	12.26	18.55	13.26	10.79	18.11
80	E13_Da	KnownBoundary	0	12.93	11.82	16.94	23.84	13.32	15.87	24.95
81	ER13b	ExonRegion	0	8.56	3.64	10.98	11.83	14.00	7.70	13.08
82	E13_Db	NovelBoundary	0	9.70	6.94	17.01	20.29	8.25	11.01	16.78
83	E13b_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
84	E13b_E14b	KnownJunction	0	7.98	0.00	3.02	0.00	1.18	1.53	6.19
85	I13	Intron	0	6.82	6.02	16.59	14.27	8.39	4.45	16.17
86	I13_AR1	ActiveIntronRegion	0	8.12	7.29	19.02	16.27	9.31	5.07	17.84
87	I13_SR1	SilentIntronRegion	0	2.55	1.43	10.77	9.83	7.43	3.11	14.90
88	E14_Aa	NovelBoundary	0	10.05	5.12	18.16	4.25	6.34	4.56	15.12
89	ER14a	ExonRegion	0	4.16	9.18	13.11	9.47	5.32	3.12	12.36
90	E14_Ab	KnownBoundary	0	10.63	22.80	15.33	23.03	7.79	9.22	17.03
91	ER14b	ExonRegion	0	4.49	5.55	11.49	12.67	6.03	6.82	11.60
92	E14_Da	KnownBoundary	0	5.24	1.63	3.74	1.68	3.25	1.63	1.50
93	ER14c	ExonRegion	0	1.22	1.21	0.40	1.25	1.98	1.23	1.00
94	ER14d	ExonRegion	0	0.00	1.21	0.00	1.25	1.21	0.20	0.00
95	IG46	Intergenic	0	4.12	4.12	8.10	7.64	11.25	4.41	5.54
96	IG46_AR3	ActiveIntergenicRegion	0	2.64	5.80	8.15	8.33	6.42	6.74	6.65
97	IG46_SR4	SilentIntergenicRegion	0	5.78	4.00	11.40	1.37	8.14	3.94	4.89
98	IG46_AR5	ActiveIntergenicRegion	0	1.29	0.07	7.84	9.23	2.60	0.00	3.52
99	IG46_AR6	ActiveIntergenicRegion	0	3.89	4.21	8.48	8.15	4.67	2.38	4.33
100	IG46_SR5	SilentIntergenicRegion	0	2.51	4.46	6.70	3.79	1.76	3.25	7.34
101	IG46_AR7	ActiveIntergenicRegion	0	7.33	10.43	19.39	17.38	12.34	7.55	11.65
102	IG46_SR6	SilentIntergenicRegion	0	12.08	16.14	28.35	26.72	12.61	17.51	22.26
103	IG46_AR8	ActiveIntergenicRegion	0	7.17	7.69	17.07	17.12	5.38	8.99	10.42
104	IG46_AR9	ActiveIntergenicRegion	0	10.44	11.01	27.05	25.20	52.67	11.72	11.12
105	IG46_SR8	SilentIntergenicRegion	0	8.23	3.10	6.38	8.31	50.14	7.56	7.58