Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MLL3	Gene	0	155.50	155.10	90.13	131.28	54.24	91.98	51.66
2	262189	Transcript	1	21.75	22.30	17.55	43.16	12.22	15.28	6.88
3	360104	Transcript	0	129.66	79.84	63.10	107.20	106.14	70.51	48.41
4	355193	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	13.04	34.43	8.08	16.84	1.49	15.82	4.13
6	E1a_E2a	KnownJunction	0	46.48	100.12	40.12	70.22	16.83	38.83	19.28
7	I1_AR11	ActiveIntronRegion	0	36.50	13.36	22.27	4.99	6.48	3.68	4.64
8	ER2a	ExonRegion	0	68.62	128.99	41.46	88.79	14.82	49.04	24.30
9	E2a_E3a	KnownJunction	0	82.67	126.52	42.71	79.08	10.44	44.11	25.07
10	ER3a	ExonRegion	0	120.35	164.50	77.19	112.27	20.15	71.57	29.87
11	E3a_E4a	KnownJunction	0	148.46	180.67	77.48	123.45	33.01	74.74	27.76
12	I3_AR1	ActiveIntronRegion	0	32.99	8.92	8.40	3.77	6.46	2.09	3.95
13	ER4a	ExonRegion	0	176.12	182.57	101.89	141.22	28.67	89.57	33.02
14	E4a_E5a	KnownJunction	0	182.00	151.82	95.26	152.04	26.90	74.40	32.68
15	ER5a	ExonRegion	0	146.00	147.41	76.05	111.26	30.20	59.42	35.43
16	E5a_E6a	KnownJunction	0	87.67	112.39	53.41	86.88	17.50	44.19	30.14
17	ER6a	ExonRegion	0	99.52	149.38	54.14	107.41	21.77	49.62	30.45
18	E6a_E7a	KnownJunction	0	94.53	153.79	49.79	93.25	25.80	50.09	31.29
19	I6_AR1	ActiveIntronRegion	0	31.11	16.31	12.26	7.39	5.36	4.60	3.56
20	ER7a	ExonRegion	0	114.46	137.82	51.12	93.85	18.66	51.67	28.54
21	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER8a	ExonRegion	0	153.98	161.21	58.59	121.19	24.59	53.24	28.73
23	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER9a	ExonRegion	0	194.88	184.84	81.60	126.38	27.62	55.54	40.86
25	E9a_E10a	KnownJunction	0	210.23	187.18	79.37	133.42	28.45	67.27	38.97
26	ER10a	ExonRegion	0	167.95	175.49	78.66	131.76	30.33	55.96	39.75
27	E10a_E11a	KnownJunction	0	112.11	175.07	69.49	129.06	21.78	60.30	32.42
28	ER11a	ExonRegion	0	84.04	164.97	64.11	114.40	26.00	48.31	32.58
29	E11a_E12a	KnownJunction	0	72.17	127.97	62.63	87.42	13.35	51.27	30.37
30	ER12a	ExonRegion	0	102.77	119.00	62.75	95.53	22.25	57.37	30.46
31	E12a_E13a	KnownJunction	0	131.73	96.76	65.74	84.88	35.52	61.32	30.38
32	ER13a	ExonRegion	0	133.27	120.75	84.01	100.27	31.49	62.67	35.57
33	E13a_E14a	KnownJunction	0	130.23	126.55	85.26	132.64	32.80	65.93	35.21
34	ER14a	ExonRegion	0	116.86	125.52	75.84	91.98	23.09	54.98	40.03
35	E14a_E15a	KnownJunction	0	28.46	61.32	38.12	52.10	12.66	34.81	20.05
36	I14_SR2	SilentIntronRegion	0	34.84	11.49	13.70	5.70	2.85	5.47	4.12
37	ER15a	ExonRegion	0	45.20	59.96	36.90	40.13	13.58	28.27	16.18
38	E15a_E16a	KnownJunction	0	41.12	79.55	29.76	52.88	11.66	27.04	9.24
39	ER16a	ExonRegion	0	54.16	75.26	32.54	55.35	9.61	27.84	16.17
40	E16a_E17a	KnownJunction	0	65.11	72.72	38.47	60.60	16.55	35.97	30.27
41	ER17a	ExonRegion	0	83.50	112.65	49.24	103.68	22.69	44.74	31.12
42	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER18a	ExonRegion	0	78.56	128.24	47.83	108.60	16.78	38.85	39.86
44	E18a_E19a	KnownJunction	0	78.68	117.43	39.78	85.82	26.70	42.24	37.29
45	E18a_E24a	NovelJunction	0	0.00	10.32	2.24	11.32	0.00	2.73	2.36
46	ER19a	ExonRegion	1	77.70	117.23	44.67	102.15	27.59	34.01	37.50
47	E19a_E20a	KnownJunction	0	67.91	121.40	26.37	93.44	23.93	37.06	27.95
48	ER20a	ExonRegion	0	95.48	149.77	52.88	115.60	34.41	49.44	41.69
49	E20a_E21a	KnownJunction	0	108.48	183.40	59.81	132.34	28.61	77.34	43.48
50	ER21a	ExonRegion	0	101.82	145.64	61.77	114.04	33.54	60.36	44.28
51	E21a_E22a	KnownJunction	0	111.07	126.55	66.06	115.73	31.77	70.27	39.40
52	ER22a	ExonRegion	0	130.37	155.15	77.52	113.38	36.93	87.14	46.44
53	E22a_E23a	KnownJunction	0	110.59	148.04	59.49	83.82	32.32	63.73	35.87
54	ER23a	ExonRegion	0	127.98	126.76	67.22	82.48	27.63	47.62	31.59
55	E23a_E24a	KnownJunction	0	144.00	139.00	70.80	90.78	26.67	49.45	27.09
56	ER24a	ExonRegion	0	161.54	145.37	79.35	101.80	25.92	56.08	30.59
57	E24_Da	NovelBoundary	1	76.91	1.55	32.99	0.00	0.00	0.00	0.00
58	E24a_E25a	KnownJunction	1	172.69	136.64	86.84	88.64	34.60	64.19	26.01
59	ER25a	ExonRegion	0	184.99	125.47	91.92	85.64	33.35	52.33	32.52
60	E25a_E26a	KnownJunction	1	144.18	116.54	77.08	103.70	17.17	59.28	22.29
61	ER26a	ExonRegion	1	210.02	119.54	108.98	99.92	26.90	66.04	31.31
62	E26a_E27a	KnownJunction	1	192.52	90.22	89.60	88.45	26.74	60.27	27.40
63	ER27a	ExonRegion	1	201.94	122.26	104.90	98.63	28.45	67.10	32.57
64	E27a_E28a	KnownJunction	1	207.51	149.12	105.26	94.33	25.15	66.89	33.87
65	E27a_E29a	NovelJunction	1	8.50	33.65	10.19	9.89	13.09	20.42	1.46
66	ER28a	ExonRegion	0	214.35	155.74	113.23	109.69	26.67	67.01	38.28
67	E28a_E29a	KnownJunction	0	196.34	133.04	113.35	101.05	54.84	59.79	42.49
68	ER29a	ExonRegion	0	212.93	178.29	129.62	117.09	47.61	81.43	50.26
69	E29a_E30a	KnownJunction	0	169.80	188.84	106.30	99.72	34.26	106.77	44.71
70	ER30a	ExonRegion	0	213.97	195.89	140.18	109.66	33.55	104.25	57.10
71	E30a_E31a	KnownJunction	0	152.35	125.13	102.75	70.06	26.58	55.50	39.60
72	ER31a	ExonRegion	0	184.58	191.47	119.39	112.88	53.11	97.03	56.96
73	E31a_E32a	KnownJunction	0	131.25	129.83	96.71	64.86	27.92	65.55	36.47
74	ER32a	ExonRegion	0	129.98	163.27	91.54	97.76	35.61	64.98	43.38
75	E32a_E33a	KnownJunction	0	130.88	173.00	91.64	97.99	21.67	84.39	38.92
76	E33_Aa	NovelBoundary	1	51.42	0.00	38.33	0.00	0.00	0.00	0.00
77	ER33a	ExonRegion	0	138.29	181.01	102.33	116.01	33.60	86.82	46.19
78	E33a_E34a	KnownJunction	0	169.35	184.32	101.44	124.16	34.53	113.28	36.24
79	E34_Aa	NovelBoundary	0	14.97	16.29	10.55	5.12	45.78	7.91	7.09
80	ER34a	ExonRegion	0	154.63	193.75	113.09	118.73	60.32	93.46	46.98
81	E34_Da	NovelBoundary	0	11.30	7.64	3.98	4.52	43.39	8.09	4.80
82	E34a_E35a	KnownJunction	0	152.70	162.52	116.14	116.84	47.86	80.77	37.71
83	E34a_E36a	NovelJunction	1	27.62	33.29	6.74	26.66	0.00	21.68	9.36
84	I34_SR1	SilentIntronRegion	0	7.08	4.08	3.84	1.61	17.76	3.15	3.47
85	ER35a	ExonRegion	1	266.86	201.97	143.63	142.34	57.29	104.14	43.24
86	E35a_E36a	KnownJunction	1	435.39	261.35	208.03	213.02	91.17	140.27	53.31
87	ER36a	ExonRegion	0	179.87	214.88	99.10	167.98	49.68	124.66	51.64
88	E36a_E37a	KnownJunction	0	90.23	200.87	59.91	180.18	29.14	102.94	53.43
89	ER37a	ExonRegion	0	104.31	177.88	64.10	137.94	35.39	88.86	52.75
90	E37a_E38a	KnownJunction	0	128.06	134.83	78.42	82.14	21.53	72.39	43.61
91	ER38a	ExonRegion	0	146.31	151.84	90.07	125.28	44.29	82.34	49.24
92	E38a_E39a	KnownJunction	0	185.56	216.69	99.56	194.46	67.59	117.25	65.85
93	ER39a	ExonRegion	0	203.77	207.87	114.17	195.26	70.46	117.02	71.96
94	E39a_E40a	KnownJunction	0	200.73	204.34	112.48	207.08	80.18	102.56	76.72
95	ER40a	ExonRegion	0	207.24	226.26	130.17	190.79	73.79	134.11	78.20
96	E40a_E41a	KnownJunction	0	213.03	229.90	141.85	190.02	87.62	138.13	78.58
97	E40a_E42a	NovelJunction	0	7.31	29.77	5.39	23.30	0.00	22.86	0.00
98	ER41a	ExonRegion	0	230.70	225.93	151.02	198.62	79.20	114.17	76.29
99	E41a_E42a	KnownJunction	0	214.80	216.98	140.20	190.56	66.62	101.25	75.91
100	ER42a	ExonRegion	0	208.74	238.91	133.32	214.85	86.74	146.68	82.93
101	E42a_E43a	KnownJunction	0	184.69	282.18	83.59	247.04	52.12	139.95	82.09
102	ER43a	ExonRegion	0	167.58	164.96	92.43	152.56	62.88	109.95	60.20
103	E43a_E44a	KnownJunction	0	97.30	105.32	97.47	117.14	47.72	86.48	50.66
104	ER44a	ExonRegion	0	119.95	144.42	91.72	130.97	61.26	83.29	60.63
105	E44a_E45a	NovelJunction	0	121.54	127.23	62.09	93.84	39.01	71.56	53.64
106	E44a_E46a	KnownJunction	0	21.75	22.30	17.55	43.16	12.22	15.28	6.88
107	E44b_E45a	KnownJunction	0	0.95	0.00	0.00	1.57	0.00	1.47	0.00
108	ER44b	ExonRegion	0	2.82	1.62	0.68	3.33	0.94	2.04	0.11
109	ER45a	ExonRegion	0	116.23	114.27	77.73	83.81	56.00	59.68	45.23
110	E45a_E46a	KnownJunction	0	162.48	132.49	90.04	116.95	93.92	87.96	64.42
111	ER46a	ExonRegion	0	117.71	144.52	81.75	147.08	61.46	89.64	62.68
112	E46a_E47a	KnownJunction	0	144.25	134.40	94.99	142.88	59.91	102.40	73.46
113	ER47a	ExonRegion	0	111.03	110.33	72.93	128.48	49.67	88.55	55.02
114	E47a_E48a	KnownJunction	0	103.78	84.73	53.87	106.47	72.04	78.82	58.19
115	ER48a	ExonRegion	0	162.58	133.53	103.46	140.50	74.69	93.43	65.85
116	E48a_E49a	KnownJunction	0	289.59	181.77	142.08	192.51	97.17	110.76	80.89
117	ER49a	ExonRegion	0	262.41	190.17	157.29	183.96	126.68	136.71	88.50
118	E49a_E50a	KnownJunction	0	250.95	204.71	158.49	219.63	105.31	149.76	93.24
119	ER50a	ExonRegion	0	236.65	201.36	143.75	191.71	108.98	129.36	85.96
120	E50a_E51a	KnownJunction	0	205.05	195.67	132.26	164.44	101.48	118.91	88.87
121	ER51a	ExonRegion	0	272.02	178.70	164.87	177.91	129.97	121.01	104.74
122	E51a_E52a	KnownJunction	0	330.53	179.75	176.18	162.82	153.72	133.78	110.14
123	ER52a	ExonRegion	0	352.56	225.45	194.11	225.34	121.28	159.82	130.18
124	E52a_E53a	KnownJunction	0	251.15	246.22	142.55	208.06	132.23	140.46	110.75
125	ER53a	ExonRegion	0	167.09	186.34	106.75	181.06	100.88	109.66	80.41
126	E53a_E54a	KnownJunction	0	124.27	154.58	83.22	152.58	72.87	95.57	60.87
127	ER54a	ExonRegion	0	205.76	160.19	108.20	171.73	110.03	104.80	70.62
128	E54a_E55a	KnownJunction	0	273.78	182.67	134.23	256.42	124.99	143.65	88.15
129	ER55a	ExonRegion	0	276.17	209.05	133.19	246.08	129.04	157.60	94.05
130	E55_Da	NovelBoundary	0	106.50	91.29	51.56	89.64	38.52	49.34	31.83
131	E55a_E56a	KnownJunction	0	129.66	79.84	63.10	107.20	106.14	70.51	48.41
132	E55b_E56a	KnownJunction	0	142.38	141.34	66.68	121.29	59.08	68.71	54.45
133	ER55b	ExonRegion	0	149.20	138.19	69.32	122.41	59.79	75.81	53.24
134	I55	Intron	0	38.65	17.69	16.64	14.29	7.00	10.63	5.66
135	I55_SR1	SilentIntronRegion	0	42.06	19.86	18.89	15.25	7.52	11.78	6.01
136	I55_AR1	ActiveIntronRegion	0	43.80	13.03	17.00	14.96	8.39	10.81	8.59
137	E56_Aa	NovelBoundary	1	46.28	15.71	23.74	10.51	11.57	13.32	4.23
138	ER56a	ExonRegion	0	198.88	194.41	108.65	174.63	127.05	124.44	86.97
139	E56a_E57a	KnownJunction	0	119.27	163.88	90.94	159.46	121.72	120.17	89.17
140	ER57a	ExonRegion	0	153.10	192.39	102.10	187.75	105.45	122.91	93.68
141	E57a_E58a	KnownJunction	0	158.09	215.64	117.79	225.26	114.18	122.05	88.18
142	E58_Aa	NovelBoundary	1	81.26	3.76	70.66	4.80	1.11	7.08	7.11
143	ER58a	ExonRegion	0	156.66	182.39	109.74	204.55	123.98	125.45	90.85
144	E58a_E59a	KnownJunction	0	163.01	151.72	93.36	191.37	128.59	96.85	95.48
145	ER59a	ExonRegion	0	165.42	184.55	102.24	175.67	107.73	122.46	90.00
146	E59a_E60a	KnownJunction	0	131.70	155.03	88.89	147.24	121.65	133.28	74.17
147	ER60a	ExonRegion	0	150.68	87.87	80.17	87.22	58.80	107.05	41.03
148	IG13_SR5	SilentIntergenicRegion	0	9.90	2.69	3.48	5.27	0.40	4.03	2.30
149	IG13_AR4	ActiveIntergenicRegion	0	10.43	6.42	4.56	7.34	2.26	5.77	3.25
150	IG13_SR3	SilentIntergenicRegion	0	6.66	7.86	2.73	8.16	1.40	6.43	3.70
151	IG13_AR3	ActiveIntergenicRegion	0	5.80	8.08	3.94	6.82	1.24	9.37	2.38