Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AKAP9	Gene	0	129.03	80.48	119.18	59.53	53.50	47.99	39.57
2	356239	Transcript	0	101.41	87.48	97.79	50.07	56.49	32.71	41.86
3	394565	Transcript	0	5.37	3.24	3.89	1.84	0.67	1.37	0.97
4	394564	Transcript	0	0.73	2.47	1.66	1.13	0.33	0.74	0.12
5	359028	Transcript	0	0.39	0.17	0.24	0.02	0.07	0.15	0.26
6	358100	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	265737	Transcript	0	2.59	0.38	1.73	0.57	0.08	0.38	0.21
8	394534	Transcript	0	26.89	20.84	28.59	14.54	13.79	11.14	5.33
9	ER1a	ExonRegion	0	4.22	31.03	2.94	22.57	4.69	9.34	2.14
10	E1_Ab	KnownBoundary	0	5.02	33.60	3.08	23.98	0.97	9.19	0.77
11	E1_Ac	KnownBoundary	1	10.77	40.09	10.52	35.35	16.11	11.31	6.36
12	ER1b	ExonRegion	0	8.53	49.57	6.91	38.16	11.50	15.94	5.53
13	ER1c	ExonRegion	0	41.46	73.91	31.48	52.70	13.47	29.91	11.68
14	E1a_E3a	KnownJunction	0	76.72	91.03	61.52	64.80	47.44	63.94	25.44
15	E1a_E4a	NovelJunction	1	1.64	0.00	1.78	3.36	1.06	11.71	0.63
16	I1_AR2	ActiveIntronRegion	1	16.40	6.18	16.98	4.11	19.69	7.31	12.79
17	I1_SR2	SilentIntronRegion	1	28.15	5.35	37.12	7.63	30.55	16.15	22.05
18	I1_AR3	ActiveIntronRegion	0	15.27	1.43	18.76	3.87	13.79	5.11	9.03
19	ER2a	ExonRegion	0	1.24	0.00	1.06	0.00	0.00	0.00	0.66
20	E2a_E3a	KnownJunction	0	1.89	1.37	1.72	0.00	0.00	0.00	3.02
21	ER3a	ExonRegion	0	115.26	139.49	106.81	84.50	40.73	77.27	37.98
22	E3a_E4a	KnownJunction	0	112.37	107.56	107.40	62.72	35.92	50.20	23.27
23	ER4a	ExonRegion	0	122.86	108.37	113.29	57.14	47.03	51.68	41.23
24	E4_Da	NovelBoundary	1	47.18	0.00	39.94	0.00	0.00	0.00	0.00
25	E4a_E5a	KnownJunction	0	87.69	81.63	87.49	49.31	66.42	41.86	42.71
26	E4a_E6a	NovelJunction	1	3.30	14.45	8.31	3.12	0.97	6.19	3.34
27	ER5a	ExonRegion	0	110.73	111.23	109.03	58.68	53.27	54.74	55.90
28	E5a_E6a	KnownJunction	0	114.44	118.48	103.68	64.67	54.61	69.36	50.91
29	ER6a	ExonRegion	0	118.18	137.43	122.65	81.44	51.66	61.08	46.57
30	E6a_E7a	KnownJunction	0	127.84	124.42	119.14	77.21	65.77	55.40	43.11
31	ER7a	ExonRegion	0	168.32	134.85	171.83	97.02	50.74	76.15	53.69
32	E7a_E8a	KnownJunction	0	162.01	108.34	163.03	72.90	39.44	79.54	33.42
33	ER8a	ExonRegion	0	147.48	109.56	158.33	79.86	44.10	64.93	45.97
34	E8_Da	KnownBoundary	0	0.72	4.44	0.56	2.90	0.00	0.00	1.49
35	E8a_E9a	KnownJunction	0	146.10	100.12	175.89	58.84	28.61	48.67	35.99
36	ER8b	ExonRegion	0	0.73	2.47	1.66	1.13	0.33	0.74	0.12
37	ER9a	ExonRegion	0	131.18	67.29	139.77	49.29	37.60	42.07	39.21
38	E9a_E10a	KnownJunction	0	178.62	65.15	140.73	59.49	35.62	36.29	40.41
39	ER10a	ExonRegion	0	142.20	63.41	140.06	50.47	43.07	38.60	43.04
40	E10a_E11a	KnownJunction	0	119.17	76.34	114.75	43.10	44.17	52.13	40.99
41	ER11a	ExonRegion	0	175.24	78.74	159.87	53.37	48.95	40.34	43.55
42	E11a_E12a	KnownJunction	1	233.39	84.02	200.77	54.40	54.57	39.88	36.20
43	E12_Aa	NovelBoundary	1	92.61	1.13	88.12	4.28	0.00	0.00	1.78
44	ER12a	ExonRegion	0	216.16	89.93	198.85	66.38	48.22	59.64	48.83
45	E12a_E13a	KnownJunction	0	233.39	81.44	180.99	67.75	59.96	67.21	50.75
46	ER13a	ExonRegion	0	185.61	98.70	180.34	77.43	49.18	48.78	47.67
47	E13a_E14a	KnownJunction	0	142.88	91.63	161.41	74.69	58.88	36.85	46.48
48	ER14a	ExonRegion	0	136.24	81.81	152.73	72.13	53.46	38.55	46.67
49	E14a_E15a	KnownJunction	0	119.10	85.83	160.63	64.56	41.13	38.40	46.45
50	ER15a	ExonRegion	0	135.89	87.31	141.76	63.46	51.76	39.43	42.04
51	E15a_E16a	KnownJunction	1	152.96	71.77	96.57	49.44	50.85	16.19	39.43
52	ER16a	ExonRegion	0	196.65	80.33	138.93	54.89	86.75	43.76	46.36
53	E16a_E17a	KnownJunction	0	291.92	105.74	198.24	72.25	83.36	48.56	56.18
54	ER17a	ExonRegion	0	244.85	100.62	191.80	68.02	72.44	50.20	58.80
55	E17_Da	NovelBoundary	1	36.85	11.43	30.87	19.42	2.19	10.83	2.54
56	E17a_E18a	KnownJunction	0	152.60	72.64	132.77	36.82	62.75	36.77	49.01
57	ER18a	ExonRegion	0	149.51	78.43	149.66	47.98	62.19	36.67	55.33
58	E18a_E19a	KnownJunction	0	136.82	100.46	122.69	65.37	49.43	49.95	62.27
59	ER19a	ExonRegion	0	118.78	104.07	126.74	79.41	56.75	40.40	55.81
60	E19_Da	KnownBoundary	0	4.61	2.97	4.60	1.16	1.11	0.00	0.77
61	E19a_E20a	KnownJunction	1	23.82	16.50	118.56	85.47	6.59	32.78	18.33
62	E19a_E21a	NovelJunction	1	97.17	72.96	10.17	4.04	35.78	3.00	31.07
63	ER19b	ExonRegion	0	5.37	3.24	3.89	1.84	0.67	1.37	0.97
64	ER20a	ExonRegion	1	27.18	20.66	115.92	76.25	6.53	30.96	18.15
65	E20a_E21a	KnownJunction	1	14.69	11.45	82.49	62.91	5.56	27.12	15.58
66	E21_Aa	NovelBoundary	1	6.83	10.67	41.85	9.67	0.00	2.73	3.04
67	ER21a	ExonRegion	0	76.84	63.29	109.19	55.84	46.43	32.02	43.21
68	E21_Da	NovelBoundary	1	45.93	10.75	48.33	4.39	2.05	4.40	1.43
69	E21a_E22a	KnownJunction	0	99.09	82.47	107.63	47.44	42.33	24.68	40.03
70	ER22a	ExonRegion	0	128.26	93.38	131.15	66.16	65.73	47.08	52.33
71	E22a_E23a	KnownJunction	0	138.88	111.71	135.53	73.93	76.17	69.01	57.25
72	ER23a	ExonRegion	0	132.02	114.46	146.57	86.42	76.92	56.62	51.03
73	E23a_E25a	KnownJunction	0	107.08	98.89	113.32	56.27	63.26	54.86	40.96
74	ER24a	ExonRegion	0	4.37	0.75	3.47	1.14	0.17	0.76	0.42
75	E24a_E25a	KnownJunction	0	0.82	0.00	0.00	0.00	0.00	0.00	0.00
76	ER25a	ExonRegion	0	164.81	92.49	111.27	69.11	86.16	49.63	36.72
77	E25a_E26a	KnownJunction	0	236.95	113.97	140.83	89.70	117.59	71.61	50.65
78	ER26a	ExonRegion	0	285.88	113.32	158.27	97.01	94.42	70.77	49.23
79	E26a_E27a	KnownJunction	1	202.92	72.85	132.60	73.42	60.86	53.63	28.22
80	ER27a	ExonRegion	0	210.54	107.75	185.77	83.12	64.51	57.85	53.15
81	E27a_E28a	KnownJunction	0	181.94	87.69	146.18	64.91	65.61	53.12	44.79
82	ER28a	ExonRegion	0	201.07	114.86	168.34	65.04	69.86	62.32	51.33
83	E28a_E29a	KnownJunction	0	166.77	131.80	163.39	59.11	42.46	88.17	51.95
84	ER29a	ExonRegion	0	157.46	112.20	141.97	58.95	51.52	58.18	42.01
85	E29a_E30a	KnownJunction	0	94.52	53.49	101.63	35.22	40.60	29.56	27.65
86	E30_Aa	NovelBoundary	1	53.91	3.49	50.48	4.77	0.97	2.79	0.00
87	ER30a	ExonRegion	0	114.47	85.62	109.87	51.83	47.61	43.53	38.86
88	E30a_E31a	KnownJunction	0	79.01	75.95	95.07	29.72	51.20	46.36	39.50
89	ER31a	ExonRegion	0	198.54	93.77	150.47	53.47	75.21	52.57	46.19
90	E31a_E32a	KnownJunction	0	328.02	82.44	196.30	62.12	70.61	64.80	57.13
91	ER32a	ExonRegion	1	383.77	114.93	248.54	93.02	119.25	88.37	60.95
92	E32a_E33a	KnownJunction	1	291.42	75.27	179.57	64.48	107.17	44.86	38.31
93	ER33a	ExonRegion	0	146.76	81.32	134.72	61.66	65.48	47.24	43.51
94	E33_Da	KnownBoundary	0	114.94	51.10	118.66	39.23	20.63	47.17	33.32
95	ER33b	ExonRegion	0	99.90	54.90	110.53	46.05	34.36	38.76	39.62
96	E33b_E34a	KnownJunction	0	92.31	53.88	99.01	50.55	41.10	27.74	38.52
97	ER34a	ExonRegion	0	130.31	59.56	136.53	54.36	40.35	33.71	36.05
98	E34a_E35a	KnownJunction	0	133.25	53.70	122.46	43.32	78.31	31.65	46.42
99	ER35a	ExonRegion	0	134.29	91.94	137.06	64.11	72.24	40.99	53.61
100	E35_Da	KnownBoundary	0	1.00	0.00	1.47	0.00	0.00	0.00	0.82
101	E35a_E36a	KnownJunction	0	122.77	113.10	128.03	65.18	63.03	38.83	55.22
102	E35a_E38a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
103	ER35b	ExonRegion	0	0.79	0.33	0.47	0.03	0.14	0.31	0.52
104	E35b_E37a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
105	ER36a	ExonRegion	0	136.25	106.19	136.27	55.63	77.56	38.89	57.46
106	E36a_E37a	KnownJunction	0	142.38	99.60	123.92	56.89	80.68	43.79	52.61
107	ER37a	ExonRegion	0	120.44	113.33	114.56	61.92	70.15	53.45	51.62
108	E37a_E38a	KnownJunction	0	83.53	97.89	116.64	61.12	75.61	51.86	44.30
109	I37	Intron	1	2.10	1.29	3.08	4.53	0.65	14.10	0.21
110	I37_SR1	SilentIntronRegion	1	1.95	0.15	2.66	4.08	0.81	11.27	0.30
111	I37_AR2	ActiveIntronRegion	1	3.21	2.22	3.56	4.62	1.01	20.69	0.18
112	E38_Aa	NovelBoundary	1	6.46	0.00	4.43	7.59	3.04	23.02	0.64
113	ER38a	ExonRegion	0	90.24	116.01	117.44	71.82	55.73	67.48	45.51
114	E38a_E39a	KnownJunction	0	81.73	88.80	97.57	65.07	60.38	56.76	49.73
115	E38a_E40a	NovelJunction	0	6.13	8.07	11.21	1.65	0.00	5.65	0.00
116	ER39a	ExonRegion	0	100.92	117.33	111.62	86.37	62.05	60.53	54.76
117	E39a_E40a	KnownJunction	0	111.04	123.27	106.23	112.75	68.72	78.82	50.16
118	E40_Aa	NovelBoundary	1	45.80	0.00	47.01	4.47	0.00	0.00	0.89
119	ER40a	ExonRegion	0	166.07	123.81	142.22	107.10	91.28	75.47	60.19
120	E40_Da	NovelBoundary	0	39.61	29.16	47.85	23.41	10.24	20.15	9.22
121	E40a_E41b	KnownJunction	0	160.54	77.50	125.28	71.82	84.97	51.11	52.40
122	I40	Intron	0	33.74	18.08	35.04	9.23	7.90	8.37	4.27
123	I40_AR1	ActiveIntronRegion	0	36.15	21.55	47.28	9.65	9.40	10.25	5.90
124	I40_SR1	SilentIntronRegion	0	28.74	12.66	18.15	5.13	6.39	8.57	2.74
125	I40_AR2	ActiveIntronRegion	0	36.09	19.32	36.69	13.37	7.48	5.43	3.66
126	E41_Aa	NovelBoundary	1	56.35	19.18	49.61	22.03	14.57	17.02	4.61
127	ER41a	ExonRegion	0	26.89	20.84	28.59	14.54	13.79	11.14	5.33
128	E41_Ab	KnownBoundary	0	48.82	53.25	53.29	30.04	10.72	26.48	8.05
129	ER41b	ExonRegion	0	176.99	157.27	164.19	117.61	91.31	79.66	76.89
130	E41a_E42a	KnownJunction	0	146.97	144.73	152.15	113.89	94.08	68.26	73.71
131	ER42a	ExonRegion	0	151.98	121.07	150.76	91.57	86.74	82.13	66.59
132	E42a_E43a	KnownJunction	0	153.98	110.94	151.49	79.27	97.42	76.16	48.12
133	ER43a	ExonRegion	0	220.30	142.56	183.88	100.40	108.63	94.58	66.25
134	E43a_E44a	KnownJunction	0	203.20	116.09	167.44	87.23	113.74	78.76	48.91
135	ER44a	ExonRegion	0	262.69	119.01	185.46	107.54	115.25	86.14	54.88
136	E44a_E45a	KnownJunction	1	295.66	113.99	191.11	121.72	111.78	90.05	43.41
137	ER45a	ExonRegion	0	283.97	107.74	206.19	95.70	118.55	84.84	60.85
138	E45a_E46a	KnownJunction	0	182.37	94.63	151.71	70.33	101.52	54.94	45.12
139	ER46a	ExonRegion	0	145.08	100.81	131.27	73.27	70.88	52.78	47.94
140	E46a_E47a	KnownJunction	0	91.83	97.97	126.39	65.89	54.43	53.09	36.72
141	ER47a	ExonRegion	0	81.61	96.89	118.10	67.73	56.96	53.55	47.19
142	E47a_E48a	KnownJunction	0	71.18	89.22	85.70	58.76	39.54	44.73	40.77
143	ER48a	ExonRegion	0	79.08	84.66	80.62	65.98	52.86	51.23	41.33
144	E48a_E49a	KnownJunction	0	83.47	74.58	78.17	65.97	61.87	45.72	47.84
145	ER49a	ExonRegion	0	80.34	84.16	87.47	68.06	74.37	59.86	49.64
146	E49a_E50a	KnownJunction	0	97.50	102.70	102.58	70.63	77.02	57.14	50.96
147	E49a_E52a	NovelJunction	1	4.37	12.35	0.63	2.84	1.18	1.66	0.89
148	I49_AR1	ActiveIntronRegion	0	16.88	4.67	11.89	9.91	2.23	10.29	2.80
149	ER50a	ExonRegion	0	130.36	116.78	119.93	104.38	84.61	92.82	61.51
150	E50_Da	NovelBoundary	1	26.00	8.96	10.48	14.03	4.17	22.57	4.16
151	E50a_E51a	KnownJunction	0	125.74	108.32	130.34	100.51	78.29	96.21	47.84
152	I50	Intron	0	18.22	9.50	15.77	11.84	6.36	9.75	5.27
153	I50_AR1	ActiveIntronRegion	0	28.87	6.39	11.26	11.36	6.90	11.81	2.08
154	I50_SR1	SilentIntronRegion	0	16.79	10.28	17.12	12.23	6.42	9.66	6.02
155	E51_Aa	NovelBoundary	0	22.66	21.86	14.84	17.80	11.69	14.87	6.48
156	ER51a	ExonRegion	0	223.73	138.75	156.81	109.83	146.13	108.15	62.03
157	E51_Da	NovelBoundary	0	51.46	21.04	46.11	37.47	6.50	31.17	10.92
158	E51a_E52a	KnownJunction	0	285.05	138.24	172.26	93.00	151.07	104.65	57.97
159	I51	Intron	0	28.96	17.63	23.90	16.55	5.67	13.80	5.29
160	I51_AR1	ActiveIntronRegion	0	31.33	19.69	26.40	18.41	5.72	15.04	5.60
161	E52_Aa	NovelBoundary	0	55.74	16.45	51.33	20.83	4.54	25.03	6.95
162	ER52a	ExonRegion	0	194.57	94.36	133.50	86.43	83.96	99.44	44.28
163	ER52b	ExonRegion	0	3.95	2.26	5.32	2.14	1.97	1.23	1.16
164	IG25	Intergenic	0	11.84	5.63	10.44	8.62	2.68	7.82	4.04
165	IG25_SR1	SilentIntergenicRegion	0	11.97	5.70	10.56	8.72	2.69	7.91	4.09