Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC008267.6	Gene	0	35.94	8.10	12.41	11.78	27.97	11.50	11.98
2	324866	Transcript	0	19.41	3.97	6.93	4.28	24.83	4.87	10.54
3	IG48_AR5	ActiveIntergenicRegion	0	24.54	2.84	16.52	1.71	10.90	1.28	6.31
4	IG48_SR3	SilentIntergenicRegion	0	33.76	2.34	19.21	3.74	22.36	0.61	13.56
5	IG48_AR4	ActiveIntergenicRegion	0	24.97	2.43	15.69	3.53	19.98	1.23	12.93
6	IG48_AR2	ActiveIntergenicRegion	0	3.94	0.63	5.01	1.66	9.42	2.45	0.37
7	ER1a	ExonRegion	0	6.56	0.00	3.89	0.01	9.63	0.00	2.96
8	E1a_E2a	KnownJunction	0	7.26	0.00	3.31	0.00	15.19	0.00	5.19
9	E1a_E5a	NovelJunction	1	20.98	29.32	18.68	11.30	7.33	8.76	15.32
10	E2_Aa	NovelBoundary	0	9.70	10.14	6.38	3.96	7.81	3.03	5.86
11	ER2a	ExonRegion	1	23.33	1.58	12.02	8.94	29.15	9.38	15.15
12	E2a_E3a	KnownJunction	0	16.27	6.91	6.35	0.00	17.38	2.65	17.08
13	I2_SR2	SilentIntronRegion	0	2.98	1.55	3.89	1.35	11.54	0.81	1.51
14	E3_Aa	NovelBoundary	1	32.24	115.49	16.55	59.22	7.77	82.38	72.69
15	ER3a	ExonRegion	0	37.81	4.84	15.41	1.17	71.40	7.69	15.17
16	E3_Da	NovelBoundary	1	1267.85	650.38	428.81	324.01	323.55	253.39	177.05
17	E3a_E4a	KnownJunction	0	1.03	0.00	0.00	0.00	0.00	0.00	4.17
18	I3	Intron	0	22.51	8.04	8.05	3.45	25.19	2.76	2.34
19	I3_AR1	ActiveIntronRegion	1	47.25	15.99	11.76	2.38	91.37	3.96	2.40
20	I3_SR1	SilentIntronRegion	0	17.47	6.42	7.30	3.68	11.61	2.52	2.33
21	I3	Intron	0	21.75	9.05	8.57	4.99	34.23	3.78	4.28
22	I3_AR2	ActiveIntronRegion	1	43.51	25.89	14.22	16.80	52.80	8.72	5.43
23	I3_AR3	ActiveIntronRegion	0	52.82	13.91	18.11	8.01	134.84	7.78	11.33
24	I3_SR4	SilentIntronRegion	0	14.38	6.86	7.28	2.49	28.43	2.46	3.35
25	I3_AR4	ActiveIntronRegion	0	43.00	10.46	15.23	4.07	36.02	5.79	8.20
26	I3_SR5	SilentIntronRegion	0	13.11	3.01	6.53	2.96	12.71	1.29	4.52
27	E4_Aa	NovelBoundary	0	66.19	129.23	89.92	131.80	29.39	86.24	42.49
28	ER4a	ExonRegion	0	21.32	9.30	5.26	5.06	27.64	7.05	13.32
29	E4_Da	NovelBoundary	0	17.49	4.31	10.71	2.33	15.15	5.39	7.67
30	E4a_E5a	KnownJunction	1	23.45	4.62	3.25	10.70	25.61	4.90	9.85
31	I4	Intron	0	2.97	1.44	3.93	1.15	8.46	0.97	1.60
32	I4_SR1	SilentIntronRegion	0	3.15	1.67	4.34	1.28	8.11	0.63	1.62
33	I4_SR2	SilentIntronRegion	0	2.36	0.70	2.56	0.72	9.63	2.12	1.54
34	E5_Aa	NovelBoundary	1	497.64	707.73	129.40	185.66	138.16	116.44	107.92
35	ER5a	ExonRegion	0	37.61	8.46	12.90	12.66	27.51	12.11	11.97
36	IG47_SR1	SilentIntergenicRegion	0	2.69	0.76	9.16	1.08	5.16	1.73	2.65