Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PHKG1	Gene	0	9.90	46.32	7.64	35.39	2.71	48.38	3.29
2	297373	Transcript	0	3.79	23.88	3.87	19.29	0.00	37.71	0.54
3	395428	Transcript	0	0.15	3.28	0.44	2.18	0.40	2.21	0.67
4	IG9	Intergenic	0	20.67	50.93	15.70	32.23	1.45	39.91	4.13
5	IG9_AR2	ActiveIntergenicRegion	0	24.19	66.96	20.38	42.48	2.97	48.70	4.93
6	IG9_SR1	SilentIntergenicRegion	0	20.76	49.73	15.42	31.46	1.19	39.62	4.14
7	ER1a	ExonRegion	0	1.99	8.32	4.22	3.79	0.83	0.94	1.01
8	E1_Da	NovelBoundary	0	8.04	25.06	3.64	9.08	0.00	12.84	6.32
9	E1a_E2a	KnownJunction	0	1.00	0.00	0.89	0.00	0.00	0.00	0.00
10	I1	Intron	0	7.83	17.58	5.26	10.68	2.06	11.13	3.17
11	I1_SR1	SilentIntronRegion	0	7.84	17.60	5.26	10.69	2.07	11.15	3.17
12	E2_Aa	NovelBoundary	0	10.15	39.59	8.21	28.69	1.94	24.82	3.15
13	ER2a	ExonRegion	0	10.86	68.71	13.58	48.80	1.42	82.49	0.43
14	E2_Da	NovelBoundary	0	17.32	62.95	15.94	45.76	3.37	74.80	4.49
15	E2a_E3a	KnownJunction	0	4.67	28.01	7.86	27.88	0.00	53.65	0.00
16	E2a_E5b	NovelJunction	1	0.00	14.27	0.76	3.96	0.00	13.86	0.00
17	I2	Intron	0	12.57	44.59	8.72	30.02	1.61	36.16	2.25
18	I2_AR1	ActiveIntronRegion	0	9.48	47.72	8.02	31.06	1.03	38.50	2.30
19	I2_SR1	SilentIntronRegion	0	7.37	20.95	6.30	14.86	2.26	14.24	0.55
20	I2_AR2	ActiveIntronRegion	0	17.55	47.97	10.23	33.25	2.10	39.87	2.68
21	E3_Aa	NovelBoundary	0	16.11	54.51	12.73	37.60	4.03	43.01	2.15
22	ER3a	ExonRegion	0	16.46	69.86	7.72	65.71	3.42	78.70	1.87
23	E3_Da	NovelBoundary	0	4.89	38.86	6.97	27.63	0.00	27.42	1.98
24	E3a_E4a	KnownJunction	0	7.34	45.34	6.73	46.52	0.00	59.71	0.89
25	E3a_E5b	NovelJunction	0	0.00	7.72	0.00	8.91	0.00	5.74	0.00
26	I3	Intron	0	5.10	20.25	2.66	13.74	1.10	14.54	1.89
27	I3_AR1	ActiveIntronRegion	0	7.69	32.24	4.03	19.09	1.84	18.81	2.77
28	I3_SR1	SilentIntronRegion	0	3.13	7.23	1.37	8.57	0.13	13.69	1.00
29	E4_Aa	NovelBoundary	0	3.86	26.85	6.11	14.95	0.00	23.16	3.64
30	ER4a	ExonRegion	0	5.74	33.91	4.36	26.87	0.75	44.23	0.45
31	E4_Da	NovelBoundary	0	10.77	25.85	2.14	26.50	0.00	36.26	1.78
32	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E4a_E5b	KnownJunction	0	3.79	23.88	3.87	19.29	0.00	37.71	0.54
34	I4	Intron	0	5.59	13.98	3.86	8.00	1.67	11.63	1.39
35	I4_AR1	ActiveIntronRegion	0	5.09	10.86	2.78	6.65	1.40	14.41	2.22
36	I4_SR1	SilentIntronRegion	0	6.93	11.75	5.06	8.56	1.69	12.15	1.84
37	I4_AR2	ActiveIntronRegion	0	6.60	24.61	3.61	11.16	0.94	16.12	0.06
38	I4_SR2	SilentIntronRegion	0	3.16	16.24	2.08	6.64	1.86	9.13	0.72
39	E5_Ab	NovelBoundary	0	1.67	12.56	1.31	7.78	3.30	2.73	3.47
40	ER5a	ExonRegion	0	0.31	6.56	0.88	4.36	0.81	4.41	1.35
41	ER5b	ExonRegion	0	6.22	44.43	6.54	36.20	1.89	44.21	1.91
42	E5_Da	NovelBoundary	0	1.97	17.18	2.36	21.00	0.00	15.12	2.88
43	E5a_E6a	KnownJunction	0	11.20	55.85	6.84	43.37	1.04	51.88	0.73
44	I5	Intron	0	3.17	9.32	3.72	10.93	3.54	9.82	3.69
45	I5_SR1	SilentIntronRegion	0	3.20	9.41	3.75	11.04	3.57	9.91	3.73
46	E6_Aa	NovelBoundary	0	3.97	12.51	4.04	7.26	4.03	11.01	6.49
47	ER6a	ExonRegion	0	13.37	48.21	10.88	34.23	5.70	43.37	7.26
48	E6_Da	NovelBoundary	0	8.83	20.36	7.90	16.96	3.92	13.43	2.48
49	E6a_E7a	KnownJunction	0	3.89	16.81	3.32	10.81	0.00	27.93	0.00
50	I6	Intron	0	3.06	14.72	3.13	6.33	0.87	7.77	0.97
51	I6_SR1	SilentIntronRegion	0	3.48	17.27	3.67	7.45	1.03	9.14	1.13
52	E7_Aa	NovelBoundary	0	14.07	34.57	5.92	33.00	0.00	48.16	0.82
53	ER7a	ExonRegion	0	7.73	40.70	6.23	24.76	0.45	44.90	0.84
54	E7_Da	NovelBoundary	0	1.54	12.58	3.02	15.01	0.88	21.06	0.00
55	E7a_E8a	KnownJunction	1	9.53	59.27	8.69	18.56	0.00	39.29	0.89
56	E7a_E9a	NovelJunction	0	3.81	4.05	0.00	1.38	0.00	9.76	0.00
57	E8_Aa	NovelBoundary	0	1.59	19.52	4.68	7.64	2.35	14.02	4.69
58	ER8a	ExonRegion	0	9.13	64.03	9.69	38.44	1.05	58.43	3.49
59	E8_Da	NovelBoundary	0	0.00	16.13	1.48	24.76	4.13	16.24	3.60
60	E8a_E9a	KnownJunction	0	5.97	49.13	8.77	26.44	0.00	47.84	1.75
61	E9_Aa	NovelBoundary	1	5.09	17.16	3.84	34.60	1.18	30.07	4.20
62	ER9a	ExonRegion	0	8.07	63.98	9.59	42.57	0.66	76.95	1.58
63	E9_Da	NovelBoundary	0	14.15	31.18	5.13	33.16	2.90	46.42	3.43
64	E9a_E10a	KnownJunction	1	7.16	33.18	5.20	11.08	0.00	45.26	0.00
65	I9	Intron	0	2.99	12.26	1.96	20.34	1.25	24.68	1.24
66	I9_SR1	SilentIntronRegion	0	3.01	12.33	1.97	20.46	1.26	24.81	1.25
67	E10_Aa	NovelBoundary	0	2.30	9.80	0.00	21.70	0.00	22.11	4.17
68	ER10a	ExonRegion	0	9.93	39.80	6.64	32.09	3.32	40.72	4.12