Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 ELMO1 Gene 0 5.42 5.77 22.10 3.97 109.96 4.50 1.77 2 310758 Transcript 0 0 0 0 0 0 0 0 3 361912 Transcript 0 0 0 0 0 0 0 0 4 341056 Transcript 0 2.01 0.48 1.11 0.47 51.09 0.24 0.00 5 396045 Transcript 0 0.00 0.00 0.34 0.00 0.00 0.00 0.00 6 396042 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 396040 Transcript 0 0.01 0.00 0.18 0.00 0.52 0.00 0.00 8 ER1a ExonRegion 0 0.55 1.27 2.28 3.23 11.94 0.16 0.00 9 E1a_E2a KnownJunction 0 5.49 3.18 9.93 2.74 22.57 1.50 0.00 10 ER2a ExonRegion 0 7.81 3.93 20.79 2.89 64.71 1.27 0.34 11 E2a_E3a KnownJunction 0 13.77 9.06 28.22 2.52 85.18 1.39 0.56 12 ER3a ExonRegion 0 11.85 7.23 33.89 3.53 97.24 2.45 1.28 13 E3a_E4a KnownJunction 0 4.51 1.47 28.12 3.28 102.82 1.42 2.15 14 ER4a ExonRegion 0 9.35 4.18 29.80 3.35 93.68 1.78 1.56 15 E4a_E5a KnownJunction 0 8.36 5.73 29.32 4.09 90.53 0.99 0.76 16 ER5a ExonRegion 0 9.01 5.41 26.96 4.94 113.43 1.11 0.97 17 E5a_E6a KnownJunction 0 9.11 5.81 16.86 1.60 97.79 1.66 0.00 18 ER6a ExonRegion 0 6.36 8.15 18.91 2.29 90.76 4.46 2.26 19 E6a_E7a KnownJunction 0 7.44 12.37 22.30 1.65 105.65 5.87 2.31 20 ER7a ExonRegion 0 7.64 11.00 26.47 4.19 133.38 8.00 2.34 21 E7a_E8a KnownJunction 0 5.19 4.49 18.98 4.55 141.89 6.57 1.99 22 ER8a ExonRegion 0 11.95 15.36 33.05 4.05 152.84 7.79 4.72 23 E8a_E9a KnownJunction 0 22.31 13.48 44.36 7.91 148.74 4.05 2.69 24 ER9a ExonRegion 0 14.44 9.57 37.74 8.39 178.35 9.56 1.81 25 E9a_E10a KnownJunction 0 15.00 8.14 40.45 9.75 223.34 7.91 0.00 26 ER10a ExonRegion 0 16.48 11.89 43.26 6.50 173.87 9.36 0.86 27 E10a_E11a KnownJunction 0 11.20 8.20 35.19 5.72 127.25 9.00 0.80 28 ER11a ExonRegion 0 10.41 8.24 37.91 7.73 144.66 10.53 0.98 29 E11a_E12a KnownJunction 0 6.94 8.01 28.41 6.12 130.23 9.11 0.77 30 ER12a ExonRegion 0 8.53 7.99 38.84 6.76 153.21 7.20 1.03 31 E12a_E13a KnownJunction 0 4.62 3.84 25.18 7.75 140.07 10.16 1.61 32 ER13a ExonRegion 0 5.62 6.76 27.36 8.27 153.76 9.78 2.04 33 E13a_E15a KnownJunction 0 6.84 1.58 29.21 11.05 165.50 6.22 2.62 34 E14_Aa NovelBoundary 0 158.40 123.87 149.91 128.71 71.88 105.59 93.74 35 ER14a ExonRegion 0 4.03 0.96 2.22 0.94 102.18 0.49 0.00 36 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER15a ExonRegion 0 6.23 2.77 31.61 3.41 127.20 5.42 3.22 38 E15a_E16a KnownJunction 0 5.49 7.59 27.59 2.76 128.04 6.59 4.60 39 ER16a ExonRegion 0 7.01 7.79 28.69 3.82 171.65 3.37 3.76 40 E16a_E17a KnownJunction 0 4.34 8.33 37.95 5.01 220.11 3.00 5.55 41 ER17a ExonRegion 0 6.78 11.79 36.24 6.84 207.46 6.05 4.76 42 E17a_E20a KnownJunction 0 12.00 12.51 38.07 7.48 195.28 4.23 2.57 43 ER18a ExonRegion 0 0.00 0.00 0.79 0.00 0.87 0.00 0.00 44 E18a_E20a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E18b_E20a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER18b ExonRegion 0 0.00 0.00 0.68 0.00 0.00 0.00 0.00 47 ER19a ExonRegion 0 0.02 0.00 0.35 0.00 1.05 0.00 0.00 48 E19a_E20a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER20a ExonRegion 0 8.90 11.21 34.91 4.90 178.34 8.23 3.30 50 E20a_E21a KnownJunction 0 9.90 5.52 37.15 2.65 117.55 4.64 1.23 51 ER21a ExonRegion 0 9.02 7.17 26.10 1.82 131.64 3.94 1.81 52 E21a_E22a KnownJunction 0 1.90 5.75 17.76 1.68 117.62 0.00 1.82 53 ER22a ExonRegion 0 4.46 4.83 26.51 3.20 119.57 2.15 1.24 54 E22a_E23a KnownJunction 0 5.14 3.81 18.88 2.74 132.37 3.97 1.43 55 ER23a ExonRegion 0 5.39 5.30 22.92 4.61 142.65 4.14 2.45 56 E23a_E24a KnownJunction 0 5.21 10.04 21.51 6.94 133.66 4.45 4.30 57 ER24a ExonRegion 0 6.32 9.36 28.09 3.95 140.26 6.85 2.84 58 E24a_E25a KnownJunction 0 6.41 7.38 24.60 1.63 144.36 6.99 1.99 59 ER25a ExonRegion 0 3.26 5.24 21.58 4.26 109.07 5.02 2.00 60 ER25b ExonRegion 0 0.00 0.00 0.41 0.00 0.81 0.00 0.00