Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AMPH	Gene	0	21.88	0.17	1.28	0.17	28.23	5.34	0.04
2	353242	Transcript	0	3.92	0.00	0.44	0.00	7.47	1.64	0.04
3	356264	Transcript	0	12.38	0.00	1.27	0.00	20.01	0.90	0.00
4	325590	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER1a	ExonRegion	0	6.28	0.00	0.37	0.00	8.44	0.00	0.00
6	E1a_E2a	KnownJunction	0	3.89	0.00	0.00	0.00	1.06	0.00	0.00
7	ER2a	ExonRegion	0	4.16	0.00	0.00	0.66	4.75	1.12	0.00
8	E2a_E3a	KnownJunction	0	11.77	0.00	0.00	1.68	8.88	1.05	0.00
9	ER3a	ExonRegion	0	15.27	0.00	0.63	0.75	15.17	4.08	0.00
10	E3a_E4a	KnownJunction	0	14.52	0.00	1.95	0.00	23.42	9.30	0.00
11	ER4a	ExonRegion	0	15.56	0.00	1.25	0.00	25.09	6.23	0.00
12	E4a_E5a	KnownJunction	0	10.31	0.00	0.00	1.33	23.70	8.01	0.00
13	ER5a	ExonRegion	0	16.10	0.00	1.15	0.00	24.78	7.45	0.00
14	E5a_E6a	KnownJunction	0	25.80	0.00	3.22	0.00	27.43	6.51	0.00
15	ER6a	ExonRegion	0	28.38	0.00	1.90	0.00	27.56	8.65	0.42
16	E6a_E7a	KnownJunction	0	30.29	0.00	0.89	0.00	41.63	8.90	0.57
17	ER7a	ExonRegion	0	36.48	0.00	2.28	0.00	64.52	6.49	0.07
18	E7a_E8a	KnownJunction	0	52.81	0.00	3.20	0.00	72.32	7.99	0.00
19	ER8a	ExonRegion	0	59.99	0.00	3.07	0.00	48.39	13.66	0.00
20	E8a_E9a	KnownJunction	0	53.17	0.00	3.81	0.00	31.54	8.66	0.00
21	ER9a	ExonRegion	0	49.72	0.00	1.30	0.00	37.03	6.54	0.00
22	E9a_E10a	KnownJunction	0	39.19	0.00	2.36	0.00	67.11	8.68	0.00
23	ER10a	ExonRegion	0	31.99	0.00	1.79	0.00	40.57	4.34	0.00
24	E10a_E11a	KnownJunction	0	20.46	0.00	1.21	0.00	22.94	2.47	0.00
25	ER11a	ExonRegion	0	22.41	0.00	1.72	0.00	30.36	8.35	0.00
26	E11a_E12a	KnownJunction	0	22.40	0.00	0.89	0.00	34.23	4.77	0.00
27	ER12a	ExonRegion	0	20.64	0.00	0.69	0.00	22.95	6.38	0.00
28	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E13a_E15a	KnownJunction	0	5.42	0.00	0.70	0.00	13.76	1.47	0.00
30	E13a_E16b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER13a	ExonRegion	0	15.34	0.00	0.62	0.00	24.77	4.55	0.00
32	E14a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	E15a_E17a	KnownJunction	0	14.30	0.00	1.75	0.00	23.79	0.00	0.00
35	ER15a	ExonRegion	0	17.42	0.00	1.35	0.00	22.47	1.23	0.00
36	ER16a	ExonRegion	0	5.78	0.00	0.52	0.00	10.15	2.23	0.21
37	E16_Da	NovelBoundary	0	12.03	0.00	0.00	0.00	14.06	3.91	0.00
38	E16a_E17a	KnownJunction	0	4.36	0.00	0.00	0.00	1.89	0.00	0.00
39	ER16b	ExonRegion	0	5.95	0.00	0.00	0.00	5.70	0.00	0.00
40	I16	Intron	0	5.81	0.19	0.24	0.00	12.61	0.46	0.00
41	I16_AR1	ActiveIntronRegion	0	5.81	0.27	0.27	0.00	17.31	0.40	0.00
42	ER17a	ExonRegion	0	26.13	0.00	1.91	0.00	27.63	1.30	0.00
43	E17a_E18a	KnownJunction	0	17.37	0.00	0.83	0.00	22.78	1.63	0.00
44	ER18a	ExonRegion	0	18.75	0.02	1.56	0.00	21.85	4.13	0.00
45	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	E18a_E20a	KnownJunction	0	13.80	0.00	1.67	0.00	27.23	5.95	0.00
47	ER19a	ExonRegion	0	0.27	0.72	0.00	0.00	0.01	0.20	0.00
48	E19a_E20a	KnownJunction	0	1.03	0.00	0.00	0.00	0.00	1.39	0.00
49	ER20a	ExonRegion	0	18.24	1.06	1.18	0.45	28.12	6.94	0.00
50	E20a_E21a	KnownJunction	0	13.95	1.63	0.72	0.00	23.12	11.31	0.00
51	ER21a	ExonRegion	0	16.89	0.62	1.64	0.35	23.87	8.70	0.00
52	E21a_E22a	KnownJunction	0	26.97	1.26	1.38	0.00	20.33	6.57	0.00
53	ER22a	ExonRegion	0	31.83	0.87	1.69	0.00	29.06	3.71	0.00
54	E22a_E23a	KnownJunction	0	16.17	1.18	0.83	0.00	33.01	2.63	0.00
55	ER23a	ExonRegion	0	29.81	0.06	1.59	0.31	40.35	6.16	0.00
56	IG49_SR4	SilentIntergenicRegion	0	0.22	0.00	0.00	0.00	11.61	0.56	0.00
57	IG49_AR4	ActiveIntergenicRegion	0	0.17	0.00	0.00	0.00	10.60	0.00	0.00