Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC005682.6	Gene	0	5.86	8.34	13.32	20.46	4.93	24.70	4.81
2	407222	Transcript	0	1.83	2.77	4.32	7.08	1.55	8.14	1.63
3	IG18	Intergenic	0	2.84	1.62	25.07	18.22	18.34	10.62	8.30
4	IG18_AR3	ActiveIntergenicRegion	0	22.13	7.37	198.08	117.51	175.78	65.05	49.97
5	IG18_SR2	SilentIntergenicRegion	0	1.03	0.88	9.22	6.70	1.44	4.05	5.60
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E1_Da	NovelBoundary	0	0.90	7.64	1.78	6.91	0.00	13.80	1.61
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	0.00	0.02	0.00	0.00	0.00	0.02	0.00
10	E2_Da	NovelBoundary	1	0.83	0.00	2.53	8.78	0.00	4.85	0.00
11	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	I2	Intron	0	1.42	2.64	2.00	9.59	0.09	13.07	1.52
13	I2_SR1	SilentIntronRegion	0	1.42	2.64	2.00	9.61	0.09	13.09	1.52
14	E3_Aa	NovelBoundary	1	2.79	1.52	4.71	12.68	0.00	13.53	3.17
15	ER3a	ExonRegion	1	1.09	1.15	2.16	9.51	0.00	7.60	1.29
16	E3_Da	NovelBoundary	1	4.57	6.52	13.77	12.71	2.10	42.99	3.83
17	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	I3	Intron	0	2.74	3.56	5.22	8.46	0.34	14.73	1.82
19	I3_SR1	SilentIntronRegion	0	2.74	3.57	5.23	8.48	0.34	14.76	1.82
20	E4_Aa	NovelBoundary	0	3.55	4.97	6.45	13.92	0.00	20.53	3.15
21	ER4a	ExonRegion	0	0.41	3.83	2.53	8.57	0.00	6.52	2.14
22	E4_Da	NovelBoundary	1	2.94	0.00	2.37	21.00	0.00	16.59	4.74
23	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	I4	Intron	0	2.05	4.16	4.08	17.06	0.52	15.16	3.98
25	I4_SR1	SilentIntronRegion	0	2.06	4.18	4.10	17.14	0.52	15.23	4.00
26	E5_Aa	NovelBoundary	0	0.62	6.46	3.35	10.08	0.00	10.88	4.74
27	ER5a	ExonRegion	0	0.00	1.06	1.74	2.14	0.00	3.20	0.56
28	E5_Da	NovelBoundary	0	2.70	9.25	4.87	6.64	1.18	17.69	5.09
29	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	I5	Intron	0	1.09	1.51	3.92	7.96	0.32	7.92	2.77
31	I5_SR1	SilentIntronRegion	0	1.09	1.51	3.92	7.97	0.32	7.93	2.78
32	E6_Aa	NovelBoundary	0	2.39	16.95	12.09	24.76	0.97	32.96	6.74
33	ER6a	ExonRegion	0	4.30	9.37	13.25	33.44	3.46	36.56	2.95
34	E6_Da	NovelBoundary	0	5.02	12.06	18.84	43.83	1.18	41.33	6.00
35	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	I6	Intron	0	4.31	3.81	9.47	13.23	2.78	16.38	3.17
37	I6_SR1	SilentIntronRegion	1	4.94	2.37	7.54	15.89	2.13	17.53	2.03
38	I6_AR1	ActiveIntronRegion	1	1.28	0.54	1.51	7.90	0.00	7.90	2.70
39	I6_AR3	ActiveIntronRegion	0	4.71	3.73	13.16	12.73	3.75	18.60	4.07
40	I6_SR2	SilentIntronRegion	0	3.99	4.50	7.89	13.18	2.42	15.04	3.01
41	E7_Aa	NovelBoundary	0	11.07	27.24	34.35	39.55	13.65	70.70	12.35
42	ER7a	ExonRegion	0	16.86	23.46	35.43	42.16	16.19	60.22	12.73
43	E7_Da	NovelBoundary	0	17.52	48.52	29.20	60.20	4.15	137.48	10.03
44	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	I7	Intron	0	8.25	12.21	20.07	30.18	5.83	41.99	8.77
46	I7_SR1	SilentIntronRegion	0	8.27	12.23	20.10	30.23	5.84	42.06	8.78
47	E8_Aa	NovelBoundary	0	16.91	21.94	27.45	34.76	2.88	34.14	8.03
48	ER8a	ExonRegion	0	1.87	6.24	5.53	9.09	4.35	11.61	2.42
49	E8_Da	NovelBoundary	0	10.21	8.54	20.92	26.14	1.98	21.25	6.59
50	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	I8	Intron	0	4.36	6.33	10.38	16.99	1.89	17.63	5.84
52	I8_SR1	SilentIntronRegion	1	3.04	6.51	8.49	19.34	1.83	8.80	4.06
53	I8_AR1	ActiveIntronRegion	0	5.67	5.43	12.65	19.81	1.33	23.02	8.02
54	I8_SR2	SilentIntronRegion	0	4.14	6.54	9.98	16.10	2.04	17.03	5.44
55	E9_Aa	NovelBoundary	0	11.45	10.75	26.21	20.54	2.95	52.53	10.42
56	ER9a	ExonRegion	0	7.27	3.60	15.24	19.32	2.40	20.41	5.50
57	E9_Da	NovelBoundary	0	10.23	14.71	22.88	42.53	6.78	31.09	6.69
58	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	E10_Aa	NovelBoundary	0	13.34	8.80	19.80	33.11	2.12	42.61	10.92
60	ER10a	ExonRegion	0	2.91	3.81	6.14	10.27	3.07	8.52	3.40
61	IG17	Intergenic	0	17.68	15.57	28.07	55.08	24.18	31.74	17.03
62	IG17_SR5	SilentIntergenicRegion	0	5.60	6.01	12.07	17.17	4.91	17.57	8.11
63	IG17_AR4	ActiveIntergenicRegion	0	32.79	23.09	34.83	94.40	44.59	51.94	25.12
64	IG17_SR4	SilentIntergenicRegion	0	19.64	20.44	28.05	60.76	26.29	37.21	15.82
65	IG17_AR3	ActiveIntergenicRegion	0	36.15	24.33	60.99	114.03	44.73	57.85	29.11
66	IG17_SR3	SilentIntergenicRegion	0	30.11	27.45	44.98	96.88	37.95	44.72	27.34
67	IG17_AR2	ActiveIntergenicRegion	0	24.70	26.75	45.00	95.95	32.60	51.58	27.73
68	IG17_SR2	SilentIntergenicRegion	0	9.92	5.70	17.15	17.55	29.75	12.49	9.22
69	IG17_SR1	SilentIntergenicRegion	0	2.57	1.49	7.68	4.16	3.20	5.09	10.74