Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC093620.6	Gene	0	27.88	33.23	44.65	30.61	3.80	18.54	79.31
2	399434	Transcript	0	2.06	0.66	1.62	0.24	2.13	0.30	1.24
3	399537	Transcript	0	9.81	9.60	14.49	12.51	0.92	7.52	31.17
4	288841	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	399544	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	327499	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	328270	Transcript	0	35.94	27.27	80.55	34.94	2.06	22.31	151.27
8	ER1a	ExonRegion	0	1.80	0.00	1.11	0.00	0.22	0.00	0.77
9	E1a_E4a	KnownJunction	0	0.68	0.00	0.00	0.00	1.13	0.00	1.71
10	I1_AR2	ActiveIntronRegion	0	17.92	0.00	13.23	1.03	0.00	2.42	4.51
11	I1_SR3	SilentIntronRegion	0	12.28	0.00	8.89	2.03	0.67	2.37	4.51
12	ER2a	ExonRegion	0	0.00	1.06	0.00	1.05	0.00	0.00	0.59
13	E2a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.51
15	ER3b	ExonRegion	0	0.42	0.20	0.26	1.57	0.18	0.02	1.16
16	E3a_E4a	KnownJunction	0	0.80	1.31	0.00	0.00	1.18	0.00	2.25
17	ER4a	ExonRegion	0	27.27	39.19	42.36	27.11	3.43	19.25	65.77
18	E4a_E5a	KnownJunction	0	27.92	40.33	45.55	22.40	2.74	19.27	107.23
19	ER5a	ExonRegion	0	38.17	41.94	51.23	28.17	4.74	21.89	76.15
20	E5_Da	KnownBoundary	0	0.82	1.23	1.25	0.00	0.00	0.00	0.83
21	E5a_E6a	KnownJunction	0	42.81	54.36	34.19	26.36	3.34	16.00	66.66
22	ER5b	ExonRegion	0	3.69	1.97	3.75	0.73	5.04	0.90	1.25
23	ER6a	ExonRegion	0	14.07	26.73	16.81	19.00	1.66	10.74	34.72
24	E6a_E7a	KnownJunction	0	32.95	58.09	54.97	33.92	4.22	25.83	109.49
25	E6a_E7b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER7a	ExonRegion	0	34.25	57.79	56.42	34.20	7.29	22.77	108.99
27	ER7b	ExonRegion	0	27.33	49.90	57.54	39.60	8.74	18.70	110.70
28	E7a_E8a	KnownJunction	0	40.22	55.77	91.34	55.16	9.57	23.10	132.19
29	ER8a	ExonRegion	0	31.44	46.93	59.68	48.84	6.55	19.19	103.26
30	E8a_E9a	KnownJunction	0	23.60	41.54	72.25	51.83	7.26	22.35	117.40
31	ER9a	ExonRegion	0	29.14	38.34	56.73	50.37	6.88	17.81	93.95
32	E9a_E10a	KnownJunction	0	27.77	64.92	84.31	67.43	6.09	24.04	125.73
33	ER10a	ExonRegion	0	22.80	63.94	41.76	45.36	5.19	25.71	94.87
34	E10a_E11a	KnownJunction	0	27.10	59.16	43.93	28.80	5.81	27.26	115.35
35	ER11a	ExonRegion	1	13.50	31.37	13.91	24.14	2.04	14.49	57.63
36	E11_Ab	KnownBoundary	0	26.45	42.01	32.68	30.86	3.07	14.87	61.61
37	ER11b	ExonRegion	0	21.97	31.95	38.72	27.13	1.90	20.58	53.24
38	E11a_E12a	KnownJunction	0	19.31	22.36	36.16	32.32	0.90	23.69	45.79
39	ER12a	ExonRegion	0	36.39	48.22	54.47	39.07	5.47	21.71	81.09
40	E12_Da	NovelBoundary	0	25.85	33.84	49.07	30.34	4.15	21.79	52.87
41	E12a_E32b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	E12b_E13a	KnownJunction	0	39.52	53.49	75.59	65.80	7.88	43.42	83.67
43	ER12b	ExonRegion	0	36.99	49.81	64.45	52.19	6.13	37.31	77.67
44	ER13a	ExonRegion	0	35.84	62.03	71.55	48.79	8.06	35.59	105.65
45	E13a_E14a	KnownJunction	0	57.48	67.68	131.24	66.45	7.03	40.15	144.49
46	ER14a	ExonRegion	0	40.76	67.17	77.98	51.13	4.51	34.25	108.82
47	E14a_E15a	KnownJunction	0	55.38	50.07	73.06	40.01	3.25	26.37	51.81
48	E14a_E16a	KnownJunction	1	10.73	18.68	5.98	31.56	2.12	9.78	44.14
49	ER15a	ExonRegion	0	46.93	49.44	66.35	44.38	7.64	17.51	79.55
50	E15a_E16a	KnownJunction	0	52.07	51.96	72.08	54.45	9.91	18.36	88.44
51	ER16a	ExonRegion	0	67.65	84.33	105.15	86.43	12.79	34.01	161.84
52	E16a_E17a	KnownJunction	1	55.71	67.57	89.18	79.59	7.19	20.58	162.12
53	ER17a	ExonRegion	0	97.47	79.31	144.80	75.04	15.69	33.20	185.02
54	E17a_E18a	KnownJunction	0	109.34	74.85	158.03	67.73	6.78	30.36	185.20
55	ER18a	ExonRegion	0	65.33	58.61	102.29	53.55	9.13	31.04	118.47
56	E18_Da	NovelBoundary	0	66.84	54.91	62.19	30.53	26.72	16.03	42.76
57	E18a_E19a	KnownJunction	0	13.00	30.37	36.29	22.16	3.46	17.18	52.93
58	I18_AR1	ActiveIntronRegion	0	61.49	24.24	31.14	20.57	11.25	11.35	20.88
59	ER19a	ExonRegion	0	15.05	29.16	25.43	15.91	0.79	11.03	45.20
60	E19_Ab	KnownBoundary	0	23.08	23.01	33.76	15.47	0.00	7.85	71.00
61	ER19b	ExonRegion	0	22.69	28.09	39.43	24.13	1.75	15.44	82.84
62	E19a_E20a	KnownJunction	0	27.47	34.36	47.09	16.72	4.22	20.02	92.61
63	ER20a	ExonRegion	0	13.69	17.48	26.40	14.54	0.73	14.00	58.33
64	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	E20a_E22a	KnownJunction	1	8.98	11.53	34.39	15.90	1.11	20.21	72.06
66	E21_Aa	NovelBoundary	1	272.78	191.20	227.88	173.36	105.31	157.58	108.85
67	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	E21_Da	NovelBoundary	0	10612.16	7005.02	7744.20	6011.54	5131.47	5792.96	6299.40
69	E21a_E29c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
70	ER22a	ExonRegion	0	21.73	20.44	46.48	17.38	2.10	16.24	93.92
71	E22_Da	KnownBoundary	0	28.61	30.84	48.87	19.07	0.92	19.91	107.77
72	E22a_E29d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	ER22b	ExonRegion	0	25.99	28.75	52.24	23.62	2.07	23.31	112.38
74	E22b_E23a	KnownJunction	0	23.32	33.52	60.64	28.09	1.11	26.37	110.35
75	ER23a	ExonRegion	1	20.89	31.40	53.86	36.36	3.21	17.55	133.69
76	E23a_E24a	KnownJunction	0	25.87	42.22	51.20	27.23	2.26	21.95	107.89
77	ER24a	ExonRegion	0	37.71	45.59	73.43	48.22	4.37	23.81	178.06
78	E24a_E25a	KnownJunction	0	43.43	43.37	88.61	57.89	4.20	29.21	191.02
79	ER25a	ExonRegion	0	42.10	57.61	91.51	65.42	3.09	27.71	199.48
80	E25a_E26a	KnownJunction	0	46.70	65.02	88.88	76.72	0.00	26.05	211.33
81	ER26a	ExonRegion	0	51.02	65.39	94.13	73.70	3.05	31.79	222.78
82	E26a_E27a	KnownJunction	0	52.24	65.10	107.10	74.28	6.64	28.38	219.17
83	ER27a	ExonRegion	0	47.54	66.92	107.09	73.49	4.13	33.78	214.48
84	E27a_E28a	KnownJunction	0	48.55	49.73	109.34	55.62	5.46	37.55	181.05
85	ER28a	ExonRegion	0	40.34	42.17	82.00	42.23	3.33	34.83	163.96
86	E28a_E29a	KnownJunction	0	35.77	26.11	81.18	34.22	2.33	23.05	152.50
87	E28b_E29b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.72
88	ER28b	ExonRegion	0	0.96	0.00	2.71	1.25	0.40	0.00	1.35
89	E29_Ab	NovelBoundary	1	10.15	0.00	32.32	0.00	0.00	0.00	0.00
90	ER29a	ExonRegion	0	36.12	28.43	79.93	35.66	1.78	21.58	150.03
91	ER29b	ExonRegion	0	23.95	26.89	38.95	29.27	1.59	16.50	72.67
92	E29_Da	KnownBoundary	1	19.71	17.13	31.86	25.98	3.37	6.43	55.19
93	E29_Ac	KnownBoundary	0	28.12	27.77	42.55	38.04	1.11	19.27	98.93
94	ER29c	ExonRegion	0	24.39	25.27	35.92	32.50	2.48	17.37	69.89
95	ER29d	ExonRegion	0	15.55	17.52	20.62	23.42	0.60	16.06	37.53
96	E29_Ad	KnownBoundary	1	0.00	378.10	1.08	791.76	0.00	651.66	0.64
97	ER29e	ExonRegion	0	13.50	19.14	22.30	20.49	1.25	12.21	53.29
98	E29c_E30a	KnownJunction	0	34.82	28.37	64.09	30.69	2.95	23.10	117.93
99	ER29f	ExonRegion	0	31.12	37.05	57.92	33.67	4.05	22.07	110.30
100	ER30a	ExonRegion	0	44.12	36.10	62.92	46.17	3.94	23.56	130.93
101	E30a_E31a	KnownJunction	0	55.09	34.36	83.39	41.23	4.59	45.69	160.23
102	ER31a	ExonRegion	0	55.90	31.89	60.14	37.96	3.37	33.84	115.04
103	E31a_E32a	KnownJunction	0	75.27	43.19	89.81	43.16	4.17	16.94	166.26
104	ER32a	ExonRegion	0	82.63	51.90	115.14	59.50	3.79	40.79	239.86
105	E32_Da	KnownBoundary	0	97.52	44.48	127.61	53.42	1.18	31.25	227.91
106	ER32b	ExonRegion	0	51.17	41.36	81.73	45.73	3.26	39.28	160.90
107	E32_Ab	KnownBoundary	0	40.69	39.30	92.57	43.02	3.18	37.22	153.05
108	ER32c	ExonRegion	0	17.61	17.39	34.53	19.38	1.57	21.95	59.12
109	ER32d	ExonRegion	0	1.08	0.00	4.06	0.50	0.00	1.23	2.97